Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002174.1

Orthogroup ID

OG0000463

Physical Location & Seq

Genomic Coordinates Forward (+)

3876 .. 7028

Gene Structure 3153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002174.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3153 bp

atggggtgtgagagcaacctgaagacatgggtgtctgataagttaatagcattgctcggatactctaatccggtagttgttcagtatgttattggattaactaaaaaagcaaactcccaggctggtttggtggacaagcttgtcgaatttggatttgcgtcatcgactgaaacaggggcatttgctgcagatatctttgcaagagtgtgtggtgaaacatctggtttgaagcaatgtgggaaacaagagaggggaggtgcaatgccggtgaggatgatgcagcggacctatgttctgttggattcagatgatggtggtgatgcagagagatgttctgttgaggttgtttctcattctgtgtctgtaacagtggatttcaataagaaaagattcaggaagagggcattgggtcagaaagatggagatgatgatgatgaggttattgcagaacgtgttaaaaggcggaacttgccagataaagatgatcatgaggatggttcagagtcagaagaagagagattgcgtgatcaaagagaaagggagaaattggagcaaagtataaggaagagggacgcagcagccacacgaaaactgacaatgaaaaacttaagacgaaaaggggaagaggaggctgttcgaaaaaccagtggtgatgttgaaggtttaagaagagcttcaagacaagaatatctaaaggaaagacagagaaagaaaatggatgaaatgagggatgatgtagaagatgaacgttacttatttgaaggtgtgaagctcactgaagcagaaaaccgggaattaagttacaagaagcaaatattggagcttatgagaaaaccattaggtctagatgaggctgaaaatgtcactgagtacaggatgccagatgcctatgatgatgaggagcgcggtgttactcaacagaagagattttctgtggctttgcagcgctacaaggacgacagttctggggataaaatgaactcgtttggaaaacataaatcttgggaagatcagcaacttggaaaagcaacattggaatttggttcaaaaaacaaaaaaagggtatctgatgagtatgattttgtatatgaagaccagattgagttcgtcagggggttggtgatcgaggatgataaatttgacaagtttgaggatgataagcaactgcagtccacaaaattacttgagtcaagggaaaaaaccttgaagatgttccaggaggagaggaaaactttacccatcttctcatttcatgatgagttgcttcaagctgttaaagatcatcaggttcttgttattgttggcgaaactggatctggcaaaactacacagattccccagtatttacatgaggcaggatatacaaggcatggaaagattgggtgcacacagccacggcgagttgctgctatgagtgttgctgccagggtttctcaagaaatgggtgtcaagcttggacatgaggtaggttattctattcgttttgaggattgcacgtctgaaaagaccgttttgaaatatatgactgatggaatgttattgcgtgaatttcttgctgaaccagatctggcaagctatagtgtgctgatggtggatgaggcccatgagagaacactctctactgatattctatttgcattagtaaaggatattgctcgatttcgacccggttttaagctgcttatctcgagtgcaacacttgatgctgtgaagttcagtaattattttgattgtgccccaattttcaacattccagggaggcggtttcctgtcgatatataccacacaaaagcaccagaagctgattacttagatgctgcaattgctgctgcaattcaaatccatgtcagggaaccacctggagacatattggtcttcctcacgggtcaagaagatatagaaacagcaagcgaaacattaaattacaggacaagtggtctcgggagaaagatatcagagctgattatctgtcccatatatgcaaacctgcctactgagcagcaagcaaaaatttttgagcccacacctgaaggggctagaaaggttgtccttgccacaaacatagctgaaacttctctgactattgatgggatcaaatatgtcatcgactgtggctattgcaagatgatgtcctataatccaaggactgggatggagtcattgcaagtcactcccatctcaaaggcatcagcaaggcagagggcaggtcgatctggtcgaacaggccctggtaagtgttttcggttatatactgttgacagttatattcatgaattagatgataccacaatacctgaaatactaagggctaacctggcaaatgttgttcttaggcttaagagccttggtatccatgacttgatacattttgattttatggatcctccaccatcggaagcattactaaaagccctcgaactgttatttgctttatctgcattgaataaaatgggagagttgactaaagttggtaggcggatggcagagtttccacttgatccaatgctatctaagatggtagttgcttctgacaggtacaattgctcaaacgagatcatttctattgctgccatgctttctgtcggtaattcaatcttttatcgtccaaaggacaaacaagtctatgctgacaatgcaagacggacttttcacactggggacacaggagatcatattgccttgcttaatgtttacaatacatggaccgaaacaaactactcaagtcaatggtgttatgaaaactatataaatgctaggagcatgaaaagagcaagagatatcagggatcaacttaagagactcttggagagggtcgagatcgagctaacctcaaatcttgacgatttagagtctataaagaaggccattacatcaggtttcttccctcattgtgcaaggctgcgaaagaatggatcttataaaatagtcaaacatcaacaggctgcctccatacaccccagctcaggcttgtcacaggagtttccgacatgggttttataccatgaactggtgcttacatccaaggaatacatgagacaggtaacagagttgaagcccgagtggttgctggaaatagctccacattattaccaactagaggatgtcgatgctgctttgaccttcaagaaaacgtctagtggcaatgtagtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031047 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

