Pre-mRNA-splicing factor ATP-dependent RNA helicase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HA2_C | PF21010 | 261 - 315 | 5.2e-07 | Helicase associated domain (HA2), ratchet-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 483 |
| AarI | CACCTGC | 1 cut(s) | 751 |
| Acc36I | ACCTGC | 2 cut(s) | 360, 751 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 494 |
| AccI | GTMKAC | 1 cut(s) | 1223 |
| AccII | CGCG | 1 cut(s) | 901 |
| AciI | CCGC | 2 cut(s) | 145, 776 |
| AclWI | GGATC | 4 cut(s) | 544, 557, 939, 1183 |
| AcsI | RAATTY | 1 cut(s) | 976 |
| AcuI | CTGAAG | 2 cut(s) | 339, 768 |
| AfaI | GTAC | 3 cut(s) | 342, 657, 797 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 254, 494, 1236, 1237, 1262 |
| AgeI | ACCGGT | 2 cut(s) | 842, 1136 |
| AgsI | TTSAA | 6 cut(s) | 109, 173, 230, 296, 368, 789 |
| AjnI | CCWGG | 3 cut(s) | 401, 457, 552 |
| AleI | CACNNNNGTG | 1 cut(s) | 991 |
| AluBI | AGCT | 8 cut(s) | 43, 116, 325, 377, 809, 1054, 1063, 1087 |
| AluI | AGCT | 8 cut(s) | 43, 116, 325, 377, 809, 1054, 1063, 1087 |
| Alw21I | GWGCWC | 2 cut(s) | 1089, 1255 |
| AlwI | GGATC | 4 cut(s) | 544, 557, 939, 1183 |
| Ama87I | CYCGRG | 2 cut(s) | 44, 1235 |
| AoxI | GGCC | 3 cut(s) | 399, 438, 579 |
| ApeKI | GCWGC | 3 cut(s) | 8, 1060, 1162 |
| ApoI | RAATTY | 1 cut(s) | 976 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 614, 646 |
| AsiGI | ACCGGT | 2 cut(s) | 842, 1136 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 410 |
| AspLEI | GCGC | 1 cut(s) | 901 |
| AspS9I | GGNCC | 3 cut(s) | 399, 438, 580 |
| AsuHPI | GGTGA | 5 cut(s) | 268, 826, 860, 1081, 1197 |
| AvaI | CYCGRG | 2 cut(s) | 44, 1235 |
| BamHI | GGATCC | 1 cut(s) | 549 |
| BanII | GRGCYC | 2 cut(s) | 387, 1089 |
| BauI | CACGAG | 1 cut(s) | 768 |
| BbsI | GAAGAC | 1 cut(s) | 850 |
| Bbv12I | GWGCWC | 2 cut(s) | 1089, 1255 |
| BbvCI | CCTCAGC | 1 cut(s) | 810 |
| BbvI | GCAGC | 2 cut(s) | 1072, 1174 |
| BccI | CCATC | 1 cut(s) | 1235 |
| BciT130I | CCWGG | 3 cut(s) | 403, 459, 554 |
| BclI | TGATCA | 1 cut(s) | 79 |
| BfaI | CTAG | 2 cut(s) | 360, 1100 |
| BfmI | CTRYAG | 1 cut(s) | 1116 |
| BfuAI | ACCTGC | 2 cut(s) | 360, 751 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 361, 425 |
| BisI | GCNGC | 3 cut(s) | 9, 1061, 1163 |
| BlpI | GCTNAGC | 1 cut(s) | 805 |
| BlsI | GCNGC | 3 cut(s) | 10, 1062, 1164 |
| Bme1390I | CCNGG | 3 cut(s) | 403, 459, 554 |
| BmeT110I | CYCGRG | 2 cut(s) | 44, 1235 |
| BmgT120I | GGNCC | 3 cut(s) | 399, 438, 580 |
| BmiI | GGNNCC | 5 cut(s) | 400, 439, 551, 582, 1113 |
