Pre-mRNA-splicing factor ATP-dependent RNA helicase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| AAA_22 | PF13401 | 103 - 237 | 3.5e-06 | AAA domain |
| WHD_HA2 | PF04408 | 487 - 512 | 1.2e-08 | Helicase associated domain (HA2), winged-helix |
| HA2_C | PF21010 | 513 - 576 | 3.5e-09 | Helicase associated domain (HA2), ratchet-like |
| OB_NTP_bind | PF07717 | 634 - 712 | 1.8e-12 | Oligonucleotide/oligosaccharide-binding (OB)-fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1740 |
| AccB1I | GGYRCC | 1 cut(s) | 1776 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2056 |
| AccBSI | CCGCTC | 1 cut(s) | 1843 |
| AccI | GTMKAC | 1 cut(s) | 624 |
| AccIII | TCCGGA | 1 cut(s) | 1651 |
| AciI | CCGC | 5 cut(s) | 215, 1427, 1620, 1843, 1979 |
| AclWI | GGATC | 1 cut(s) | 1196 |
| AcoI | YGGCCR | 1 cut(s) | 1139 |
| AcsI | RAATTY | 4 cut(s) | 85, 789, 924, 2101 |
| AcuI | CTGAAG | 2 cut(s) | 1455, 1551 |
| AcvI | CACGTG | 1 cut(s) | 829 |
| AdeI | CACNNNGTG | 1 cut(s) | 1475 |
| AfaI | GTAC | 2 cut(s) | 913, 1341 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1263, 2056 |
| AflIII | ACRYGT | 1 cut(s) | 1403 |
| AgeI | ACCGGT | 1 cut(s) | 139 |
| AgsI | TTSAA | 5 cut(s) | 518, 676, 923, 1064, 1245 |
| AhlI | ACTAGT | 1 cut(s) | 661 |
| AjnI | CCWGG | 2 cut(s) | 437, 816 |
| Alw21I | GWGCWC | 5 cut(s) | 33, 416, 834, 1023, 1586 |
| Alw26I | GTCTC | 4 cut(s) | 21, 130, 1073, 2077 |
| Alw44I | GTGCAC | 1 cut(s) | 412 |
| AlwI | GGATC | 1 cut(s) | 1196 |
| Ama87I | CYCGRG | 1 cut(s) | 1174 |
| Aor13HI | TCCGGA | 1 cut(s) | 1651 |
| AoxI | GGCC | 2 cut(s) | 630, 1139 |
| ApaLI | GTGCAC | 1 cut(s) | 412 |
| ApeKI | GCWGC | 3 cut(s) | 449, 992, 1945 |
| ApoI | RAATTY | 4 cut(s) | 85, 789, 924, 2101 |
| AsiGI | ACCGGT | 1 cut(s) | 139 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 157 |
| AspS9I | GGNCC | 6 cut(s) | 197, 631, 1420, 1803, 1831, 2059 |
| AsuHPI | GGTGA | 5 cut(s) | 102, 154, 1505, 1523, 1637 |
| AsuII | TTCGAA | 1 cut(s) | 787 |
| AvaI | CYCGRG | 1 cut(s) | 1174 |
| AvaII | GGWCC | 5 cut(s) | 197, 1420, 1803, 1831, 2059 |
| BaeGI | GKGCMC | 1 cut(s) | 416 |
| BanI | GGYRCC | 1 cut(s) | 1776 |
| BanII | GRGCYC | 1 cut(s) | 1023 |
| BbrPI | CACGTG | 1 cut(s) | 829 |
| Bbv12I | GWGCWC | 5 cut(s) | 33, 416, 834, 1023, 1586 |
| BbvI | GCAGC | 3 cut(s) | 436, 1004, 1932 |
| BccI | CCATC | 5 cut(s) | 554, 613, 697, 1210, 1513 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 28 |
| BciT130I | CCWGG | 2 cut(s) | 439, 818 |
