Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000463

Physical Location & Seq

Genomic Coordinates Forward (+)

6126101 .. 6129456

Gene Structure 3356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG074700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGGGTGTGAGAGCAACCTGAAGACATGGGTGTCTGATAAGTTAATAGCATTGCTCGGATACTCTAATCCGGTAGTTGTTCAGTATGTTATTGGATTAACTAAAAAAGCAAACTCCCTGGCTGGTTTGGTGGACAAGCTTGTCGAATTTGGATTTGCGTCATCGACTGAAACAGGGGCATTTGCTGCAGATATCTTTGCAAGAGTGTGTGGTGAAACATCTGGTTTGAAGCAATGTGGGAAACAAGAGAGTGGAGGTGCAATGCCGGTGAGGATGATGCAGCGGACCTATGTTCTGTTGGATTCAGATGATGATGGTGATGCGGAGAGATGTTCTGTTGAGGTTGTTTCTCATTCTGTGTCTGTAACAGTGGATTTCAATAAGAAAAGATTCAGGAAGAGGGCATTGGGTCAGAGAGATGGAGATGATGATGATGAGATTTTACACGGTGTGAAAGAGTATGAAGAAGAGAAGGCAATGTCTTTGGTCCAAAGCTCCAGGATCTTGCCCTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016020 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031047 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

172

Amino Acids

18.75

Weight (kDa)

5.12

Isoelectric Point (pI)

