AT4G16680

Pre-mRNA-splicing factor ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Reverse (-)
9387393 .. 9391726
4334 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16680.2

Sequence Viewer

Length: 1971 bp
ATGGAGACTAATGTTCCGGAGAAGAAGATCCTTGGTTTCCCGGAAGAGATGAATTCGACAATTCAGTTTTTATCTGTTGAGAAAACAACATGTCGTCTTCCTGTTTCTATAAAATTCAATATACCAAAGAAAATTTCTACAAAGAGAAGAAGAATATCTGTAGAAGAAGAAGAAGAAGAAGAAGACGAGAATAAAACGAAGTTGAGTTCTTGGGAGAAGGTTTTGAGTAGCGATGAGATTTTGAGGTTAAGGGAAGTTTCAAGACGAAAGTATTTGACGGATCGAGAGAATAAGAAGGTGGAGGAGTTAAGGGATGAGAGAAGGTATAGGTTTCCAGATGCTTATGATCAAGAAGGGTGTATTGATCAGAAGAAGAGGTTTGATGTTGCCAAGGAGAGGTATTGTGAGCGAAGAAGGAGCGGGAGAGTTGTTACGGAGCAAGAAGCTTGGGAGGATCATCAGGCTCAGAAAGCGAGAGTGAGGTTTGGTGCAAAGGATAAGAAGCAAGTTGTTGATGGGTATGAGTTTGTGTTTGATGATTTGACAGGCTTTGTTGAGGAGTCTAGCGAGGCGGAAACTGGGAAACATCGAGGTTGTTATTCGAAGACTGCTGCAGAGAAGGCTCGGGAGGGGAGGGAGTTTCTTCCGATTCATGGGTACAGGGAGGAACTGCTGAAACTTATTGAAGAGAATCAGGTTCTTGTCATTGTTGGAGAGACAGGATCGGGTAAAACTACGCAGATACCGCAGTATCTTCAAGAAGCCGGTTACACAAAGCGTGGAAAGATCGGTTGTACTCAGCCTCGGAGAGTTGCTGCAATGAGCGTTGCTTCCCGAGTGGCTCAAGAGGTTGGTGTTAAACTTGGACATGAGGTTGGATATTCCATTAGATTTGAAGACTGTACTTCAGAGAAAACAGTTATCAAGTACATGACTGATGGGATGCTGCTACGAGAGCTACTCATAGAACCGAAACTCGATAGCTATAGTGTCATCATTATTGATGAGGCGCACGAAAGAACACTGTCCACTGATATTTTGTTTGCGTTAGTGAAGGATGTAGCCAAGGTTAGGCCTGATCTGAGGTTAATAATCTCCAGTGCAACGCTTGAAGCTAAAAAGTTCTCCGAATACTTTGATTCGGCTCGGATTTACCTGATTCCAGGAAGAAGATATCCAGTTGAAAAGCTCTTCAGAAAATGTCCTGAACCTGACTACTTGGAGACAGTGATACGCACTGTGGTTCAGATACATCAGACTGAGGCGATAGGAGACATTTTAGTTTTCCTCACTGGTCAAGAAGAGATCGAAACAGTAGAAACGAATTTGAAGCGAAGGATGATGGATTTGGGTACAAAGGGATCTGAGATCATTATCTGTCCTATCTACTCAAATCTCCCAACTCCACTACAGGCAAAAGTGTTTGAACCGGCCCCTAAAGGGACACGGAAAGTTGTCTTGGCAACGAATATTGCAGAAACATCGTTAACCATTGATGGGGTTAAATACGTCATTGATCCAGGATATTGCAAGATCAACTCATACAACCCGAGAACGGGAATGGAGTCACTCCTTGTAACTCCTATTTCCAAGGCTTCCGCAGCGCAACGAGCTGGTCGGTCTGGAAGAACAGGTCCTGGGAAATGTTTCCGGTTGTACAATATCAAGGATTTAGAGCCCACTACAATACCGGAAATCCAAAGGGCTAACCTTGCAAGTGTTGTGCTTACTTTGAAGAGTCTTGGGATTCAAGATGTGTTCAATTTTGATTTCATGGATCCTCCACCTGAAAACGCTCTTTTGAAGGCTCTAGAGTTGCTCTATGCGCTGGGTGCTTTGGATGAAATTGGTGAGATTACTAAGGGAACTCGGTCTTCTATCGACCAAAGAACCAGCAAGTTTTCGCCGACAAGGCTCGGATGGATTTCTATGAAGATACAGAGAACGTCGGCGATCACATTGCATTGTTAA

