Pre-mRNA-splicing factor ATP-dependent RNA helicase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1449 |
| AccB1I | GGYRCC | 1 cut(s) | 1485 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1771 |
| AccBSI | CCGCTC | 1 cut(s) | 1552 |
| AccI | GTMKAC | 1 cut(s) | 333 |
| AccII | CGCG | 1 cut(s) | 1744 |
| AccIII | TCCGGA | 1 cut(s) | 1360 |
| AciI | CCGC | 6 cut(s) | 1232, 1329, 1552, 1688, 1742, 1744 |
| AclWI | GGATC | 3 cut(s) | 905, 1124, 1137 |
| AcoI | YGGCCR | 3 cut(s) | 848, 1685, 1745 |
| AcsI | RAATTY | 3 cut(s) | 498, 633, 1816 |
| AcuI | CTGAAG | 3 cut(s) | 1065, 1164, 1260 |
| AcvI | CACGTG | 1 cut(s) | 538 |
| AdeI | CACNNNGTG | 1 cut(s) | 1184 |
| AfaI | GTAC | 2 cut(s) | 1050, 1286 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 972, 1748, 1771 |
| AflIII | ACRYGT | 2 cut(s) | 537, 1112 |
| AgsI | TTSAA | 6 cut(s) | 227, 385, 592, 632, 773, 954 |
| AhlI | ACTAGT | 1 cut(s) | 370 |
| AjnI | CCWGG | 2 cut(s) | 146, 525 |
| Alw21I | GWGCWC | 3 cut(s) | 125, 1295, 1581 |
| Alw26I | GTCTC | 2 cut(s) | 782, 1792 |
| Alw44I | GTGCAC | 1 cut(s) | 121 |
| AlwI | GGATC | 3 cut(s) | 905, 1124, 1137 |
| Ama87I | CYCGRG | 1 cut(s) | 883 |
| Aor13HI | TCCGGA | 1 cut(s) | 1360 |
| AoxI | GGCC | 4 cut(s) | 339, 848, 1685, 1745 |
| ApaLI | GTGCAC | 1 cut(s) | 121 |
| ApeKI | GCWGC | 4 cut(s) | 155, 158, 701, 1654 |
| ApoI | RAATTY | 3 cut(s) | 498, 633, 1816 |
| AspS9I | GGNCC | 5 cut(s) | 340, 928, 1512, 1540, 1774 |
| AsuC2I | CCSGG | 1 cut(s) | 1749 |
| AsuHPI | GGTGA | 3 cut(s) | 1214, 1232, 1346 |
| AsuII | TTCGAA | 1 cut(s) | 496 |
| AvaI | CYCGRG | 1 cut(s) | 883 |
| AvaII | GGWCC | 4 cut(s) | 928, 1512, 1540, 1774 |
| BaeGI | GKGCMC | 1 cut(s) | 125 |
| BamHI | GGATCC | 1 cut(s) | 1129 |
| BanI | GGYRCC | 1 cut(s) | 1485 |
| BanII | GRGCYC | 1 cut(s) | 1581 |
| BbrPI | CACGTG | 1 cut(s) | 538 |
| BbsI | GAAGAC | 1 cut(s) | 693 |
| Bbv12I | GWGCWC | 3 cut(s) | 125, 1295, 1581 |
| BbvI | GCAGC | 4 cut(s) | 142, 145, 713, 1641 |
| BccI | CCATC | 4 cut(s) | 263, 322, 406, 1222 |
| BceAI | ACGGC | 1 cut(s) | 1700 |
| BciT130I | CCWGG | 2 cut(s) | 148, 527 |
| BclI | TGATCA | 2 cut(s) | 1024, 1336 |
| BcnI | CCSGG | 1 cut(s) | 1749 |
| BcoDI | GTCTC | 2 cut(s) | 782, 1792 |