| BmrFI | CCNGG | 3 cut(s) | 403, 459, 554 |
| BmrI | ACTGGG | 2 cut(s) | 261, 504 |
| BmsI | GCATC | 2 cut(s) | 706, 877 |
| BmuI | ACTGGG | 2 cut(s) | 261, 504 |
| BpiI | GAAGAC | 1 cut(s) | 850 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1076, 1108 |
| Bpu10I | CCTNAGC | 1 cut(s) | 810 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 805 |
| BpuEI | CTTGAG | 2 cut(s) | 378, 1076 |
| BsaBI | GATNNNNATC | 1 cut(s) | 59 |
| BsaJI | CCNNGG | 2 cut(s) | 457, 458 |
| BsaWI | WCCGGW | 3 cut(s) | 68, 842, 1136 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1237, 1267 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 254, 494, 1236, 1237, 1262 |
| Bse118I | RCCGGY | 2 cut(s) | 842, 1136 |
| Bse1I | ACTGG | 2 cut(s) | 256, 499 |
| Bse3DI | GCAATG | 3 cut(s) | 759, 936, 941 |
| Bse8I | GATNNNNATC | 1 cut(s) | 59 |
| BseBI | CCWGG | 3 cut(s) | 403, 459, 554 |
| BseDI | CCNNGG | 2 cut(s) | 457, 458 |
| BseGI | GGATG | 4 cut(s) | 153, 211, 1226, 1246 |
| BseJI | GATNNNNATC | 1 cut(s) | 59 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 254, 494, 1236, 1237, 1262 |
| BseMI | GCAATG | 3 cut(s) | 759, 936, 941 |
| BseMII | CTCAG | 2 cut(s) | 801, 819 |
| BseNI | ACTGG | 2 cut(s) | 256, 499 |
| BseRI | GAGGAG | 1 cut(s) | 1042 |
| BseXI | GCAGC | 2 cut(s) | 1072, 1174 |
| BsgI | GTGCAG | 1 cut(s) | 207 |
| Bsh1236I | CGCG | 1 cut(s) | 901 |
| BshFI | GGCC | 3 cut(s) | 401, 440, 581 |
| BshTI | ACCGGT | 2 cut(s) | 842, 1136 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1089, 1255 |
| BsiHKCI | CYCGRG | 2 cut(s) | 44, 1235 |
| BsiSI | CCGG | 3 cut(s) | 69, 843, 1137 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 254, 494, 1236, 1237, 1262 |
| BsnI | GGCC | 3 cut(s) | 401, 440, 581 |
| BsoBI | CYCGRG | 2 cut(s) | 44, 1235 |
| Bsp1286I | GDGCHC | 3 cut(s) | 387, 1089, 1255 |
| Bsp143I | GATC | 6 cut(s) | 79, 280, 549, 610, 931, 1175 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 805 |
| BspACI | CCGC | 2 cut(s) | 145, 776 |
| BspANI | GGCC | 3 cut(s) | 401, 440, 581 |
| BspCNI | CTCAG | 2 cut(s) | 802, 818 |
| BspFNI | CGCG | 1 cut(s) | 901 |
| BspHI | TCATGA | 2 cut(s) | 283, 1274 |
| BspLI | GGNNCC | 5 cut(s) | 400, 439, 551, 582, 1113 |
| BspMI | ACCTGC | 2 cut(s) | 360, 751 |
| BspPI | GGATC | 4 cut(s) | 544, 557, 939, 1183 |
| BspQI | GCTCTTC | 1 cut(s) | 315 |
| BsrDI | GCAATG | 3 cut(s) | 759, 936, 941 |
| BsrFI | RCCGGY | 2 cut(s) | 842, 1136 |
| BsrI | ACTGG | 2 cut(s) | 256, 499 |
| BssAI | RCCGGY | 2 cut(s) | 842, 1136 |
| BssECI | CCNNGG | 2 cut(s) | 457, 458 |