Protein Analysis

656

Amino Acids

74.64

Weight (kDa)

8.27

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 143 - 293 6.1e-08 DEAD/DEAH box helicase
AAA_22 PF13401 150 - 270 8.7e-08 AAA domain
Helicase_C PF00271 332 - 465 1.1e-11 Helicase conserved C-terminal domain
WHD_HA2 PF04408 523 - 551 4.3e-11 Helicase associated domain (HA2), winged-helix
HA2_C PF21010 552 - 615 1.3e-11 Helicase associated domain (HA2), ratchet-like
OB_NTP_bind PF07717 673 - 751 2.9e-22 Oligonucleotide/oligosaccharide-binding (OB)-fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000463)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32490 AT1G32490 AT2G35340 AT2G35340 AT4G16680 AT4G16680
fragaria_vesca FvH4_1g06760 FvH4_1g06761 FvH4_1g06770 FvH4_3g40380 FvH4_3g40450 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_5g14240 FvH4_7g01330 FvH4_7g01330
malus_domestica MD02G1072400.v1.1 MD02G1072500.v1.1 MD02G1088100.v1.1 MD06G1200100.v1.1 MD07G1285300.v1.1 MD08G1042900.v1.1
prunus_persica Prupe.5G201700_v2.0.a1 Prupe.5G201700_v2.0.a1 Prupe.6G014300_v2.0.a1 Prupe.6G159800_v2.0.a1 Prupe.7G201500_v2.0.a1 Prupe.8G103900_v2.0.a1 Prupe.8G104500_v2.0.a1
pyrus_communis pycom02g05640 pycom02g05650 pycom14g17310
rosa_chinensis RchiOBHm_Chr2g0092491 RchiOBHm_Chr2g0092541 RchiOBHm_Chr5g0073091 RchiOBHm_Chr6g0263651 RchiOBHm_Chr6g0263711 RchiOBHm_Chr7g0182681
rosa_laevigata RLG00000005109 RLG00000014320 RLG00000014322 RLG00000014324 RLG00000014326 RLG00000014327 RLG00000016318 RLG00000016322 RLG00000036362
rosa_multiflora Rmu_sc0000014.1_g000045 Rmu_sc0002174.1_g000001 Rmu_sc0003570.1_g000001 Rmu_sc0004296.1_g000005 Rmu_sc0004296.1_g000014 Rmu_sc0005592.1_g000025
rosa_roxburghii Rroxscaffold_176G00431160 Rroxscaffold_176G00431170 Rroxscaffold_2G00148990 Rroxscaffold_2G00149040 Rroxscaffold_3G00271070 Rroxscaffold_6G00409880 Rroxscaffold_7G00204020 Rroxscaffold_7G00204040 Rroxscaffold_7G00204070
rosa_rugosa Rorug02G0027100 Rorug02G0027200 Rorug02G0027300 Rorug05G0421000 Rorug06G0449100
rosa_samantha Rh2AG072900 Rh2AG073200 Rh2BG073500 Rh2BG074100 Rh2CG074700 Rh2DG071600 Rh2DG072300 Rh5AG478000 Rh5BG498700 Rh5DG510800 Rh6AG125300 Rh6BG121400 Rh6CG119800 Rh7AG052900 Rh7BG052500 Rh7CG054000 Rh7DG052300
rosa_wichuraiana Rw0G005280 Rw2G005970 Rw2G006000 Rw5G044390 Rw6G010890 Rw7G004310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 420