| BcuI | ACTAGT | 1 cut(s) | 370 |
| BfaI | CTAG | 6 cut(s) | 162, 191, 371, 402, 482, 1094 |
| BfmI | CTRYAG | 3 cut(s) | 316, 1655, 1714 |
| BisI | GCNGC | 7 cut(s) | 156, 159, 702, 1553, 1655, 1688, 1745 |
| BlsI | GCNGC | 7 cut(s) | 157, 160, 703, 1554, 1656, 1689, 1746 |
| Bme1390I | CCNGG | 3 cut(s) | 148, 527, 1749 |
| Bme18I | GGWCC | 4 cut(s) | 928, 1512, 1540, 1774 |
| BmeT110I | CYCGRG | 1 cut(s) | 883 |
| BmgT120I | GGNCC | 5 cut(s) | 340, 928, 1512, 1540, 1774 |
| BmiI | GGNNCC | 3 cut(s) | 1131, 1487, 1541 |
| BmrFI | CCNGG | 3 cut(s) | 148, 527, 1749 |
| BmrI | ACTGGG | 1 cut(s) | 1474 |
| BmsI | GCATC | 7 cut(s) | 292, 724, 968, 1099, 1237, 1369, 1742 |
| BmuI | ACTGGG | 1 cut(s) | 1474 |
| BpiI | GAAGAC | 1 cut(s) | 693 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1568, 1600 |
| Bpu10I | CCTNAGC | 1 cut(s) | 971 |
| Bpu14I | TTCGAA | 1 cut(s) | 496 |
| BpuEI | CTTGAG | 3 cut(s) | 156, 1424, 1568 |
| BpuMI | CCSGG | 1 cut(s) | 1749 |
| BsaAI | YACGTR | 1 cut(s) | 538 |
| BsaI | GGTCTC | 1 cut(s) | 782 |
| BsaJI | CCNNGG | 2 cut(s) | 525, 1742 |
| BsaWI | WCCGGW | 1 cut(s) | 1360 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 972, 1748, 1771 |
| Bse118I | RCCGGY | 1 cut(s) | 1331 |
| Bse1I | ACTGG | 3 cut(s) | 52, 1480, 1676 |
| Bse3DI | GCAATG | 3 cut(s) | 1027, 1257, 1428 |
| BseAI | TCCGGA | 1 cut(s) | 1360 |
| BseBI | CCWGG | 2 cut(s) | 148, 527 |
| BseDI | CCNNGG | 2 cut(s) | 525, 1742 |
| BseGI | GGATG | 4 cut(s) | 520, 1233, 1252, 1757 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 972, 1748, 1771 |
| BseMI | GCAATG | 3 cut(s) | 1027, 1257, 1428 |
| BseMII | CTCAG | 4 cut(s) | 494, 1203, 1359, 1488 |
| BseNI | ACTGG | 3 cut(s) | 52, 1480, 1676 |
| BseRI | GAGGAG | 2 cut(s) | 507, 1573 |
| BseSI | GKGCMC | 1 cut(s) | 125 |
| BseX3I | CGGCCG | 2 cut(s) | 1685, 1745 |
| BseXI | GCAGC | 4 cut(s) | 142, 145, 713, 1641 |
| BseYI | CCCAGC | 1 cut(s) | 860 |
| Bsh1236I | CGCG | 1 cut(s) | 1744 |
| Bsh1285I | CGRYCG | 3 cut(s) | 1269, 1688, 1748 |
| BshFI | GGCC | 4 cut(s) | 341, 850, 1687, 1747 |
| BshNI | GGYRCC | 1 cut(s) | 1485 |
| BsiEI | CGRYCG | 3 cut(s) | 1269, 1688, 1748 |
| BsiHKAI | GWGCWC | 3 cut(s) | 125, 1295, 1581 |
| BsiHKCI | CYCGRG | 1 cut(s) | 883 |