| BssMI | GATC | 6 cut(s) | 79, 280, 549, 610, 931, 1175 |
| BssNAI | GTATAC | 1 cut(s) | 1224 |
| BssSI | CACGAG | 1 cut(s) | 768 |
| Bst1107I | GTATAC | 1 cut(s) | 1224 |
| Bst2BI | CACGAG | 1 cut(s) | 768 |
| Bst2UI | CCWGG | 3 cut(s) | 403, 459, 554 |
| Bst4CI | ACNGT | 5 cut(s) | 424, 646, 720, 990, 1189 |
| Bst6I | CTCTTC | 2 cut(s) | 282, 315 |
| BstC8I | GCNNGC | 1 cut(s) | 357 |
| BstDEI | CTNAG | 4 cut(s) | 686, 805, 810, 947 |
| BstF5I | GGATG | 4 cut(s) | 153, 211, 1226, 1246 |
| BstFNI | CGCG | 1 cut(s) | 901 |
| BstHHI | GCGC | 1 cut(s) | 901 |
| BstKTI | GATC | 6 cut(s) | 82, 283, 552, 613, 934, 1178 |
| BstMBI | GATC | 6 cut(s) | 79, 280, 549, 610, 931, 1175 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 361, 425, 782, 896, 1060 |
| BstNI | CCWGG | 3 cut(s) | 403, 459, 554 |
| BstSCI | CCNGG | 3 cut(s) | 401, 457, 552 |
| BstSFI | CTRYAG | 1 cut(s) | 1116 |
| BstUI | CGCG | 1 cut(s) | 901 |
| BstV1I | GCAGC | 2 cut(s) | 1072, 1174 |
| BstV2I | GAAGAC | 1 cut(s) | 850 |
| BstX2I | RGATCY | 2 cut(s) | 549, 1175 |
| BstYI | RGATCY | 2 cut(s) | 549, 1175 |
| BstZ17I | GTATAC | 1 cut(s) | 1224 |
| BsuRI | GGCC | 3 cut(s) | 401, 440, 581 |
| BtsCI | GGATG | 4 cut(s) | 153, 211, 1226, 1246 |
| BtsI | GCAGTG | 1 cut(s) | 219 |
| BtsIMutI | CAGTG | 4 cut(s) | 219, 429, 651, 995 |
| BveI | ACCTGC | 2 cut(s) | 360, 751 |
| Cac8I | GCNNGC | 1 cut(s) | 357 |
| CciI | TCATGA | 2 cut(s) | 283, 1274 |
| CfoI | GCGC | 1 cut(s) | 901 |
| Cfr10I | RCCGGY | 2 cut(s) | 842, 1136 |
| Cfr13I | GGNCC | 3 cut(s) | 399, 438, 580 |
| Csp6I | GTAC | 3 cut(s) | 341, 656, 796 |
| CspAI | ACCGGT | 2 cut(s) | 842, 1136 |
| CviQI | GTAC | 3 cut(s) | 341, 656, 796 |
| DdeI | CTNAG | 4 cut(s) | 686, 805, 810, 947 |
| DpnI | GATC | 6 cut(s) | 81, 282, 551, 612, 933, 1177 |
| DpnII | GATC | 6 cut(s) | 79, 280, 549, 610, 931, 1175 |
| Eam1104I | CTCTTC | 2 cut(s) | 282, 315 |
| EarI | CTCTTC | 2 cut(s) | 282, 315 |
| EciI | GGCGGA | 1 cut(s) | 160 |
| Ecl136II | GAGCTC | 1 cut(s) | 1087 |
| Eco24I | GRGCYC | 2 cut(s) | 387, 1089 |
| Eco53kI | GAGCTC | 1 cut(s) | 1087 |
| Eco57I | CTGAAG | 2 cut(s) | 339, 768 |
| Eco88I | CYCGRG | 2 cut(s) | 44, 1235 |
| EcoICRI | GAGCTC | 1 cut(s) | 1087 |
| EcoO109I | RGGNCCY | 1 cut(s) | 580 |
| EcoRII | CCWGG | 3 cut(s) | 401, 457, 552 |
| EcoT22I | ATGCAT | 1 cut(s) | 964 |
| EcoT38I | GRGCYC | 2 cut(s) | 387, 1089 |
| FbaI | TGATCA | 1 cut(s) | 79 |
| FblI | GTMKAC | 1 cut(s) | 1223 |
| Fnu4HI | GCNGC | 3 cut(s) | 9, 1061, 1163 |
| FokI | GGATG | 4 cut(s) | 160, 218, 1213, 1253 |
| FriOI | GRGCYC | 2 cut(s) | 387, 1089 |
