Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00205

Orthogroup ID

OG0000463

Physical Location & Seq

Genomic Coordinates Reverse (-)

4815 .. 11749

Gene Structure 6935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G005280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2103 bp

ATGGTTGGCATCTTGGTAATCCTGGACCGCTTTCTTTTTCTCGTAATGTATCTGAATTCGTTTAGGATCTTAAAGGCAACTGCATTACAAATGATCGTGGTAAGTGAAAGGAGAAGGTCTATGTATTGGGTTTTGCTCTGCATGTCATCATCTTTGTCTTCTCTGAAAGTTGGTTCGAAGCCTAGCAAGTCAGATTATCCCGATAAGAAAAGGCACCGGAGTGAGGCTTGGAGTCAAGAAGACGATGAAGGAATTGTTGCTCTACAACAGAAAGATCAAGTTGAAAGTATAAGAAGTTCGGATGAAATTATGATGATGATGATGCAGCAGCTGCTAATGTTGATGATGAACAACACTACCCATTTACAGATTTCTAGATGCGCATTGCTCAACTTTGTTCAAGCGAATCAGGTTGTTATTATTTATGGTCCAACTGGGTGTGGAAAAACTACACAGATACCCCAATATCTACACGAGGCCGGATATAGCAAAAAAGGGAAGATTGGGTGCACACAGCCACATGGAGTTGTTGCTATGAGTGCTGCTTCCAGAGTTTCTAAAGAAGTGGGTGTCAAGCTCGGGCATGAGGTAGGATATTCCATTCCTTCTGAGGATTGCACATCTGAAAAGACTGTTTTGAAATATATGACAGATGAAATGTTGTTGCATGAACTCTATGGTGAACCAGATTTGATAAGCTATAGTGTGTTGGTGGATATTCTTCGATTTAGAACCAAACTTAAGATAGTCATCTCCACCGGAACTACTGATCATGCTGATAAGTTAAGTGGTTATTTCAATAAAGCTCCCATTCTCAAAATCCTACTAACAAGGCGGATGAGTTATGGTCACACCACAATTGAATACATGAAAGCACCAATAGTAGATTACTTGGATGTAGCAATAGGCACTGCACTTCAAATCCATGCGACAGAACCAACTGGGGGAGATATTTTGGTCTTACTCACCGATCATGAAGAGATTGAAACAGCAGAAGAAGAATTGGCTGAAGAGCTGATTATCTGCCCCGTACATGAAAACCTGCCTGCTAGGCTTCAAGCAAAAGCTTTTGAGCCCACACCTCAAGGGGCCAGGAAGGTTTTCCTTGCCACAGTGGCTATCAATGGGGCCAAATATGTCATTGACCCTGGGTTTTGCAAGAGGAAGTGTTATAATCCAAGAACTGGGATAGAGTTAATGCAAGTCGCTCACATCTCTAAGGCAACTGCATTACAAAGGATCCTGGCAAGTGAAAGGGGAAATCGAAAGGCCCCTGCCAAGTGCTTCCGTTTATATACTGATCTACAACGGACTAACCTTGCAAATGCTGTTCTTAGGCTTCTGCATCTTGGGGTTAATTTATCACAGTTTGAGTTTATTGATCCTCCACCTGCTGAAGCAATGACAAAAGCCTCACGAGTGTTATTTATACTAGGTGCTGTAAATACTGAGGGTGAGCTTTCTAGGGTTGATCATATGCTGTCTAGGGCGGTAGTTGCTTCAATTGAGTACAAATGCTCAGCTGAGGTGATTTCTATTGTTGCCATGCTTTCCACCGGTGGTGATTCAGTCTTCTATCGACCACAGGACAAACATACAGATGCCGACAATGCGCGATTGCATTTTCATTCTGGGAATGTGGGGGATCACATTGCATTGCTTAGAGTTTACAATGCATGGAAAGAGGCAAATTTCTCAACACAGTGGTGTCACGAAAACTACATACGAGTTAGAAGCATGAGGAGAGCAAGACATATTCGGGATAAGCTTGAGCAGCTCTTGGAGAAGGTCGGCATAGAGCTCACCTCAAATCTAGTTGATTTGGAGCCTATAGAGAAGGCTATTACCACCGGTTTCTTACCTCATTCTGCAAAGCAGCAAATGAATGGATCTTATAGAACAGTCAAAGAGCCAGATTCACCAACTATCCGTATACATCCCAACTCGGGGATGGCACAAGTGCTCCCGATATGGGTTGTGTATCATGATTTGGTGCCCACAACAGGAGAATATATGAGACAGGTAACAGAGATCAAGCCGGAATGGTTGGTTGAAATAGCTCCTCATTATTACCGGCTGGAGTATGTACTGGATGTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