| BsiSI | CCGG | 3 cut(s) | 1332, 1361, 1748 |
| BslFI | GGGAC | 1 cut(s) | 1553 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 972, 1748, 1771 |
| BsmAI | GTCTC | 2 cut(s) | 782, 1792 |
| BsmFI | GGGAC | 1 cut(s) | 1553 |
| BsmI | GAATGC | 1 cut(s) | 1401 |
| BsnI | GGCC | 4 cut(s) | 341, 850, 1687, 1747 |
| Bso31I | GGTCTC | 1 cut(s) | 782 |
| BsoBI | CYCGRG | 1 cut(s) | 883 |
| Bsp119I | TTCGAA | 1 cut(s) | 496 |
| Bsp1286I | GDGCHC | 3 cut(s) | 125, 1295, 1581 |
| Bsp13I | TCCGGA | 1 cut(s) | 1360 |
| Bsp143I | GATC | 8 cut(s) | 679, 910, 1024, 1129, 1266, 1336, 1423, 1718 |
| BspACI | CCGC | 6 cut(s) | 1232, 1329, 1552, 1688, 1742, 1744 |
| BspANI | GGCC | 4 cut(s) | 341, 850, 1687, 1747 |
| BspCNI | CTCAG | 4 cut(s) | 495, 1204, 1358, 1487 |
| BspEI | TCCGGA | 1 cut(s) | 1360 |
| BspFNI | CGCG | 1 cut(s) | 1744 |
| BspHI | TCATGA | 2 cut(s) | 637, 1339 |
| BspLI | GGNNCC | 3 cut(s) | 1131, 1487, 1541 |
| BspMAI | CTGCAG | 1 cut(s) | 1659 |
| BspPI | GGATC | 3 cut(s) | 905, 1124, 1137 |
| BspT104I | TTCGAA | 1 cut(s) | 496 |
| BspT107I | GGYRCC | 1 cut(s) | 1485 |
| BspTNI | GGTCTC | 1 cut(s) | 782 |
| BsrBI | CCGCTC | 1 cut(s) | 1552 |
| BsrDI | GCAATG | 3 cut(s) | 1027, 1257, 1428 |
| BsrFI | RCCGGY | 1 cut(s) | 1331 |
| BsrI | ACTGG | 3 cut(s) | 52, 1480, 1676 |
| BssAI | RCCGGY | 1 cut(s) | 1331 |
| BssECI | CCNNGG | 2 cut(s) | 525, 1742 |
| BssMI | GATC | 8 cut(s) | 679, 910, 1024, 1129, 1266, 1336, 1423, 1718 |
| Bst2UI | CCWGG | 2 cut(s) | 148, 527 |
| Bst4CI | ACNGT | 2 cut(s) | 250, 1850 |
| Bst6I | CTCTTC | 1 cut(s) | 1089 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1184 |
| BstBAI | YACGTR | 1 cut(s) | 538 |
| BstBI | TTCGAA | 1 cut(s) | 496 |
| BstC8I | GCNNGC | 2 cut(s) | 762, 1728 |
| BstDEI | CTNAG | 6 cut(s) | 503, 971, 1212, 1260, 1345, 1474 |
| BstDSI | CCRYGG | 1 cut(s) | 1742 |
| BstF5I | GGATG | 4 cut(s) | 520, 1233, 1252, 1757 |
| BstFNI | CGCG | 1 cut(s) | 1744 |
| BstKTI | GATC | 8 cut(s) | 682, 913, 1027, 1132, 1269, 1339, 1426, 1721 |
| BstMAI | GTCTC | 2 cut(s) | 782, 1792 |
| BstMBI | GATC | 8 cut(s) | 679, 910, 1024, 1129, 1266, 1336, 1423, 1718 |
| BstMCI | CGRYCG | 3 cut(s) | 1269, 1688, 1748 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 152, 560, 727, 766, 1184, 1271, 1388, 1646, 1744 |