| BclI | TGATCA | 2 cut(s) | 1315, 1627 |
| BcoDI | GTCTC | 4 cut(s) | 21, 130, 1073, 2077 |
| BcuI | ACTAGT | 1 cut(s) | 661 |
| BfaI | CTAG | 7 cut(s) | 453, 482, 662, 693, 773, 1334, 1385 |
| BfmI | CTRYAG | 3 cut(s) | 607, 1946, 2005 |
| BisI | GCNGC | 5 cut(s) | 450, 993, 1844, 1946, 1979 |
| BlsI | GCNGC | 5 cut(s) | 451, 994, 1845, 1947, 1980 |
| Bme1390I | CCNGG | 2 cut(s) | 439, 818 |
| Bme18I | GGWCC | 5 cut(s) | 197, 1420, 1803, 1831, 2059 |
| BmeT110I | CYCGRG | 1 cut(s) | 1174 |
| BmgT120I | GGNCC | 6 cut(s) | 197, 631, 1420, 1803, 1831, 2059 |
| BmiI | GGNNCC | 4 cut(s) | 219, 1422, 1778, 1832 |
| BmrFI | CCNGG | 2 cut(s) | 439, 818 |
| BmrI | ACTGGG | 1 cut(s) | 1765 |
| BmsI | GCATC | 7 cut(s) | 14, 583, 1015, 1259, 1390, 1528, 1660 |
| BmuI | ACTGGG | 1 cut(s) | 1765 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1859, 1891 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1262 |
| Bpu14I | TTCGAA | 1 cut(s) | 787 |
| BpuEI | CTTGAG | 3 cut(s) | 447, 1715, 1859 |
| BsaAI | YACGTR | 1 cut(s) | 829 |
| BsaI | GGTCTC | 2 cut(s) | 130, 1073 |
| BsaWI | WCCGGW | 2 cut(s) | 139, 1651 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1263, 2056 |
| Bse118I | RCCGGY | 2 cut(s) | 139, 1622 |
| Bse1I | ACTGG | 3 cut(s) | 343, 1771, 1967 |
| Bse3DI | GCAATG | 3 cut(s) | 1318, 1548, 1719 |
| BseAI | TCCGGA | 1 cut(s) | 1651 |
| BseBI | CCWGG | 2 cut(s) | 439, 818 |
| BseGI | GGATG | 3 cut(s) | 1524, 1543, 1648 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1263, 2056 |
| BseMI | GCAATG | 3 cut(s) | 1318, 1548, 1719 |
| BseMII | CTCAG | 4 cut(s) | 785, 1494, 1515, 1779 |
| BseNI | ACTGG | 3 cut(s) | 343, 1771, 1967 |
| BseRI | GAGGAG | 1 cut(s) | 798 |
| BseSI | GKGCMC | 1 cut(s) | 416 |
| BseXI | GCAGC | 3 cut(s) | 436, 1004, 1932 |
| BseYI | CCCAGC | 1 cut(s) | 1151 |
| BsgI | GTGCAG | 1 cut(s) | 91 |
| BshFI | GGCC | 2 cut(s) | 632, 1141 |
| BshNI | GGYRCC | 1 cut(s) | 1776 |
| BshTI | ACCGGT | 1 cut(s) | 139 |
| BsiHKAI | GWGCWC | 5 cut(s) | 33, 416, 834, 1023, 1586 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1174 |
| BsiSI | CCGG | 4 cut(s) | 42, 140, 1623, 1652 |
| BslFI | GGGAC | 1 cut(s) | 1844 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1263, 2056 |
| BsmAI | GTCTC | 4 cut(s) | 21, 130, 1073, 2077 |
| BsmBI | CGTCTC | 1 cut(s) | 21 |
| BsmFI | GGGAC | 1 cut(s) | 1844 |
| BsmI | GAATGC | 2 cut(s) | 1692, 2031 |
| BsnI | GGCC | 2 cut(s) | 632, 1141 |
| Bso31I | GGTCTC | 2 cut(s) | 130, 1073 |
| BsoBI | CYCGRG | 1 cut(s) | 1174 |