700

Amino Acids

78.85

Weight (kDa)

7.64

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HA2_C	PF21010	493 - 553	1.4e-08	Helicase associated domain (HA2), ratchet-like
OB_NTP_bind	PF07717	611 - 690	3.4e-18	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca	FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica	MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica	Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis	pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis	RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata	RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora	Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa	Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha	Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana	Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1173
AarI	CACCTGC	1 cut(s)	1399
Acc16I	TGCGCA	1 cut(s)	382
Acc36I	ACCTGC	2 cut(s)	1050, 1399
AccB1I	GGYRCC	2 cut(s)	213, 1993
AccB7I	CCANNNNNTGG	1 cut(s)	1184
AccI	GTMKAC	1 cut(s)	1933
AccII	CGCG	1 cut(s)	1615
AciI	CCGC	3 cut(s)	28, 835, 1490
AclWI	GGATC	6 cut(s)	74, 1234, 1247, 1376, 1653, 1897
AcsI	RAATTY	2 cut(s)	55, 1690
AcuI	CTGAAG	2 cut(s)	1029, 1416
AfaI	GTAC	3 cut(s)	1032, 1511, 2088
AfiI	CCNNNNNNNGG	7 cut(s)	223, 944, 1184, 1946, 1947, 1972, 2003
AflII	CTTAAG	1 cut(s)	740
AgeI	ACCGGT	2 cut(s)	1556, 1850
AjnI	CCWGG	4 cut(s)	21, 1091, 1147, 1242
AleI	CACNNNNGTG	2 cut(s)	219, 1705
Alw21I	GWGCWC	3 cut(s)	512, 1803, 1965
Alw26I	GTCTC	1 cut(s)	2011
Alw44I	GTGCAC	1 cut(s)	508
AlwI	GGATC	6 cut(s)	74, 1234, 1247, 1376, 1653, 1897
AlwNI	CAGNNNCTG	1 cut(s)	331
Ama87I	CYCGRG	2 cut(s)	578, 1945
AoxI	GGCC	4 cut(s)	477, 1089, 1128, 1269
ApaLI	GTGCAC	1 cut(s)	508
ApeKI	GCWGC	6 cut(s)	325, 328, 331, 542, 1774, 1876
ApoI	RAATTY	2 cut(s)	55, 1690
AsiGI	ACCGGT	2 cut(s)	1556, 1850
Asp700I	GAANNNNTTC	1 cut(s)	1100
AspLEI	GCGC	2 cut(s)	383, 1615
AspS9I	GGNCC	5 cut(s)	25, 428, 1089, 1128, 1270
AsuHPI	GGTGA	7 cut(s)	692, 958, 1466, 1540, 1574, 1795, 1911
AsuII	TTCGAA	1 cut(s)	176
AvaI	CYCGRG	2 cut(s)	578, 1945
AvaII	GGWCC	2 cut(s)	25, 428
BaeGI	GKGCMC	2 cut(s)	512, 1998
BamHI	GGATCC	1 cut(s)	1239