| BstNI | CCWGG | 2 cut(s) | 148, 527 |
| BstNSI | RCATGY | 1 cut(s) | 760 |
| BstSCI | CCNGG | 3 cut(s) | 146, 525, 1747 |
| BstSFI | CTRYAG | 3 cut(s) | 316, 1655, 1714 |
| BstSLI | GKGCMC | 1 cut(s) | 125 |
| BstUI | CGCG | 1 cut(s) | 1744 |
| BstV1I | GCAGC | 4 cut(s) | 142, 145, 713, 1641 |
| BstV2I | GAAGAC | 1 cut(s) | 693 |
| BstX2I | RGATCY | 1 cut(s) | 1129 |
| BstYI | RGATCY | 1 cut(s) | 1129 |
| BstZI | CGGCCG | 2 cut(s) | 1685, 1745 |
| BsuRI | GGCC | 4 cut(s) | 341, 850, 1687, 1747 |
| BtgI | CCRYGG | 1 cut(s) | 1742 |
| BtsCI | GGATG | 4 cut(s) | 520, 1233, 1252, 1757 |
| BtsI | GCAGTG | 1 cut(s) | 925 |
| BtsIMutI | CAGTG | 4 cut(s) | 675, 925, 1487, 1846 |
| Cac8I | GCNNGC | 2 cut(s) | 762, 1728 |
| CciI | TCATGA | 2 cut(s) | 637, 1339 |
| Cfr10I | RCCGGY | 1 cut(s) | 1331 |
| Cfr13I | GGNCC | 5 cut(s) | 340, 928, 1512, 1540, 1774 |
| Cfr42I | CCGCGG | 1 cut(s) | 1745 |
| CseI | GACGC | 1 cut(s) | 1472 |
| Csp6I | GTAC | 2 cut(s) | 1049, 1285 |
| CviQI | GTAC | 2 cut(s) | 1049, 1285 |
| DdeI | CTNAG | 6 cut(s) | 503, 971, 1212, 1260, 1345, 1474 |
| DpnI | GATC | 8 cut(s) | 681, 912, 1026, 1131, 1268, 1338, 1425, 1720 |
| DpnII | GATC | 8 cut(s) | 679, 910, 1024, 1129, 1266, 1336, 1423, 1718 |
| DraIII | CACNNNGTG | 1 cut(s) | 1184 |
| EaeI | YGGCCR | 3 cut(s) | 848, 1685, 1745 |
| EagI | CGGCCG | 2 cut(s) | 1685, 1745 |
| Eam1104I | CTCTTC | 1 cut(s) | 1089 |
| EarI | CTCTTC | 1 cut(s) | 1089 |
| EciI | GGCGGA | 2 cut(s) | 1247, 1318 |
| Ecl136II | GAGCTC | 1 cut(s) | 1579 |
| EclXI | CGGCCG | 2 cut(s) | 1685, 1745 |
| Eco24I | GRGCYC | 1 cut(s) | 1581 |
| Eco31I | GGTCTC | 1 cut(s) | 782 |
| Eco47I | GGWCC | 4 cut(s) | 928, 1512, 1540, 1774 |
| Eco52I | CGGCCG | 2 cut(s) | 1685, 1745 |
| Eco53kI | GAGCTC | 1 cut(s) | 1579 |
| Eco57I | CTGAAG | 3 cut(s) | 1065, 1164, 1260 |
| Eco72I | CACGTG | 1 cut(s) | 538 |
| Eco88I | CYCGRG | 1 cut(s) | 883 |
| EcoICRI | GAGCTC | 1 cut(s) | 1579 |
| EcoRI | GAATTC | 1 cut(s) | 498 |
| EcoRII | CCWGG | 2 cut(s) | 146, 525 |
| EcoT22I | ATGCAT | 1 cut(s) | 1401 |
| EcoT38I | GRGCYC | 1 cut(s) | 1581 |
| FaqI | GGGAC | 1 cut(s) | 1553 |
| FbaI | TGATCA | 2 cut(s) | 1024, 1336 |