| Fsp4HI | GCNGC | 3 cut(s) | 9, 1061, 1163 |
| FspBI | CTAG | 2 cut(s) | 360, 1100 |
| GlaI | GCGC | 1 cut(s) | 900 |
| GluI | GCNGC | 3 cut(s) | 9, 1061, 1163 |
| HaeIII | GGCC | 3 cut(s) | 401, 440, 581 |
| HapII | CCGG | 3 cut(s) | 69, 843, 1137 |
| HhaI | GCGC | 1 cut(s) | 901 |
| Hin6I | GCGC | 1 cut(s) | 899 |
| HinP1I | GCGC | 1 cut(s) | 899 |
| HindIII | AAGCTT | 2 cut(s) | 375, 1052 |
| HinfI | GANTC | 2 cut(s) | 851, 1202 |
| HpaII | CCGG | 3 cut(s) | 69, 843, 1137 |
| HphI | GGTGA | 5 cut(s) | 268, 826, 860, 1081, 1197 |
| Hpy166II | GTNNAC | 2 cut(s) | 955, 1224 |
| Hpy188III | TCNNGA | 7 cut(s) | 15, 284, 768, 998, 1046, 1256, 1275 |
| Hpy8I | GTNNAC | 2 cut(s) | 955, 1224 |
| HpyAV | CCTTC | 3 cut(s) | 400, 1066, 1117 |
| HpyCH4III | ACNGT | 5 cut(s) | 424, 646, 720, 990, 1189 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 361, 425, 782, 896, 1060 |
| HpyF3I | CTNAG | 4 cut(s) | 686, 805, 810, 947 |
| HspAI | GCGC | 1 cut(s) | 899 |
| Ksp22I | TGATCA | 1 cut(s) | 79 |
| Kzo9I | GATC | 6 cut(s) | 79, 280, 549, 610, 931, 1175 |
| LguI | GCTCTTC | 1 cut(s) | 315 |
| LmnI | GCTCC | 3 cut(s) | 121, 1111, 1258 |
| Lsp1109I | GCAGC | 2 cut(s) | 1072, 1174 |
| LweI | GCATC | 2 cut(s) | 706, 877 |
| MaeI | CTAG | 2 cut(s) | 360, 1100 |
| MaeIII | GTNAC | 2 cut(s) | 158, 995 |
| MalI | GATC | 6 cut(s) | 81, 282, 551, 612, 933, 1177 |
| MboI | GATC | 6 cut(s) | 79, 280, 549, 610, 931, 1175 |
| MboII | GAAGA | 5 cut(s) | 299, 317, 320, 332, 850 |
| MfeI | CAATTG | 2 cut(s) | 168, 789 |
| MflI | RGATCY | 2 cut(s) | 549, 1175 |
| MhlI | GDGCHC | 3 cut(s) | 387, 1089, 1255 |
| MluCI | AATT | 6 cut(s) | 168, 311, 616, 709, 789, 976 |
| MnlI | CCTC | 9 cut(s) | 402, 465, 747, 775, 805, 964, 1020, 1102, 1158 |
| Mph1103I | ATGCAT | 1 cut(s) | 964 |
| MroXI | GAANNNNTTC | 1 cut(s) | 410 |
| MseI | TTAA | 3 cut(s) | 95, 506, 708 |
| MslI | CAYNNNNRTG | 2 cut(s) | 885, 991 |
| MspA1I | CMGCKG | 1 cut(s) | 809 |
| MspI | CCGG | 3 cut(s) | 69, 843, 1137 |
| MspR9I | CCNGG | 3 cut(s) | 403, 459, 554 |
| MunI | CAATTG | 2 cut(s) | 168, 789 |
| MvaI | CCWGG | 3 cut(s) | 403, 459, 554 |
| MvnI | CGCG | 1 cut(s) | 901 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 361, 425, 782, 896, 1060 |
| NdeII | GATC | 6 cut(s) | 79, 280, 549, 610, 931, 1175 |
| NlaIV | GGNNCC | 5 cut(s) | 400, 439, 551, 582, 1113 |
| NmuCI | GTSAC | 2 cut(s) | 158, 995 |
| NsiI | ATGCAT | 1 cut(s) | 964 |
| OliI | CACNNNNGTG | 1 cut(s) | 991 |
| PagI | TCATGA | 2 cut(s) | 283, 1274 |
| PaqCI | CACCTGC | 1 cut(s) | 751 |