1050

Amino Acids

119.35

Weight (kDa)

6.13

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca	FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica	MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica	Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis	pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis	RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata	RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora	Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa	Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha	Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana	Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2919
AasI	GACNNNNNNGTC	4 cut(s)	31, 140, 1871, 2618
Acc36I	ACCTGC	2 cut(s)	1995, 2195
AccB7I	CCANNNNNTGG	2 cut(s)	2147, 3007
AccII	CGCG	1 cut(s)	906
AciI	CCGC	5 cut(s)	283, 463, 906, 1762, 2476
AclI	AACGTT	1 cut(s)	748
AclWI	GGATC	7 cut(s)	1321, 2099, 2375, 2388, 2492, 2793, 2920
AcsI	RAATTY	5 cut(s)	146, 1037, 1136, 1547, 2010
AcuI	CTGAAG	3 cut(s)	41, 798, 2049
AfaI	GTAC	2 cut(s)	872, 2537
AfeI	AGCGCT	1 cut(s)	947
AfiI	CCNNNNNNNGG	5 cut(s)	1849, 2147, 2963, 3007, 3097
AflII	CTTAAG	3 cut(s)	607, 2336, 2792
AflIII	ACRYGT	1 cut(s)	451
AhdI	GACNNNNNGTC	1 cut(s)	1935
AjiI	CACGTC	1 cut(s)	1497
AjnI	CCWGG	7 cut(s)	117, 1215, 1424, 1753, 1858, 2227, 2313
AjuI	GAANNNNNNNTTGG	4 cut(s)	389, 421, 800, 832
Alw21I	GWGCWC	1 cut(s)	1388
Alw26I	GTCTC	4 cut(s)	1857, 1943, 2791, 3028
Alw44I	GTGCAC	1 cut(s)	1384
AlwI	GGATC	7 cut(s)	1321, 2099, 2375, 2388, 2492, 2793, 2920
AlwNI	CAGNNNCTG	2 cut(s)	1802, 2228
Ama87I	CYCGRG	3 cut(s)	1687, 1940, 3056
Aor51HI	AGCGCT	1 cut(s)	947
AoxI	GGCC	3 cut(s)	1599, 2224, 2862
ApaLI	GTGCAC	1 cut(s)	1384
ApoI	RAATTY	5 cut(s)	146, 1037, 1136, 1547, 2010
Asp700I	GAANNNNTTC	3 cut(s)	389, 673, 1211
AspLEI	GCGC	2 cut(s)	906, 948
AspS9I	GGNCC	4 cut(s)	285, 1600, 2225, 2703
AsuC2I	CCSGG	2 cut(s)	791, 1668
AsuHPI	GGTGA	5 cut(s)	224, 280, 329, 662, 1132
AsuII	TTCGAA	1 cut(s)	637
AvaI	CYCGRG	3 cut(s)	1687, 1940, 3056
AvaII	GGWCC	2 cut(s)	285, 2703
BaeGI	GKGCMC	2 cut(s)	1388, 1738