| FblI | GTMKAC | 1 cut(s) | 333 |
| Fnu4HI | GCNGC | 7 cut(s) | 156, 159, 702, 1553, 1655, 1688, 1745 |
| FokI | GGATG | 4 cut(s) | 507, 1240, 1259, 1764 |
| FriOI | GRGCYC | 1 cut(s) | 1581 |
| Fsp4HI | GCNGC | 7 cut(s) | 156, 159, 702, 1553, 1655, 1688, 1745 |
| FspBI | CTAG | 6 cut(s) | 162, 191, 371, 402, 482, 1094 |
| GluI | GCNGC | 7 cut(s) | 156, 159, 702, 1553, 1655, 1688, 1745 |
| GsaI | CCCAGC | 1 cut(s) | 864 |
| HaeIII | GGCC | 4 cut(s) | 341, 850, 1687, 1747 |
| HapII | CCGG | 3 cut(s) | 1332, 1361, 1748 |
| HgaI | GACGC | 1 cut(s) | 1472 |
| HincII | GTYRAC | 2 cut(s) | 880, 942 |
| HindII | GTYRAC | 2 cut(s) | 880, 942 |
| HinfI | GANTC | 4 cut(s) | 473, 881, 1106, 1343 |
| HpaI | GTTAAC | 1 cut(s) | 942 |
| HpaII | CCGG | 3 cut(s) | 1332, 1361, 1748 |
| HphI | GGTGA | 3 cut(s) | 1214, 1232, 1346 |
| Hpy166II | GTNNAC | 6 cut(s) | 123, 334, 464, 880, 942, 1223 |
| Hpy188I | TCNGA | 5 cut(s) | 241, 504, 1007, 1279, 1822 |
| Hpy8I | GTNNAC | 6 cut(s) | 123, 334, 464, 880, 942, 1223 |
| HpyAV | CCTTC | 6 cut(s) | 105, 379, 754, 805, 919, 1558 |
| HpyCH4III | ACNGT | 2 cut(s) | 250, 1850 |
| HpyCH4IV | ACGT | 3 cut(s) | 537, 1054, 1114 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 152, 560, 727, 766, 1184, 1271, 1388, 1646, 1744 |
| HpyF3I | CTNAG | 6 cut(s) | 503, 971, 1212, 1260, 1345, 1474 |
| HpySE526I | ACGT | 3 cut(s) | 537, 1054, 1114 |
| Kpn2I | TCCGGA | 1 cut(s) | 1360 |
| Ksp22I | TGATCA | 2 cut(s) | 1024, 1336 |
| KspAI | GTTAAC | 1 cut(s) | 942 |
| KspI | CCGCGG | 1 cut(s) | 1745 |
| Kzo9I | GATC | 8 cut(s) | 679, 910, 1024, 1129, 1266, 1336, 1423, 1718 |
| LmnI | GCTCC | 1 cut(s) | 1846 |
| Lsp1109I | GCAGC | 4 cut(s) | 142, 145, 713, 1641 |
| LweI | GCATC | 7 cut(s) | 292, 724, 968, 1099, 1237, 1369, 1742 |
| MaeI | CTAG | 6 cut(s) | 162, 191, 371, 402, 482, 1094 |
| MaeII | ACGT | 3 cut(s) | 537, 1054, 1114 |
| MaeIII | GTNAC | 1 cut(s) | 1804 |
| MalI | GATC | 8 cut(s) | 681, 912, 1026, 1131, 1268, 1338, 1425, 1720 |
| MbiI | CCGCTC | 1 cut(s) | 1552 |
| MboI | GATC | 8 cut(s) | 679, 910, 1024, 1129, 1266, 1336, 1423, 1718 |
| MboII | GAAGA | 5 cut(s) | 239, 698, 1076, 1627, 1672 |
| MfeI | CAATTG | 1 cut(s) | 710 |
| MflI | RGATCY | 1 cut(s) | 1129 |