BanI	GGYRCC	2 cut(s)	213, 1993
BanII	GRGCYC	2 cut(s)	1077, 1803
BauI	CACGAG	2 cut(s)	473, 1416
BbsI	GAAGAC	3 cut(s)	150, 246, 1564
Bbv12I	GWGCWC	3 cut(s)	512, 1803, 1965
BbvCI	CCTCAGC	1 cut(s)	1524
BbvI	GCAGC	6 cut(s)	318, 337, 340, 529, 1786, 1888
BccI	CCATC	1 cut(s)	1945
BciT130I	CCWGG	4 cut(s)	23, 1093, 1149, 1244
BclI	TGATCA	2 cut(s)	769, 1471
BcoDI	GTCTC	1 cut(s)	2011
BfaI	CTAG	7 cut(s)	183, 375, 1050, 1433, 1464, 1485, 1814
BfmI	CTRYAG	2 cut(s)	700, 1830
BfrI	CTTAAG	1 cut(s)	740
BfuAI	ACCTGC	2 cut(s)	1050, 1399
BglI	GCCNNNNNGGC	2 cut(s)	1051, 1115
BisI	GCNGC	6 cut(s)	326, 329, 332, 543, 1775, 1877
BlpI	GCTNAGC	1 cut(s)	1519
BlsI	GCNGC	6 cut(s)	327, 330, 333, 544, 1776, 1878
Bme1390I	CCNGG	4 cut(s)	23, 1093, 1149, 1244
Bme18I	GGWCC	2 cut(s)	25, 428
BmeT110I	CYCGRG	2 cut(s)	578, 1945
BmgT120I	GGNCC	5 cut(s)	25, 428, 1089, 1128, 1270
BmiI	GGNNCC	7 cut(s)	215, 1090, 1129, 1241, 1272, 1827, 1995
BmrFI	CCNGG	4 cut(s)	23, 1093, 1149, 1244
BmrI	ACTGGG	3 cut(s)	444, 951, 1194
BmsI	GCATC	5 cut(s)	18, 312, 368, 1354, 1591
BmuI	ACTGGG	3 cut(s)	444, 951, 1194
BpiI	GAAGAC	3 cut(s)	150, 246, 1564
BplI	GAGNNNNNCTC	2 cut(s)	1790, 1822
BpmI	CTGGAG	1 cut(s)	2099
Bpu10I	CCTNAGC	1 cut(s)	1524
Bpu1102I	GCTNAGC	1 cut(s)	1519
Bpu14I	TTCGAA	1 cut(s)	176
BpuEI	CTTGAG	2 cut(s)	1068, 1790
BsaBI	GATNNNNATC	1 cut(s)	749
BsaJI	CCNNGG	2 cut(s)	1147, 1148
BsaWI	WCCGGW	4 cut(s)	216, 758, 1556, 1850
BsaXI	ACNNNNNCTCC	2 cut(s)	1947, 1977
Bsc4I	CCNNNNNNNGG	7 cut(s)	223, 944, 1184, 1946, 1947, 1972, 2003
Bse118I	RCCGGY	3 cut(s)	1556, 1850, 2073
Bse1I	ACTGG	4 cut(s)	439, 946, 1189, 2094
Bse3DI	GCAATG	4 cut(s)	383, 1407, 1650, 1655
Bse8I	GATNNNNATC	1 cut(s)	749
BseBI	CCWGG	4 cut(s)	23, 1093, 1149, 1244
BseDI	CCNNGG	2 cut(s)	1147, 1148
BseGI	GGATG	6 cut(s)	307, 843, 901, 1936, 1956, 2098
BseJI	GATNNNNATC	1 cut(s)	749
BseLI	CCNNNNNNNGG	7 cut(s)	223, 944, 1184, 1946, 1947, 1972, 2003
BseMI	GCAATG	4 cut(s)	383, 1407, 1650, 1655
BseMII	CTCAG	4 cut(s)	600, 1440, 1515, 1533
BseNI	ACTGG	4 cut(s)	439, 946, 1189, 2094
BseRI	GAGGAG	2 cut(s)	1756, 2052
BseSI	GKGCMC	2 cut(s)	512, 1998
BseXI	GCAGC	6 cut(s)	318, 337, 340, 529, 1786, 1888
BsgI	GTGCAG	1 cut(s)	897