BamHI	GGATCC	1 cut(s)	2380
BanII	GRGCYC	1 cut(s)	2022
BbsI	GAAGAC	3 cut(s)	29, 1098, 1867
Bbv12I	GWGCWC	1 cut(s)	1388
BceAI	ACGGC	1 cut(s)	1412
BciT130I	CCWGG	7 cut(s)	119, 1217, 1426, 1755, 1860, 2229, 2315
BciVI	GTATCC	2 cut(s)	53, 2360
BclI	TGATCA	2 cut(s)	484, 526
BcnI	CCSGG	2 cut(s)	791, 1668
BcoDI	GTCTC	4 cut(s)	1857, 1943, 2791, 3028
BfaI	CTAG	5 cut(s)	845, 2037, 2754, 3095, 3135
BfmI	CTRYAG	3 cut(s)	186, 1166, 1576
BfoI	RGCGCY	1 cut(s)	949
BfrI	CTTAAG	3 cut(s)	607, 2336, 2792
BfuAI	ACCTGC	2 cut(s)	1995, 2195
BfuI	GTATCC	2 cut(s)	53, 2360
BglII	AGATCT	1 cut(s)	1564
Bme1390I	CCNGG	9 cut(s)	119, 791, 1217, 1426, 1668, 1755, 1860, 2229, 2315
Bme18I	GGWCC	2 cut(s)	285, 2703
BmeRI	GACNNNNNGTC	1 cut(s)	1935
BmeT110I	CYCGRG	3 cut(s)	1687, 1940, 3056
BmgBI	CACGTC	1 cut(s)	1497
BmgT120I	GGNCC	4 cut(s)	285, 1600, 2225, 2703
BmiI	GGNNCC	2 cut(s)	1854, 2382
BmrFI	CCNGG	9 cut(s)	119, 791, 1217, 1426, 1668, 1755, 1860, 2229, 2315
BmrI	ACTGGG	3 cut(s)	1333, 2157, 2664
BmsI	GCATC	8 cut(s)	267, 310, 867, 874, 1693, 1804, 2195, 3097
BmuI	ACTGGG	3 cut(s)	1333, 2157, 2664
BpiI	GAAGAC	3 cut(s)	29, 1098, 1867
BplI	GAGNNNNNCTC	2 cut(s)	2813, 2845
BpmI	CTGGAG	1 cut(s)	1881
Bpu10I	CCTNAGC	1 cut(s)	2962
Bpu14I	TTCGAA	1 cut(s)	637
BpuEI	CTTGAG	3 cut(s)	1205, 1419, 2704
BpuMI	CCSGG	2 cut(s)	791, 1668
BsaI	GGTCTC	1 cut(s)	1943
BsaJI	CCNNGG	8 cut(s)	117, 1394, 1425, 1754, 2141, 2227, 2344, 3021
BsaWI	WCCGGW	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	5 cut(s)	1849, 2147, 2963, 3007, 3097
Bse118I	RCCGGY	1 cut(s)	265
Bse1I	ACTGG	6 cut(s)	645, 1315, 1339, 2152, 2659, 3012
Bse3DI	GCAATG	5 cut(s)	50, 239, 267, 2159, 3148
BseBI	CCWGG	7 cut(s)	119, 1217, 1426, 1755, 1860, 2229, 2315
BseDI	CCNNGG	8 cut(s)	117, 1394, 1425, 1754, 2141, 2227, 2344, 3021
BseLI	CCNNNNNNNGG	5 cut(s)	1849, 2147, 2963, 3007, 3097
BseMI	GCAATG	5 cut(s)	50, 239, 267, 2159, 3148
BseMII	CTCAG	3 cut(s)	858, 1986, 2976
BseNI	ACTGG	6 cut(s)	645, 1315, 1339, 2152, 2659, 3012
BseRI	GAGGAG	3 cut(s)	641, 914, 1235
BseSI	GKGCMC	2 cut(s)	1388, 1738
BseYI	CCCAGC	1 cut(s)	2957
Bsh1236I	CGCG	1 cut(s)	906
BshFI	GGCC	3 cut(s)	1601, 2226, 2864