| Bsp119I | TTCGAA | 1 cut(s) | 787 |
| Bsp1286I | GDGCHC | 5 cut(s) | 33, 416, 834, 1023, 1586 |
| Bsp13I | TCCGGA | 1 cut(s) | 1651 |
| Bsp143I | GATC | 7 cut(s) | 970, 1201, 1315, 1570, 1627, 1714, 2009 |
| BspACI | CCGC | 5 cut(s) | 215, 1427, 1620, 1843, 1979 |
| BspANI | GGCC | 2 cut(s) | 632, 1141 |
| BspCNI | CTCAG | 4 cut(s) | 786, 1495, 1516, 1778 |
| BspEI | TCCGGA | 1 cut(s) | 1651 |
| BspHI | TCATGA | 3 cut(s) | 928, 1015, 1630 |
| BspLI | GGNNCC | 4 cut(s) | 219, 1422, 1778, 1832 |
| BspMAI | CTGCAG | 1 cut(s) | 1950 |
| BspPI | GGATC | 1 cut(s) | 1196 |
| BspQI | GCTCTTC | 1 cut(s) | 1431 |
| BspT104I | TTCGAA | 1 cut(s) | 787 |
| BspT107I | GGYRCC | 1 cut(s) | 1776 |
| BspTNI | GGTCTC | 2 cut(s) | 130, 1073 |
| BsrBI | CCGCTC | 1 cut(s) | 1843 |
| BsrDI | GCAATG | 3 cut(s) | 1318, 1548, 1719 |
| BsrFI | RCCGGY | 2 cut(s) | 139, 1622 |
| BsrI | ACTGG | 3 cut(s) | 343, 1771, 1967 |
| BssAI | RCCGGY | 2 cut(s) | 139, 1622 |
| BssMI | GATC | 7 cut(s) | 970, 1201, 1315, 1570, 1627, 1714, 2009 |
| Bst2UI | CCWGG | 2 cut(s) | 439, 818 |
| Bst4CI | ACNGT | 2 cut(s) | 69, 541 |
| Bst6I | CTCTTC | 3 cut(s) | 972, 1380, 1431 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1475 |
| BstBAI | YACGTR | 1 cut(s) | 829 |
| BstBI | TTCGAA | 1 cut(s) | 787 |
| BstC8I | GCNNGC | 3 cut(s) | 191, 1053, 2019 |
| BstDEI | CTNAG | 7 cut(s) | 794, 1262, 1442, 1503, 1524, 1551, 1765 |
| BstF5I | GGATG | 3 cut(s) | 1524, 1543, 1648 |
| BstKTI | GATC | 7 cut(s) | 973, 1204, 1318, 1573, 1630, 1717, 2012 |
| BstMAI | GTCTC | 4 cut(s) | 21, 130, 1073, 2077 |
| BstMBI | GATC | 7 cut(s) | 970, 1201, 1315, 1570, 1627, 1714, 2009 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 851, 1018, 1057, 1475, 1562, 1679, 1937 |
| BstNI | CCWGG | 2 cut(s) | 439, 818 |
| BstNSI | RCATGY | 1 cut(s) | 1051 |
| BstSCI | CCNGG | 2 cut(s) | 437, 816 |
| BstSFI | CTRYAG | 3 cut(s) | 607, 1946, 2005 |
| BstSLI | GKGCMC | 1 cut(s) | 416 |
| BstV1I | GCAGC | 3 cut(s) | 436, 1004, 1932 |
| BsuRI | GGCC | 2 cut(s) | 632, 1141 |
| BtsCI | GGATG | 3 cut(s) | 1524, 1543, 1648 |
| BtsI | GCAGTG | 1 cut(s) | 1216 |
| BtsIMutI | CAGTG | 3 cut(s) | 966, 1216, 1778 |
| Cac8I | GCNNGC | 3 cut(s) | 191, 1053, 2019 |
| CciI | TCATGA | 3 cut(s) | 928, 1015, 1630 |
| Cfr10I | RCCGGY | 2 cut(s) | 139, 1622 |
| Cfr13I | GGNCC | 6 cut(s) | 197, 631, 1420, 1803, 1831, 2059 |
| CseI | GACGC | 1 cut(s) | 1763 |
| Csp6I | GTAC | 2 cut(s) | 912, 1340 |
| CspAI | ACCGGT | 1 cut(s) | 139 |
| CviQI | GTAC | 2 cut(s) | 912, 1340 |