Bsh1236I	CGCG	1 cut(s)	1615
BshFI	GGCC	4 cut(s)	479, 1091, 1130, 1271
BshNI	GGYRCC	2 cut(s)	213, 1993
BshTI	ACCGGT	2 cut(s)	1556, 1850
BsiHKAI	GWGCWC	3 cut(s)	512, 1803, 1965
BsiHKCI	CYCGRG	2 cut(s)	578, 1945
BsiSI	CCGG	7 cut(s)	217, 480, 759, 1557, 1851, 2039, 2074
BslI	CCNNNNNNNGG	7 cut(s)	223, 944, 1184, 1946, 1947, 1972, 2003
BsmAI	GTCTC	1 cut(s)	2011
BsnI	GGCC	4 cut(s)	479, 1091, 1130, 1271
BsoBI	CYCGRG	2 cut(s)	578, 1945
Bsp119I	TTCGAA	1 cut(s)	176
Bsp1286I	GDGCHC	5 cut(s)	512, 1077, 1803, 1965, 1998
Bsp1720I	GCTNAGC	1 cut(s)	1519
BspACI	CCGC	3 cut(s)	28, 835, 1490
BspANI	GGCC	4 cut(s)	479, 1091, 1130, 1271
BspCNI	CTCAG	4 cut(s)	601, 1441, 1516, 1532
BspFNI	CGCG	1 cut(s)	1615
BspHI	TCATGA	2 cut(s)	973, 1984
BspLI	GGNNCC	7 cut(s)	215, 1090, 1129, 1241, 1272, 1827, 1995
BspMI	ACCTGC	2 cut(s)	1050, 1399
BspPI	GGATC	6 cut(s)	74, 1234, 1247, 1376, 1653, 1897
BspQI	GCTCTTC	1 cut(s)	1005
BspT104I	TTCGAA	1 cut(s)	176
BspT107I	GGYRCC	2 cut(s)	213, 1993
BspTI	CTTAAG	1 cut(s)	740
BsrDI	GCAATG	4 cut(s)	383, 1407, 1650, 1655
BsrFI	RCCGGY	3 cut(s)	1556, 1850, 2073
BsrI	ACTGG	4 cut(s)	439, 946, 1189, 2094
BssAI	RCCGGY	3 cut(s)	1556, 1850, 2073
BssECI	CCNNGG	2 cut(s)	1147, 1148
BssNAI	GTATAC	1 cut(s)	1934
BssSI	CACGAG	2 cut(s)	473, 1416
Bst1107I	GTATAC	1 cut(s)	1934
Bst2BI	CACGAG	2 cut(s)	473, 1416
Bst2UI	CCWGG	4 cut(s)	23, 1093, 1149, 1244
Bst4CI	ACNGT	5 cut(s)	634, 1114, 1368, 1704, 1903
Bst6I	CTCTTC	2 cut(s)	972, 1005
BstAFI	CTTAAG	1 cut(s)	740
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstBI	TTCGAA	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	1047
BstDEI	CTNAG	7 cut(s)	609, 1218, 1334, 1449, 1519, 1524, 1661
BstF5I	GGATG	6 cut(s)	307, 843, 901, 1936, 1956, 2098
BstFNI	CGCG	1 cut(s)	1615
BstHHI	GCGC	2 cut(s)	383, 1615
BstMAI	GTCTC	1 cut(s)	2011
BstMWI	GCNNNNNNNGC	7 cut(s)	331, 539, 1051, 1115, 1496, 1610, 1774
BstNI	CCWGG	4 cut(s)	23, 1093, 1149, 1244
BstNSI	RCATGY	1 cut(s)	145
BstSCI	CCNGG	4 cut(s)	21, 1091, 1147, 1242
BstSFI	CTRYAG	2 cut(s)	700, 1830
BstSLI	GKGCMC	2 cut(s)	512, 1998
BstUI	CGCG	1 cut(s)	1615
BstV1I	GCAGC	6 cut(s)	318, 337, 340, 529, 1786, 1888
BstV2I	GAAGAC	3 cut(s)	150, 246, 1564