BsiHKAI	GWGCWC	1 cut(s)	1388
BsiHKCI	CYCGRG	3 cut(s)	1687, 1940, 3056
BsiSI	CCGG	4 cut(s)	71, 266, 790, 1668
BslFI	GGGAC	3 cut(s)	584, 1956, 2672
BslI	CCNNNNNNNGG	5 cut(s)	1849, 2147, 2963, 3007, 3097
BsmAI	GTCTC	4 cut(s)	1857, 1943, 2791, 3028
BsmFI	GGGAC	3 cut(s)	584, 1956, 2672
BsnI	GGCC	3 cut(s)	1601, 2226, 2864
Bso31I	GGTCTC	1 cut(s)	1943
BsoBI	CYCGRG	3 cut(s)	1687, 1940, 3056
Bsp119I	TTCGAA	1 cut(s)	637
Bsp1286I	GDGCHC	3 cut(s)	1388, 1738, 2022
BspACI	CCGC	5 cut(s)	283, 463, 906, 1762, 2476
BspANI	GGCC	3 cut(s)	1601, 2226, 2864
BspCNI	CTCAG	3 cut(s)	859, 1987, 2975
BspFNI	CGCG	1 cut(s)	906
BspHI	TCATGA	3 cut(s)	487, 1252, 2269
BspLI	GGNNCC	2 cut(s)	1854, 2382
BspMAI	CTGCAG	2 cut(s)	190, 1170
BspMI	ACCTGC	2 cut(s)	1995, 2195
BspPI	GGATC	7 cut(s)	1321, 2099, 2375, 2388, 2492, 2793, 2920
BspQI	GCTCTTC	1 cut(s)	664
BspT104I	TTCGAA	1 cut(s)	637
BspTI	CTTAAG	3 cut(s)	607, 2336, 2792
BspTNI	GGTCTC	1 cut(s)	1943
BsrDI	GCAATG	5 cut(s)	50, 239, 267, 2159, 3148
BsrFI	RCCGGY	1 cut(s)	265
BsrI	ACTGG	6 cut(s)	645, 1315, 1339, 2152, 2659, 3012
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	8 cut(s)	117, 1394, 1425, 1754, 2141, 2227, 2344, 3021
BssT1I	CCWWGG	3 cut(s)	2141, 2344, 3021
Bst2UI	CCWGG	7 cut(s)	119, 1217, 1426, 1755, 1860, 2229, 2315
Bst4CI	ACNGT	7 cut(s)	370, 962, 1510, 2111, 2254, 2261, 2421
Bst6I	CTCTTC	6 cut(s)	392, 507, 560, 618, 664, 917
BstAFI	CTTAAG	3 cut(s)	607, 2336, 2792
BstAPI	GCANNNNNTGC	2 cut(s)	185, 1826
BstBI	TTCGAA	1 cut(s)	637
BstC8I	GCNNGC	3 cut(s)	1573, 1909, 2004
BstDEI	CTNAG	7 cut(s)	867, 1810, 1995, 2303, 2330, 2511, 2962
BstDSI	CCRYGG	1 cut(s)	1394
BstFNI	CGCG	1 cut(s)	906
BstH2I	RGCGCY	1 cut(s)	949
BstHHI	GCGC	2 cut(s)	906, 948
BstMAI	GTCTC	4 cut(s)	1857, 1943, 2791, 3028
BstMWI	GCNNNNNNNGC	9 cut(s)	185, 469, 1799, 1823, 1826, 1996, 2315, 2435, 2633
BstNI	CCWGG	7 cut(s)	119, 1217, 1426, 1755, 1860, 2229, 2315
BstSCI	CCNGG	9 cut(s)	117, 789, 1215, 1424, 1666, 1753, 1858, 2227, 2313
BstSFI	CTRYAG	3 cut(s)	186, 1166, 1576
BstSLI	GKGCMC	2 cut(s)	1388, 1738
BstUI	CGCG	1 cut(s)	906
BstV2I	GAAGAC	3 cut(s)	29, 1098, 1867