| DdeI | CTNAG | 7 cut(s) | 794, 1262, 1442, 1503, 1524, 1551, 1765 |
| DpnI | GATC | 7 cut(s) | 972, 1203, 1317, 1572, 1629, 1716, 2011 |
| DpnII | GATC | 7 cut(s) | 970, 1201, 1315, 1570, 1627, 1714, 2009 |
| DraIII | CACNNNGTG | 1 cut(s) | 1475 |
| EaeI | YGGCCR | 1 cut(s) | 1139 |
| Eam1104I | CTCTTC | 3 cut(s) | 972, 1380, 1431 |
| EarI | CTCTTC | 3 cut(s) | 972, 1380, 1431 |
| EciI | GGCGGA | 3 cut(s) | 230, 1416, 1609 |
| Ecl136II | GAGCTC | 1 cut(s) | 1021 |
| Eco24I | GRGCYC | 1 cut(s) | 1023 |
| Eco31I | GGTCTC | 2 cut(s) | 130, 1073 |
| Eco47I | GGWCC | 5 cut(s) | 197, 1420, 1803, 1831, 2059 |
| Eco53kI | GAGCTC | 1 cut(s) | 1021 |
| Eco57I | CTGAAG | 2 cut(s) | 1455, 1551 |
| Eco72I | CACGTG | 1 cut(s) | 829 |
| Eco88I | CYCGRG | 1 cut(s) | 1174 |
| EcoICRI | GAGCTC | 1 cut(s) | 1021 |
| EcoRI | GAATTC | 1 cut(s) | 789 |
| EcoRII | CCWGG | 2 cut(s) | 437, 816 |
| EcoT22I | ATGCAT | 1 cut(s) | 1692 |
| EcoT38I | GRGCYC | 1 cut(s) | 1023 |
| Esp3I | CGTCTC | 1 cut(s) | 21 |
| FaqI | GGGAC | 1 cut(s) | 1844 |
| FbaI | TGATCA | 2 cut(s) | 1315, 1627 |
| FblI | GTMKAC | 1 cut(s) | 624 |
| Fnu4HI | GCNGC | 5 cut(s) | 450, 993, 1844, 1946, 1979 |
| FokI | GGATG | 3 cut(s) | 1531, 1550, 1635 |
| FriOI | GRGCYC | 1 cut(s) | 1023 |
| Fsp4HI | GCNGC | 5 cut(s) | 450, 993, 1844, 1946, 1979 |
| FspBI | CTAG | 7 cut(s) | 453, 482, 662, 693, 773, 1334, 1385 |
| GluI | GCNGC | 5 cut(s) | 450, 993, 1844, 1946, 1979 |
| GsaI | CCCAGC | 1 cut(s) | 1155 |
| HaeIII | GGCC | 2 cut(s) | 632, 1141 |
| HapII | CCGG | 4 cut(s) | 42, 140, 1623, 1652 |
| HgaI | GACGC | 1 cut(s) | 1763 |
| HincII | GTYRAC | 2 cut(s) | 1171, 1233 |
| HindII | GTYRAC | 2 cut(s) | 1171, 1233 |
| HindIII | AAGCTT | 1 cut(s) | 187 |
| HpaI | GTTAAC | 1 cut(s) | 1233 |
| HpaII | CCGG | 4 cut(s) | 42, 140, 1623, 1652 |
| HphI | GGTGA | 5 cut(s) | 102, 154, 1505, 1523, 1637 |
| Hpy166II | GTNNAC | 5 cut(s) | 414, 625, 1171, 1233, 1514 |
| Hpy8I | GTNNAC | 5 cut(s) | 414, 625, 1171, 1233, 1514 |
| Hpy99I | CGWCG | 2 cut(s) | 13, 16 |
| HpyAV | CCTTC | 5 cut(s) | 396, 670, 1045, 1096, 1849 |
| HpyCH4III | ACNGT | 2 cut(s) | 69, 541 |
| HpyCH4IV | ACGT | 3 cut(s) | 828, 1345, 1405 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 851, 1018, 1057, 1475, 1562, 1679, 1937 |
| HpyF3I | CTNAG | 7 cut(s) | 794, 1262, 1442, 1503, 1524, 1551, 1765 |
| HpySE526I | ACGT | 3 cut(s) | 828, 1345, 1405 |
| Kpn2I | TCCGGA | 1 cut(s) | 1651 |
| Ksp22I | TGATCA | 2 cut(s) | 1315, 1627 |
| KspAI | GTTAAC | 1 cut(s) | 1233 |