BstX2I	RGATCY	3 cut(s)	66, 1239, 1889
BstYI	RGATCY	3 cut(s)	66, 1239, 1889
BstZ17I	GTATAC	1 cut(s)	1934
BsuRI	GGCC	4 cut(s)	479, 1091, 1130, 1271
BtsCI	GGATG	6 cut(s)	307, 843, 901, 1936, 1956, 2098
BtsI	GCAGTG	1 cut(s)	909
BtsIMutI	CAGTG	3 cut(s)	909, 1119, 1709
BveI	ACCTGC	2 cut(s)	1050, 1399
Cac8I	GCNNGC	1 cut(s)	1047
CaiI	CAGNNNCTG	1 cut(s)	331
CciI	TCATGA	2 cut(s)	973, 1984
CfoI	GCGC	2 cut(s)	383, 1615
Cfr10I	RCCGGY	3 cut(s)	1556, 1850, 2073
Cfr13I	GGNCC	5 cut(s)	25, 428, 1089, 1128, 1270
Csp6I	GTAC	3 cut(s)	1031, 1510, 2087
CspAI	ACCGGT	2 cut(s)	1556, 1850
CviQI	GTAC	3 cut(s)	1031, 1510, 2087
DdeI	CTNAG	7 cut(s)	609, 1218, 1334, 1449, 1519, 1524, 1661
Eam1104I	CTCTTC	2 cut(s)	972, 1005
EarI	CTCTTC	2 cut(s)	972, 1005
EciI	GGCGGA	1 cut(s)	850
Ecl136II	GAGCTC	1 cut(s)	1801
Eco24I	GRGCYC	2 cut(s)	1077, 1803
Eco47I	GGWCC	2 cut(s)	25, 428
Eco53kI	GAGCTC	1 cut(s)	1801
Eco57I	CTGAAG	2 cut(s)	1029, 1416
Eco88I	CYCGRG	2 cut(s)	578, 1945
EcoICRI	GAGCTC	1 cut(s)	1801
EcoO109I	RGGNCCY	1 cut(s)	1270
EcoRI	GAATTC	1 cut(s)	55
EcoRII	CCWGG	4 cut(s)	21, 1091, 1147, 1242
EcoT22I	ATGCAT	1 cut(s)	1678
EcoT38I	GRGCYC	2 cut(s)	1077, 1803
FauNDI	CATATG	1 cut(s)	1476
FbaI	TGATCA	2 cut(s)	769, 1471
FblI	GTMKAC	1 cut(s)	1933
Fnu4HI	GCNGC	6 cut(s)	326, 329, 332, 543, 1775, 1877
FokI	GGATG	5 cut(s)	314, 850, 908, 1923, 1963
FriOI	GRGCYC	2 cut(s)	1077, 1803
Fsp4HI	GCNGC	6 cut(s)	326, 329, 332, 543, 1775, 1877
FspAI	RTGCGCAY	1 cut(s)	382
FspBI	CTAG	7 cut(s)	183, 375, 1050, 1433, 1464, 1485, 1814
FspI	TGCGCA	1 cut(s)	382
GlaI	GCGC	2 cut(s)	382, 1614
GluI	GCNGC	6 cut(s)	326, 329, 332, 543, 1775, 1877
GsuI	CTGGAG	1 cut(s)	2099
HaeIII	GGCC	4 cut(s)	479, 1091, 1130, 1271
HapII	CCGG	7 cut(s)	217, 480, 759, 1557, 1851, 2039, 2074
HhaI	GCGC	2 cut(s)	383, 1615
Hin6I	GCGC	2 cut(s)	381, 1613
HinP1I	GCGC	2 cut(s)	381, 1613
HindIII	AAGCTT	2 cut(s)	1065, 1766
HinfI	GANTC	4 cut(s)	232, 406, 1565, 1916
HpaII	CCGG	7 cut(s)	217, 480, 759, 1557, 1851, 2039, 2074
HphI	GGTGA	7 cut(s)	692, 958, 1466, 1540, 1574, 1795, 1911
Hpy166II	GTNNAC	4 cut(s)	510, 683, 1669, 1934
Hpy188I	TCNGA	6 cut(s)	54, 165, 193, 301, 610, 625
Hpy8I	GTNNAC	4 cut(s)	510, 683, 1669, 1934