BstX2I	RGATCY	4 cut(s)	1313, 1564, 2380, 2912
BstYI	RGATCY	4 cut(s)	1313, 1564, 2380, 2912
BsuI	GTATCC	2 cut(s)	53, 2360
BsuRI	GGCC	3 cut(s)	1601, 2226, 2864
BtgI	CCRYGG	1 cut(s)	1394
BtrI	CACGTC	1 cut(s)	1497
BtsIMutI	CAGTG	5 cut(s)	375, 652, 774, 864, 2652
BveI	ACCTGC	2 cut(s)	1995, 2195
Cac8I	GCNNGC	3 cut(s)	1573, 1909, 2004
CaiI	CAGNNNCTG	2 cut(s)	1802, 2228
CciI	TCATGA	3 cut(s)	487, 1252, 2269
CfoI	GCGC	2 cut(s)	906, 948
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	4 cut(s)	285, 1600, 2225, 2703
CseI	GACGC	2 cut(s)	147, 581
Csp6I	GTAC	2 cut(s)	871, 2536
CviQI	GTAC	2 cut(s)	871, 2536
DdeI	CTNAG	7 cut(s)	867, 1810, 1995, 2303, 2330, 2511, 2962
DrdI	GACNNNNNNGTC	4 cut(s)	31, 140, 1871, 2618
DriI	GACNNNNNGTC	1 cut(s)	1935
DseDI	GACNNNNNNGTC	4 cut(s)	31, 140, 1871, 2618
Eam1104I	CTCTTC	6 cut(s)	392, 507, 560, 618, 664, 917
Eam1105I	GACNNNNNGTC	1 cut(s)	1935
EarI	CTCTTC	6 cut(s)	392, 507, 560, 618, 664, 917
EciI	GGCGGA	2 cut(s)	478, 2491
Eco130I	CCWWGG	3 cut(s)	2141, 2344, 3021
Eco24I	GRGCYC	1 cut(s)	2022
Eco31I	GGTCTC	1 cut(s)	1943
Eco32I	GATATC	3 cut(s)	193, 1953, 2779
Eco47I	GGWCC	2 cut(s)	285, 2703
Eco47III	AGCGCT	1 cut(s)	947
Eco57I	CTGAAG	3 cut(s)	41, 798, 2049
Eco88I	CYCGRG	3 cut(s)	1687, 1940, 3056
EcoO109I	RGGNCCY	1 cut(s)	2225
EcoRII	CCWGG	7 cut(s)	117, 1215, 1424, 1753, 1858, 2227, 2313
EcoRV	GATATC	3 cut(s)	193, 1953, 2779
EcoT14I	CCWWGG	3 cut(s)	2141, 2344, 3021
EcoT38I	GRGCYC	1 cut(s)	2022
ErhI	CCWWGG	3 cut(s)	2141, 2344, 3021
FalI	AAGNNNNNCTT	6 cut(s)	658, 690, 2629, 2661, 2786, 2818
FaqI	GGGAC	3 cut(s)	584, 1956, 2672
FbaI	TGATCA	2 cut(s)	484, 526
FriOI	GRGCYC	1 cut(s)	2022
FspBI	CTAG	5 cut(s)	845, 2037, 2754, 3095, 3135
GlaI	GCGC	2 cut(s)	905, 947
GsaI	CCCAGC	1 cut(s)	2961
GsuI	CTGGAG	1 cut(s)	1881
HaeII	RGCGCY	1 cut(s)	949
HaeIII	GGCC	3 cut(s)	1601, 2226, 2864
HapII	CCGG	4 cut(s)	71, 266, 790, 1668
HgaI	GACGC	2 cut(s)	147, 581
HhaI	GCGC	2 cut(s)	906, 948
Hin6I	GCGC	2 cut(s)	904, 946
HinP1I	GCGC	2 cut(s)	904, 946
HincII	GTYRAC	2 cut(s)	2257, 2460
HindII	GTYRAC	2 cut(s)	2257, 2460
HindIII	AAGCTT	2 cut(s)	137, 1451