| Kzo9I | GATC | 7 cut(s) | 970, 1201, 1315, 1570, 1627, 1714, 2009 |
| LguI | GCTCTTC | 1 cut(s) | 1431 |
| LmnI | GCTCC | 2 cut(s) | 217, 2131 |
| Lsp1109I | GCAGC | 3 cut(s) | 436, 1004, 1932 |
| LweI | GCATC | 7 cut(s) | 14, 583, 1015, 1259, 1390, 1528, 1660 |
| MaeI | CTAG | 7 cut(s) | 453, 482, 662, 693, 773, 1334, 1385 |
| MaeII | ACGT | 3 cut(s) | 828, 1345, 1405 |
| MaeIII | GTNAC | 1 cut(s) | 2089 |
| MalI | GATC | 7 cut(s) | 972, 1203, 1317, 1572, 1629, 1716, 2011 |
| MbiI | CCGCTC | 1 cut(s) | 1843 |
| MboI | GATC | 7 cut(s) | 970, 1201, 1315, 1570, 1627, 1714, 2009 |
| MboII | GAAGA | 6 cut(s) | 194, 530, 989, 1367, 1448, 1918 |
| MfeI | CAATTG | 1 cut(s) | 1001 |
| MhlI | GDGCHC | 5 cut(s) | 33, 416, 834, 1023, 1586 |
| MlyI | GAGTC | 5 cut(s) | 47, 85, 1166, 1229, 1391 |
| MmeI | TCCRAC | 2 cut(s) | 646, 2037 |
| Mph1103I | ATGCAT | 1 cut(s) | 1692 |
| MroI | TCCGGA | 1 cut(s) | 1651 |
| MroXI | GAANNNNTTC | 1 cut(s) | 157 |
| MseI | TTAA | 6 cut(s) | 705, 1226, 1232, 1392, 1481, 2137 |
| MslI | CAYNNNNRTG | 1 cut(s) | 933 |
| MspI | CCGG | 4 cut(s) | 42, 140, 1623, 1652 |
| MspR9I | CCNGG | 2 cut(s) | 439, 818 |
| MunI | CAATTG | 1 cut(s) | 1001 |
| Mva1269I | GAATGC | 2 cut(s) | 1692, 2031 |
| MvaI | CCWGG | 2 cut(s) | 439, 818 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 851, 1018, 1057, 1475, 1562, 1679, 1937 |
| NdeII | GATC | 7 cut(s) | 970, 1201, 1315, 1570, 1627, 1714, 2009 |
| NlaIV | GGNNCC | 4 cut(s) | 219, 1422, 1778, 1832 |
| NmeAIII | GCCGAG | 1 cut(s) | 1081 |
| NsiI | ATGCAT | 1 cut(s) | 1692 |
| NspI | RCATGY | 1 cut(s) | 1051 |
| NspV | TTCGAA | 1 cut(s) | 787 |
| PagI | TCATGA | 3 cut(s) | 928, 1015, 1630 |
| PciSI | GCTCTTC | 1 cut(s) | 1431 |
| PctI | GAATGC | 2 cut(s) | 1692, 2031 |
| PdmI | GAANNNNTTC | 1 cut(s) | 157 |
| PfeI | GAWTC | 5 cut(s) | 53, 158, 267, 764, 1634 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2056 |
| PinAI | ACCGGT | 1 cut(s) | 139 |
| PkrI | GCNGC | 5 cut(s) | 451, 994, 1845, 1947, 1980 |
| PleI | GAGTC | 5 cut(s) | 46, 84, 1166, 1228, 1391 |
| PmaCI | CACGTG | 1 cut(s) | 829 |
| PmlI | CACGTG | 1 cut(s) | 829 |
| PpsI | GAGTC | 5 cut(s) | 46, 84, 1166, 1228, 1391 |
| Ppu21I | YACGTR | 1 cut(s) | 829 |
| PsiI | TTATAA | 1 cut(s) | 1740 |
| Psp124BI | GAGCTC | 1 cut(s) | 1023 |
| Psp6I | CCWGG | 2 cut(s) | 437, 816 |
| PspCI | CACGTG | 1 cut(s) | 829 |
| PspFI | CCCAGC | 1 cut(s) | 1151 |
| PspGI | CCWGG | 2 cut(s) | 437, 816 |
| PspN4I | GGNNCC | 4 cut(s) | 219, 1422, 1778, 1832 |