HpyAV	CCTTC	6 cut(s)	108, 242, 615, 1090, 1780, 1831
HpyCH4III	ACNGT	5 cut(s)	634, 1114, 1368, 1704, 1903
HpyF10VI	GCNNNNNNNGC	7 cut(s)	331, 539, 1051, 1115, 1496, 1610, 1774
HpyF3I	CTNAG	7 cut(s)	609, 1218, 1334, 1449, 1519, 1524, 1661
HspAI	GCGC	2 cut(s)	381, 1613
Ksp22I	TGATCA	2 cut(s)	769, 1471
LguI	GCTCTTC	1 cut(s)	1005
LmnI	GCTCC	4 cut(s)	811, 1825, 1968, 2065
Lsp1109I	GCAGC	6 cut(s)	318, 337, 340, 529, 1786, 1888
LweI	GCATC	5 cut(s)	18, 312, 368, 1354, 1591
MaeI	CTAG	7 cut(s)	183, 375, 1050, 1433, 1464, 1485, 1814
MaeIII	GTNAC	3 cut(s)	848, 1709, 2023
MboII	GAAGA	9 cut(s)	150, 251, 511, 713, 989, 1007, 1010, 1022, 1564
MfeI	CAATTG	2 cut(s)	858, 1503
MflI	RGATCY	3 cut(s)	66, 1239, 1889
MhlI	GDGCHC	5 cut(s)	512, 1077, 1803, 1965, 1998
MluCI	AATT	8 cut(s)	55, 252, 306, 858, 1001, 1357, 1503, 1690
MlyI	GAGTC	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	455
Mph1103I	ATGCAT	1 cut(s)	1678
MroXI	GAANNNNTTC	1 cut(s)	1100
MseI	TTAA	6 cut(s)	71, 741, 785, 1196, 1356, 2101
MslI	CAYNNNNRTG	3 cut(s)	219, 1599, 1705
MspA1I	CMGCKG	2 cut(s)	331, 1523
MspCI	CTTAAG	1 cut(s)	740
MspI	CCGG	7 cut(s)	217, 480, 759, 1557, 1851, 2039, 2074
MspR9I	CCNGG	4 cut(s)	23, 1093, 1149, 1244
MunI	CAATTG	2 cut(s)	858, 1503
MvaI	CCWGG	4 cut(s)	23, 1093, 1149, 1244
MvnI	CGCG	1 cut(s)	1615
MwoI	GCNNNNNNNGC	7 cut(s)	331, 539, 1051, 1115, 1496, 1610, 1774
NdeI	CATATG	1 cut(s)	1476
NlaIV	GGNNCC	7 cut(s)	215, 1090, 1129, 1241, 1272, 1827, 1995
NmuCI	GTSAC	2 cut(s)	848, 1709
NsbI	TGCGCA	1 cut(s)	382
NsiI	ATGCAT	1 cut(s)	1678
NspI	RCATGY	1 cut(s)	145
NspV	TTCGAA	1 cut(s)	176
OliI	CACNNNNGTG	2 cut(s)	219, 1705
PagI	TCATGA	2 cut(s)	973, 1984
PaqCI	CACCTGC	1 cut(s)	1399
PasI	CCCWGGG	1 cut(s)	1148
PciSI	GCTCTTC	1 cut(s)	1005
PdmI	GAANNNNTTC	1 cut(s)	1100
PfeI	GAWTC	3 cut(s)	406, 1565, 1916
PflMI	CCANNNNNTGG	1 cut(s)	1184
PfoI	TCCNGGA	1 cut(s)	21
PinAI	ACCGGT	2 cut(s)	1556, 1850
PkrI	GCNGC	6 cut(s)	327, 330, 333, 544, 1776, 1878
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
PsiI	TTATAA	1 cut(s)	1173
Psp124BI	GAGCTC	1 cut(s)	1803
Psp6I	CCWGG	4 cut(s)	21, 1091, 1147, 1242
PspGI	CCWGG	4 cut(s)	21, 1091, 1147, 1242
PspN4I	GGNNCC	7 cut(s)	215, 1090, 1129, 1241, 1272, 1827, 1995