| MhlI | GDGCHC | 3 cut(s) | 125, 1295, 1581 |
| MlyI | GAGTC | 3 cut(s) | 875, 1100, 1337 |
| MmeI | TCCRAC | 3 cut(s) | 355, 1752, 1809 |
| Mph1103I | ATGCAT | 1 cut(s) | 1401 |
| MroI | TCCGGA | 1 cut(s) | 1360 |
| MseI | TTAA | 5 cut(s) | 414, 941, 1101, 1190, 1852 |
| MslI | CAYNNNNRTG | 1 cut(s) | 642 |
| MspA1I | CMGCKG | 1 cut(s) | 1744 |
| MspI | CCGG | 3 cut(s) | 1332, 1361, 1748 |
| MspR9I | CCNGG | 3 cut(s) | 148, 527, 1749 |
| MunI | CAATTG | 1 cut(s) | 710 |
| Mva1269I | GAATGC | 1 cut(s) | 1401 |
| MvaI | CCWGG | 2 cut(s) | 148, 527 |
| MvnI | CGCG | 1 cut(s) | 1744 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 152, 560, 727, 766, 1184, 1271, 1388, 1646, 1744 |
| NciI | CCSGG | 1 cut(s) | 1749 |
| NdeII | GATC | 8 cut(s) | 679, 910, 1024, 1129, 1266, 1336, 1423, 1718 |
| NlaIV | GGNNCC | 3 cut(s) | 1131, 1487, 1541 |
| NmeAIII | GCCGAG | 1 cut(s) | 790 |
| NsiI | ATGCAT | 1 cut(s) | 1401 |
| NspI | RCATGY | 1 cut(s) | 760 |
| NspV | TTCGAA | 1 cut(s) | 496 |
| PagI | TCATGA | 2 cut(s) | 637, 1339 |
| PctI | GAATGC | 1 cut(s) | 1401 |
| PfeI | GAWTC | 1 cut(s) | 473 |
| PflFI | GACNNNGTC | 1 cut(s) | 1346 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1771 |
| PkrI | GCNGC | 7 cut(s) | 157, 160, 703, 1554, 1656, 1689, 1746 |
| Ple19I | CGATCG | 1 cut(s) | 1269 |
| PleI | GAGTC | 3 cut(s) | 875, 1100, 1337 |
| PmaCI | CACGTG | 1 cut(s) | 538 |
| PmlI | CACGTG | 1 cut(s) | 538 |
| PpsI | GAGTC | 3 cut(s) | 875, 1100, 1337 |
| Ppu21I | YACGTR | 1 cut(s) | 538 |
| PsiI | TTATAA | 1 cut(s) | 1449 |
| Psp124BI | GAGCTC | 1 cut(s) | 1581 |
| Psp6I | CCWGG | 2 cut(s) | 146, 525 |
| PspCI | CACGTG | 1 cut(s) | 538 |
| PspFI | CCCAGC | 1 cut(s) | 860 |
| PspGI | CCWGG | 2 cut(s) | 146, 525 |
| PspN4I | GGNNCC | 3 cut(s) | 1131, 1487, 1541 |
| PspPI | GGNCC | 5 cut(s) | 340, 928, 1512, 1540, 1774 |
| PstI | CTGCAG | 1 cut(s) | 1659 |
| PsuI | RGATCY | 1 cut(s) | 1129 |
| PsyI | GACNNNGTC | 1 cut(s) | 1346 |
| PvuI | CGATCG | 1 cut(s) | 1269 |
| RsaI | GTAC | 2 cut(s) | 1050, 1286 |
| RsaNI | GTAC | 2 cut(s) | 1049, 1285 |
| RseI | CAYNNNNRTG | 1 cut(s) | 642 |
| SacI | GAGCTC | 1 cut(s) | 1581 |
| SacII | CCGCGG | 1 cut(s) | 1745 |
| SaqAI | TTAA | 5 cut(s) | 414, 941, 1101, 1190, 1852 |