33.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca	FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica	MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica	Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis	pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis	RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata	RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora	Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii	Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa	Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha	Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana	Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	31, 140
AciI	CCGC	2 cut(s)	283, 323
AclWI	GGATC	1 cut(s)	509
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	41
AdeI	CACNNNGTG	1 cut(s)	451
AgsI	TTSAA	2 cut(s)	229, 379
AjnI	CCWGG	2 cut(s)	117, 497
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	2 cut(s)	139, 495
AluI	AGCT	2 cut(s)	139, 495
AlwI	GGATC	1 cut(s)	509
ApeKI	GCWGC	2 cut(s)	185, 280
ApoI	RAATTY	1 cut(s)	146
Asp700I	GAANNNNTTC	1 cut(s)	389
AspS9I	GGNCC	2 cut(s)	285, 487
AsuHPI	GGTGA	3 cut(s)	224, 280, 329
AvaII	GGWCC	2 cut(s)	285, 487
BbsI	GAAGAC	1 cut(s)	29
BbvI	GCAGC	2 cut(s)	172, 292
BccI	CCATC	2 cut(s)	308, 413
BciT130I	CCWGG	2 cut(s)	119, 499
BciVI	GTATCC	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	53
BisI	GCNGC	2 cut(s)	186, 281
BlsI	GCNGC	2 cut(s)	187, 282
Bme1390I	CCNGG	2 cut(s)	119, 499
Bme18I	GGWCC	2 cut(s)	285, 487
BmgT120I	GGNCC	2 cut(s)	285, 487
BmrFI	CCNGG	2 cut(s)	119, 499
BmsI	GCATC	2 cut(s)	267, 310
BpiI	GAAGAC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	481
BsaJI	CCNNGG	1 cut(s)	117
BsaWI	WCCGGW	1 cut(s)	70
Bse118I	RCCGGY	1 cut(s)	265
Bse3DI	GCAATG	4 cut(s)	50, 239, 267, 483
BseBI	CCWGG	2 cut(s)	119, 499
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	279
BseMI	GCAATG	4 cut(s)	50, 239, 267, 483
BseXI	GCAGC	2 cut(s)	172, 292
BsiSI	CCGG	2 cut(s)	71, 266
Bsp143I	GATC	1 cut(s)	501
BspACI	CCGC	2 cut(s)	283, 323
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	1 cut(s)	509
BsrDI	GCAATG	4 cut(s)	50, 239, 267, 483
BsrFI	RCCGGY	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	1 cut(s)	501
Bst2UI	CCWGG	2 cut(s)	119, 499
Bst4CI	ACNGT	2 cut(s)	370, 449
Bst6I	CTCTTC	2 cut(s)	392, 462
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstF5I	GGATG	1 cut(s)	279
BstKTI	GATC	1 cut(s)	504
BstMBI	GATC	1 cut(s)	501
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	2 cut(s)	119, 499
BstSCI	CCNGG	2 cut(s)	117, 497
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	172, 292
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	1 cut(s)	501
BstYI	RGATCY	1 cut(s)	501
BsuI	GTATCC	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	375
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	2 cut(s)	285, 487
CseI	GACGC	1 cut(s)	147
CviAII	CATG	1 cut(s)	27
CviJI	RGCY	3 cut(s)	122, 139, 495
CviKI_1	RGCY	3 cut(s)	122, 139, 495
DpnI	GATC	1 cut(s)	503
DpnII	GATC	1 cut(s)	501
DraIII	CACNNNGTG	1 cut(s)	451
DrdI	GACNNNNNNGTC	2 cut(s)	31, 140
DseDI	GACNNNNNNGTC	2 cut(s)	31, 140
Eam1104I	CTCTTC	2 cut(s)	392, 462
EarI	CTCTTC	2 cut(s)	392, 462
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	285, 487
Eco57I	CTGAAG	1 cut(s)	41
EcoRII	CCWGG	2 cut(s)	117, 497
EcoRV	GATATC	1 cut(s)	193
FaeI	CATG	1 cut(s)	30
FaiI	YATR	4 cut(s)	28, 87, 291, 462
FatI	CATG	1 cut(s)	26
Fnu4HI	GCNGC	2 cut(s)	186, 281
FokI	GGATG	1 cut(s)	286
Fsp4HI	GCNGC	2 cut(s)	186, 281
GluI	GCNGC	2 cut(s)	186, 281
GsuI	CTGGAG	1 cut(s)	481
HapII	CCGG	2 cut(s)	71, 266
HgaI	GACGC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	30
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	2 cut(s)	302, 390
HpaII	CCGG	2 cut(s)	71, 266
HphI	GGTGA	3 cut(s)	224, 280, 329
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	4 cut(s)	37, 59, 307, 414
Hpy188III	TCNNGA	1 cut(s)	394
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	466
HpyCH4III	ACNGT	2 cut(s)	370, 449
HpyCH4V	TGCA	4 cut(s)	188, 200, 260, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
Hsp92II	CATG	1 cut(s)	30
Kzo9I	GATC	1 cut(s)	501
LmnI	GCTCC	1 cut(s)	500
Lsp1109I	GCAGC	2 cut(s)	172, 292
LweI	GCATC	2 cut(s)	267, 310
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	1 cut(s)	503
MboI	GATC	1 cut(s)	501
MboII	GAAGA	4 cut(s)	34, 409, 476, 479
MflI	RGATCY	1 cut(s)	501
MluCI	AATT	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	4 cut(s)	248, 264, 334, 393
MroXI	GAANNNNTTC	1 cut(s)	389
MseI	TTAA	2 cut(s)	44, 98
MspA1I	CMGCKG	1 cut(s)	283
MspI	CCGG	2 cut(s)	71, 266
MspR9I	CCNGG	2 cut(s)	119, 499
MvaI	CCWGG	2 cut(s)	119, 499
MwoI	GCNNNNNNNGC	1 cut(s)	185
NdeII	GATC	1 cut(s)	501
NlaIII	CATG	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	2 cut(s)	302, 390
PfoI	TCCNGGA	1 cut(s)	497
PkrI	GCNGC	2 cut(s)	187, 282
Psp6I	CCWGG	2 cut(s)	117, 497
PspGI	CCWGG	2 cut(s)	117, 497
PspPI	GGNCC	2 cut(s)	285, 487
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	44, 98
SatI	GCNGC	2 cut(s)	186, 281
Sau3AI	GATC	1 cut(s)	501
Sau96I	GGNCC	2 cut(s)	285, 487
ScrFI	CCNGG	2 cut(s)	119, 499
SetI	ASST	6 cut(s)	21, 141, 259, 290, 345, 497
SfaNI	GCATC	2 cut(s)	267, 310
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	2 cut(s)	285, 487
Sse9I	AATT	1 cut(s)	146
SsiI	CCGC	2 cut(s)	283, 323
StyD4I	CCNGG	2 cut(s)	117, 497
TaaI	ACNGT	2 cut(s)	370, 449
TaqI	TCGA	2 cut(s)	144, 164
TasI	AATT	1 cut(s)	146
TfiI	GAWTC	2 cut(s)	302, 390
Tru1I	TTAA	2 cut(s)	44, 98
Tru9I	TTAA	2 cut(s)	44, 98
TscAI	CASTG	1 cut(s)	375
TseI	GCWGC	2 cut(s)	185, 280
TspDTI	ATGAA	1 cut(s)	477
TspRI	CASTG	1 cut(s)	375
VpaK11BI	GGWCC	2 cut(s)	285, 487
XapI	RAATTY	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.