HinfI	GANTC	8 cut(s)	302, 390, 503, 1187, 1333, 2156, 2799, 2849
HpaII	CCGG	4 cut(s)	71, 266, 790, 1668
HphI	GGTGA	5 cut(s)	224, 280, 329, 662, 1132
Hpy166II	GTNNAC	6 cut(s)	133, 1173, 1386, 2257, 2460, 2692
Hpy8I	GTNNAC	6 cut(s)	133, 1173, 1386, 2257, 2460, 2692
HpyAV	CCTTC	5 cut(s)	653, 755, 2024, 2854, 3130
HpyCH4III	ACNGT	7 cut(s)	370, 962, 1510, 2111, 2254, 2261, 2421
HpyCH4IV	ACGT	4 cut(s)	451, 748, 1496, 3131
HpyF10VI	GCNNNNNNNGC	9 cut(s)	185, 469, 1799, 1823, 1826, 1996, 2315, 2435, 2633
HpyF3I	CTNAG	7 cut(s)	867, 1810, 1995, 2303, 2330, 2511, 2962
HpySE526I	ACGT	4 cut(s)	451, 748, 1496, 3131
HspAI	GCGC	2 cut(s)	904, 946
Ksp22I	TGATCA	2 cut(s)	484, 526
LguI	GCTCTTC	1 cut(s)	664
LmnI	GCTCC	5 cut(s)	550, 820, 901, 2757, 3082
LweI	GCATC	8 cut(s)	267, 310, 867, 874, 1693, 1804, 2195, 3097
MaeI	CTAG	5 cut(s)	845, 2037, 2754, 3095, 3135
MaeII	ACGT	4 cut(s)	451, 748, 1496, 3131
MaeIII	GTNAC	8 cut(s)	364, 749, 800, 862, 910, 2167, 2970, 3040
MfeI	CAATTG	2 cut(s)	1821, 2539
MflI	RGATCY	4 cut(s)	1313, 1564, 2380, 2912
MhlI	GDGCHC	3 cut(s)	1388, 1738, 2022
MlyI	GAGTC	5 cut(s)	512, 1196, 2165, 2793, 2858
MmeI	TCCRAC	2 cut(s)	279, 3008
MroXI	GAANNNNTTC	3 cut(s)	389, 673, 1211
MslI	CAYNNNNRTG	1 cut(s)	492
MspA1I	CMGCKG	1 cut(s)	283
MspCI	CTTAAG	3 cut(s)	607, 2336, 2792
MspI	CCGG	4 cut(s)	71, 266, 790, 1668
MspR9I	CCNGG	9 cut(s)	119, 791, 1217, 1426, 1668, 1755, 1860, 2229, 2315
MunI	CAATTG	2 cut(s)	1821, 2539
MvaI	CCWGG	7 cut(s)	119, 1217, 1426, 1755, 1860, 2229, 2315
MvnI	CGCG	1 cut(s)	906
MwoI	GCNNNNNNNGC	9 cut(s)	185, 469, 1799, 1823, 1826, 1996, 2315, 2435, 2633
NciI	CCSGG	2 cut(s)	791, 1668
NlaIV	GGNNCC	2 cut(s)	1854, 2382
NmuCI	GTSAC	3 cut(s)	862, 2167, 2970
NspV	TTCGAA	1 cut(s)	637
PaeR7I	CTCGAG	1 cut(s)	1687
PagI	TCATGA	3 cut(s)	487, 1252, 2269
PciSI	GCTCTTC	1 cut(s)	664
PcsI	WCGNNNNNNNCGW	1 cut(s)	2215
PdmI	GAANNNNTTC	3 cut(s)	389, 673, 1211
PfeI	GAWTC	3 cut(s)	302, 390, 1333
PflMI	CCANNNNNTGG	2 cut(s)	2147, 3007
PfoI	TCCNGGA	1 cut(s)	1215
PleI	GAGTC	5 cut(s)	511, 1195, 2164, 2793, 2857
PpsI	GAGTC	5 cut(s)	511, 1195, 2164, 2793, 2857
PsiI	TTATAA	1 cut(s)	2919