| SatI | GCNGC | 7 cut(s) | 156, 159, 702, 1553, 1655, 1688, 1745 |
| Sau3AI | GATC | 8 cut(s) | 679, 910, 1024, 1129, 1266, 1336, 1423, 1718 |
| Sau96I | GGNCC | 5 cut(s) | 340, 928, 1512, 1540, 1774 |
| SchI | GAGTC | 3 cut(s) | 875, 1100, 1337 |
| ScrFI | CCNGG | 3 cut(s) | 148, 527, 1749 |
| SduI | GDGCHC | 3 cut(s) | 125, 1295, 1581 |
| SfaNI | GCATC | 7 cut(s) | 292, 724, 968, 1099, 1237, 1369, 1742 |
| SfcI | CTRYAG | 3 cut(s) | 316, 1655, 1714 |
| Sfr303I | CCGCGG | 1 cut(s) | 1745 |
| SfuI | TTCGAA | 1 cut(s) | 496 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1331 |
| SgrBI | CCGCGG | 1 cut(s) | 1745 |
| SinI | GGWCC | 4 cut(s) | 928, 1512, 1540, 1774 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 642 |
| SmlI | CTYRAG | 3 cut(s) | 171, 1439, 1547 |
| SmoI | CTYRAG | 3 cut(s) | 171, 1439, 1547 |
| SpeI | ACTAGT | 1 cut(s) | 370 |
| SsiI | CCGC | 6 cut(s) | 1232, 1329, 1552, 1688, 1742, 1744 |
| SspMI | CTAG | 6 cut(s) | 162, 191, 371, 402, 482, 1094 |
| SstI | GAGCTC | 1 cut(s) | 1581 |
| StyD4I | CCNGG | 3 cut(s) | 146, 525, 1747 |
| TaaI | ACNGT | 2 cut(s) | 250, 1850 |
| TaiI | ACGT | 3 cut(s) | 540, 1057, 1117 |
| TaqI | TCGA | 5 cut(s) | 489, 496, 682, 1109, 1779 |
| TaqII | GACCGA | 1 cut(s) | 945 |
| TatI | WGTACW | 2 cut(s) | 1048, 1284 |
| TauI | GCSGC | 3 cut(s) | 1555, 1690, 1747 |
| TfiI | GAWTC | 1 cut(s) | 473 |
| Tru1I | TTAA | 5 cut(s) | 414, 941, 1101, 1190, 1852 |
| Tru9I | TTAA | 5 cut(s) | 414, 941, 1101, 1190, 1852 |
| TscAI | CASTG | 4 cut(s) | 682, 925, 1487, 1853 |
| TseI | GCWGC | 4 cut(s) | 155, 158, 701, 1654 |
| TspDTI | ATGAA | 8 cut(s) | 626, 660, 765, 1109, 1343, 1467, 1506, 1532 |
| TspGWI | ACGGA | 3 cut(s) | 1044, 1240, 1823 |
| TspRI | CASTG | 4 cut(s) | 682, 925, 1487, 1853 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1346 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1771 |
| VneI | GTGCAC | 1 cut(s) | 121 |
| VpaK11BI | GGWCC | 4 cut(s) | 928, 1512, 1540, 1774 |
| XapI | RAATTY | 3 cut(s) | 498, 633, 1816 |
| XbaI | TCTAGA | 1 cut(s) | 401 |
| XceI | RCATGY | 1 cut(s) | 760 |
| XmiI | GTMKAC | 1 cut(s) | 333 |
| XspI | CTAG | 6 cut(s) | 162, 191, 371, 402, 482, 1094 |
| Zsp2I | ATGCAT | 1 cut(s) | 1401 |