| PasI | CCCWGGG | 1 cut(s) | 458 |
| PciSI | GCTCTTC | 1 cut(s) | 315 |
| PdmI | GAANNNNTTC | 1 cut(s) | 410 |
| PfeI | GAWTC | 2 cut(s) | 851, 1202 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 494 |
| PinAI | ACCGGT | 2 cut(s) | 842, 1136 |
| PkrI | GCNGC | 3 cut(s) | 10, 1062, 1164 |
| PsiI | TTATAA | 1 cut(s) | 483 |
| Psp124BI | GAGCTC | 1 cut(s) | 1089 |
| Psp6I | CCWGG | 3 cut(s) | 401, 457, 552 |
| PspGI | CCWGG | 3 cut(s) | 401, 457, 552 |
| PspN4I | GGNNCC | 5 cut(s) | 400, 439, 551, 582, 1113 |
| PspPI | GGNCC | 3 cut(s) | 399, 438, 580 |
| PsuI | RGATCY | 2 cut(s) | 549, 1175 |
| PvuII | CAGCTG | 1 cut(s) | 809 |
| RsaI | GTAC | 3 cut(s) | 342, 657, 797 |
| RsaNI | GTAC | 3 cut(s) | 341, 656, 796 |
| RseI | CAYNNNNRTG | 2 cut(s) | 885, 991 |
| SacI | GAGCTC | 1 cut(s) | 1089 |
| SapI | GCTCTTC | 1 cut(s) | 315 |
| SaqAI | TTAA | 3 cut(s) | 95, 506, 708 |
| SatI | GCNGC | 3 cut(s) | 9, 1061, 1163 |
| Sau3AI | GATC | 6 cut(s) | 79, 280, 549, 610, 931, 1175 |
| Sau96I | GGNCC | 3 cut(s) | 399, 438, 580 |
| ScrFI | CCNGG | 3 cut(s) | 403, 459, 554 |
| SduI | GDGCHC | 3 cut(s) | 387, 1089, 1255 |
| SfaNI | GCATC | 2 cut(s) | 706, 877 |
| SfcI | CTRYAG | 1 cut(s) | 1116 |
| SgrAI | CRCCGGYG | 1 cut(s) | 842 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 885, 991 |
| SmlI | CTYRAG | 2 cut(s) | 393, 1055 |
| SmoI | CTYRAG | 2 cut(s) | 393, 1055 |
| Sse9I | AATT | 6 cut(s) | 168, 311, 616, 709, 789, 976 |
| SsiI | CCGC | 2 cut(s) | 145, 776 |
| SspMI | CTAG | 2 cut(s) | 360, 1100 |
| SstI | GAGCTC | 1 cut(s) | 1089 |
| StyD4I | CCNGG | 3 cut(s) | 401, 457, 552 |
| TaaI | ACNGT | 5 cut(s) | 424, 646, 720, 990, 1189 |
| TaqI | TCGA | 2 cut(s) | 574, 865 |
| TasI | AATT | 6 cut(s) | 168, 311, 616, 709, 789, 976 |
| TatI | WGTACW | 2 cut(s) | 655, 795 |
| TfiI | GAWTC | 2 cut(s) | 851, 1202 |
| Tru1I | TTAA | 3 cut(s) | 95, 506, 708 |
| Tru9I | TTAA | 3 cut(s) | 95, 506, 708 |
| TscAI | CASTG | 4 cut(s) | 226, 429, 651, 995 |
| TseFI | GTSAC | 2 cut(s) | 158, 995 |
| TseI | GCWGC | 3 cut(s) | 8, 1060, 1162 |
| Tsp45I | GTSAC | 2 cut(s) | 158, 995 |
| TspDTI | ATGAA | 6 cut(s) | 194, 300, 360, 651, 902, 1184 |
| TspGWI | ACGGA | 3 cut(s) | 587, 676, 1209 |
| TspRI | CASTG | 4 cut(s) | 226, 429, 651, 995 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 494 |
| XapI | RAATTY | 1 cut(s) | 976 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1238 |
| XmiI | GTMKAC | 1 cut(s) | 1223 |
| XmnI | GAANNNNTTC | 1 cut(s) | 410 |
| XspI | CTAG | 2 cut(s) | 360, 1100 |
| Zsp2I | ATGCAT | 1 cut(s) | 964 |