PspPI	GGNCC	5 cut(s)	25, 428, 1089, 1128, 1270
PsrI	GAACNNNNNNTAC	2 cut(s)	280, 312
PstNI	CAGNNNCTG	1 cut(s)	331
PsuI	RGATCY	3 cut(s)	66, 1239, 1889
PvuII	CAGCTG	2 cut(s)	331, 1523
RsaI	GTAC	3 cut(s)	1032, 1511, 2088
RsaNI	GTAC	3 cut(s)	1031, 1510, 2087
RseI	CAYNNNNRTG	3 cut(s)	219, 1599, 1705
SacI	GAGCTC	1 cut(s)	1803
SapI	GCTCTTC	1 cut(s)	1005
SaqAI	TTAA	6 cut(s)	71, 741, 785, 1196, 1356, 2101
SatI	GCNGC	6 cut(s)	326, 329, 332, 543, 1775, 1877
Sau96I	GGNCC	5 cut(s)	25, 428, 1089, 1128, 1270
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	4 cut(s)	23, 1093, 1149, 1244
SduI	GDGCHC	5 cut(s)	512, 1077, 1803, 1965, 1998
SfaNI	GCATC	5 cut(s)	18, 312, 368, 1354, 1591
SfcI	CTRYAG	2 cut(s)	700, 1830
SfuI	TTCGAA	1 cut(s)	176
SgrAI	CRCCGGYG	1 cut(s)	1556
SinI	GGWCC	2 cut(s)	25, 428
SmiMI	CAYNNNNRTG	3 cut(s)	219, 1599, 1705
SmlI	CTYRAG	3 cut(s)	740, 1083, 1769
SmoI	CTYRAG	3 cut(s)	740, 1083, 1769
Sse9I	AATT	8 cut(s)	55, 252, 306, 858, 1001, 1357, 1503, 1690
SsiI	CCGC	3 cut(s)	28, 835, 1490
SspMI	CTAG	7 cut(s)	183, 375, 1050, 1433, 1464, 1485, 1814
SstI	GAGCTC	1 cut(s)	1803
StyD4I	CCNGG	4 cut(s)	21, 1091, 1147, 1242
TaaI	ACNGT	5 cut(s)	634, 1114, 1368, 1704, 1903
TaqI	TCGA	4 cut(s)	176, 724, 1264, 1579
TasI	AATT	8 cut(s)	55, 252, 306, 858, 1001, 1357, 1503, 1690
TatI	WGTACW	2 cut(s)	1509, 2086
TfiI	GAWTC	3 cut(s)	406, 1565, 1916
Tru1I	TTAA	6 cut(s)	71, 741, 785, 1196, 1356, 2101
Tru9I	TTAA	6 cut(s)	71, 741, 785, 1196, 1356, 2101
TscAI	CASTG	3 cut(s)	916, 1119, 1709
TseFI	GTSAC	2 cut(s)	848, 1709
TseI	GCWGC	6 cut(s)	325, 328, 331, 542, 1774, 1876
Tsp45I	GTSAC	2 cut(s)	848, 1709
TspGWI	ACGGA	3 cut(s)	1277, 1324, 1919
TspRI	CASTG	3 cut(s)	916, 1119, 1709
Van91I	CCANNNNNTGG	1 cut(s)	1184
Vha464I	CTTAAG	1 cut(s)	740
VneI	GTGCAC	1 cut(s)	508
VpaK11BI	GGWCC	2 cut(s)	25, 428
XapI	RAATTY	2 cut(s)	55, 1690
XbaI	TCTAGA	1 cut(s)	374
XceI	RCATGY	1 cut(s)	145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1948
XmiI	GTMKAC	1 cut(s)	1933
XmnI	GAANNNNTTC	1 cut(s)	1100
XspI	CTAG	7 cut(s)	183, 375, 1050, 1433, 1464, 1485, 1814
Zsp2I	ATGCAT	1 cut(s)	1678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.