Psp1406I	AACGTT	1 cut(s)	748
Psp6I	CCWGG	7 cut(s)	117, 1215, 1424, 1753, 1858, 2227, 2313
PspFI	CCCAGC	1 cut(s)	2957
PspGI	CCWGG	7 cut(s)	117, 1215, 1424, 1753, 1858, 2227, 2313
PspN4I	GGNNCC	2 cut(s)	1854, 2382
PspPI	GGNCC	4 cut(s)	285, 1600, 2225, 2703
PsrI	GAACNNNNNNTAC	2 cut(s)	1603, 1635
PstI	CTGCAG	2 cut(s)	190, 1170
PstNI	CAGNNNCTG	2 cut(s)	1802, 2228
PsuI	RGATCY	4 cut(s)	1313, 1564, 2380, 2912
RsaI	GTAC	2 cut(s)	872, 2537
RsaNI	GTAC	2 cut(s)	871, 2536
RseI	CAYNNNNRTG	1 cut(s)	492
SapI	GCTCTTC	1 cut(s)	664
Sau96I	GGNCC	4 cut(s)	285, 1600, 2225, 2703
SchI	GAGTC	5 cut(s)	512, 1196, 2165, 2793, 2858
ScrFI	CCNGG	9 cut(s)	119, 791, 1217, 1426, 1668, 1755, 1860, 2229, 2315
SduI	GDGCHC	3 cut(s)	1388, 1738, 2022
SfaNI	GCATC	8 cut(s)	267, 310, 867, 874, 1693, 1804, 2195, 3097
SfcI	CTRYAG	3 cut(s)	186, 1166, 1576
Sfr274I	CTCGAG	1 cut(s)	1687
SfuI	TTCGAA	1 cut(s)	637
SinI	GGWCC	2 cut(s)	285, 2703
SlaI	CTCGAG	1 cut(s)	1687
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	7 cut(s)	607, 1184, 1434, 1687, 2336, 2719, 2792
SmoI	CTYRAG	7 cut(s)	607, 1184, 1434, 1687, 2336, 2719, 2792
SsiI	CCGC	5 cut(s)	283, 463, 906, 1762, 2476
SspI	AATATT	1 cut(s)	816
SspMI	CTAG	5 cut(s)	845, 2037, 2754, 3095, 3135
StyD4I	CCNGG	9 cut(s)	117, 789, 1215, 1424, 1666, 1753, 1858, 2227, 2313
StyI	CCWWGG	3 cut(s)	2141, 2344, 3021
TaaI	ACNGT	7 cut(s)	370, 962, 1510, 2111, 2254, 2261, 2421
TaiI	ACGT	4 cut(s)	454, 751, 1499, 3134
TaqII	GACCGA	1 cut(s)	2720
TatI	WGTACW	1 cut(s)	870
TfiI	GAWTC	3 cut(s)	302, 390, 1333
TscAI	CASTG	5 cut(s)	375, 652, 781, 871, 2659
TseFI	GTSAC	3 cut(s)	862, 2167, 2970
Tsp45I	GTSAC	3 cut(s)	862, 2167, 2970
TspGWI	ACGGA	1 cut(s)	2656
TspRI	CASTG	5 cut(s)	375, 652, 781, 871, 2659
Van91I	CCANNNNNTGG	2 cut(s)	2147, 3007
Vha464I	CTTAAG	3 cut(s)	607, 2336, 2792
VneI	GTGCAC	1 cut(s)	1384
VpaK11BI	GGWCC	2 cut(s)	285, 2703
XapI	RAATTY	5 cut(s)	146, 1037, 1136, 1547, 2010
XbaI	TCTAGA	1 cut(s)	844
XhoI	CTCGAG	1 cut(s)	1687
XmnI	GAANNNNTTC	3 cut(s)	389, 673, 1211
XspI	CTAG	5 cut(s)	845, 2037, 2754, 3095, 3135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.