| PspPI | GGNCC | 6 cut(s) | 197, 631, 1420, 1803, 1831, 2059 |
| PstI | CTGCAG | 1 cut(s) | 1950 |
| RsaI | GTAC | 2 cut(s) | 913, 1341 |
| RsaNI | GTAC | 2 cut(s) | 912, 1340 |
| RseI | CAYNNNNRTG | 1 cut(s) | 933 |
| SacI | GAGCTC | 1 cut(s) | 1023 |
| SapI | GCTCTTC | 1 cut(s) | 1431 |
| SaqAI | TTAA | 6 cut(s) | 705, 1226, 1232, 1392, 1481, 2137 |
| SatI | GCNGC | 5 cut(s) | 450, 993, 1844, 1946, 1979 |
| Sau3AI | GATC | 7 cut(s) | 970, 1201, 1315, 1570, 1627, 1714, 2009 |
| Sau96I | GGNCC | 6 cut(s) | 197, 631, 1420, 1803, 1831, 2059 |
| SchI | GAGTC | 5 cut(s) | 47, 85, 1166, 1229, 1391 |
| ScrFI | CCNGG | 2 cut(s) | 439, 818 |
| SduI | GDGCHC | 5 cut(s) | 33, 416, 834, 1023, 1586 |
| SfaNI | GCATC | 7 cut(s) | 14, 583, 1015, 1259, 1390, 1528, 1660 |
| SfcI | CTRYAG | 3 cut(s) | 607, 1946, 2005 |
| SfuI | TTCGAA | 1 cut(s) | 787 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1622 |
| SinI | GGWCC | 5 cut(s) | 197, 1420, 1803, 1831, 2059 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 933 |
| SmlI | CTYRAG | 3 cut(s) | 462, 1730, 1838 |
| SmoI | CTYRAG | 3 cut(s) | 462, 1730, 1838 |
| SpeI | ACTAGT | 1 cut(s) | 661 |
| SsiI | CCGC | 5 cut(s) | 215, 1427, 1620, 1843, 1979 |
| SspMI | CTAG | 7 cut(s) | 453, 482, 662, 693, 773, 1334, 1385 |
| SstI | GAGCTC | 1 cut(s) | 1023 |
| StyD4I | CCNGG | 2 cut(s) | 437, 816 |
| TaaI | ACNGT | 2 cut(s) | 69, 541 |
| TaiI | ACGT | 3 cut(s) | 831, 1348, 1408 |
| TaqI | TCGA | 6 cut(s) | 79, 780, 787, 973, 1400, 2064 |
| TaqII | GACCGA | 1 cut(s) | 185 |
| TatI | WGTACW | 1 cut(s) | 1339 |
| TauI | GCSGC | 2 cut(s) | 1846, 1981 |
| TfiI | GAWTC | 5 cut(s) | 53, 158, 267, 764, 1634 |
| Tru1I | TTAA | 6 cut(s) | 705, 1226, 1232, 1392, 1481, 2137 |
| Tru9I | TTAA | 6 cut(s) | 705, 1226, 1232, 1392, 1481, 2137 |
| TscAI | CASTG | 3 cut(s) | 973, 1216, 1778 |
| TseI | GCWGC | 3 cut(s) | 449, 992, 1945 |
| TspDTI | ATGAA | 8 cut(s) | 917, 951, 1056, 1400, 1634, 1758, 1797, 1823 |
| TspGWI | ACGGA | 4 cut(s) | 1335, 1531, 1627, 2108 |
| TspRI | CASTG | 3 cut(s) | 973, 1216, 1778 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2056 |
| VneI | GTGCAC | 1 cut(s) | 412 |
| VpaK11BI | GGWCC | 5 cut(s) | 197, 1420, 1803, 1831, 2059 |
| XapI | RAATTY | 4 cut(s) | 85, 789, 924, 2101 |
| XbaI | TCTAGA | 1 cut(s) | 692 |
| XceI | RCATGY | 1 cut(s) | 1051 |
| XmiI | GTMKAC | 1 cut(s) | 624 |
| XmnI | GAANNNNTTC | 1 cut(s) | 157 |
| XspI | CTAG | 7 cut(s) | 453, 482, 662, 693, 773, 1334, 1385 |
| Zsp2I | ATGCAT | 1 cut(s) | 1692 |