AccIII TCCGGA 1 cut(s) 16
AciI CCGC 4 cut(s) 420, 572, 746, 1599
AclWI GGATC 8 cut(s) 22, 288, 462, 730, 1369, 1511, 1772, 1785
AcsI RAATTY 4 cut(s) 52, 113, 132, 1324
AcuI CTGAAG 2 cut(s) 891, 1177
AfaI GTAC 6 cut(s) 659, 796, 904, 929, 1354, 1658
AfiI CCNNNNNNNGG 7 cut(s) 396, 653, 1071, 1440, 1497, 1555, 1556
AflIII ACRYGT 1 cut(s) 89
AjnI CCWGG 3 cut(s) 1162, 1519, 1636
AjuI GAANNNNNNNTTGG 4 cut(s) 118, 150, 1442, 1474
AluBI AGCT 6 cut(s) 446, 958, 984, 1115, 1189, 1613
AluI AGCT 6 cut(s) 446, 958, 984, 1115, 1189, 1613
Alw26I GTCTC 3 cut(s) 710, 1217, 1266
AlwI GGATC 8 cut(s) 22, 288, 462, 730, 1369, 1511, 1772, 1785
AlwNI CAGNNNCTG 1 cut(s) 1637
Ama87I CYCGRG 3 cut(s) 624, 834, 1549
Aor13HI TCCGGA 1 cut(s) 16
AoxI GGCC 2 cut(s) 1073, 1431
ApeKI GCWGC 4 cut(s) 611, 815, 946, 1601
ApoI RAATTY 4 cut(s) 52, 113, 132, 1324
Asp700I GAANNNNTTC 1 cut(s) 1646
AspLEI GCGC 3 cut(s) 1012, 1606, 1828
AspS9I GGNCC 2 cut(s) 1432, 1634
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 1862
AsuII TTCGAA 1 cut(s) 602
AvaI CYCGRG 3 cut(s) 624, 834, 1549
AvaII GGWCC 1 cut(s) 1634
BaeI ACNNNNGTAYC 4 cut(s) 734, 734, 767, 767
BamHI GGATCC 1 cut(s) 1777
BanII GRGCYC 1 cut(s) 1680
BbsI GAAGAC 5 cut(s) 89, 189, 611, 903, 1866
BbvI GCAGC 4 cut(s) 598, 802, 933, 1613
BccI CCATC 5 cut(s) 509, 932, 1336, 1490, 1914
BcgI CGANNNNNNTGC 3 cut(s) 1464, 1498, 1942
BciT130I CCWGG 3 cut(s) 1164, 1521, 1638
BclI TGATCA 2 cut(s) 346, 364
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 3 cut(s) 710, 1217, 1266
BfaI CTAG 2 cut(s) 564, 1811
BfmI CTRYAG 4 cut(s) 159, 612, 985, 1409
BglI GCCNNNNNGGC 1 cut(s) 1912
BisI GCNGC 4 cut(s) 612, 816, 947, 1602
BlsI GCNGC 4 cut(s) 613, 817, 948, 1603
Bme1390I CCNGG 4 cut(s) 41, 1164, 1521, 1638
Bme18I GGWCC 1 cut(s) 1634
BmeT110I CYCGRG 3 cut(s) 624, 834, 1549
BmgT120I GGNCC 2 cut(s) 1432, 1634
BmiI GGNNCC 2 cut(s) 1434, 1779
BmrFI CCNGG 4 cut(s) 41, 1164, 1521, 1638
BmrI ACTGGG 1 cut(s) 588
BmsI GCATC 2 cut(s) 328, 933
BmuI ACTGGG 1 cut(s) 588
BpiI GAAGAC 5 cut(s) 89, 189, 611, 903, 1866
BplI GAGNNNNNCTC 2 cut(s) 945, 977
BpmI CTGGAG 1 cut(s) 1081
Bpu14I TTCGAA 1 cut(s) 602
BpuEI CTTGAG 1 cut(s) 828
BpuMI CCSGG 1 cut(s) 41
BsaBI GATNNNNATC 1 cut(s) 1373
BsaJI CCNNGG 6 cut(s) 31, 390, 803, 1065, 1590, 1637
BsaWI WCCGGW 3 cut(s) 16, 1650, 1690
Bsc4I CCNNNNNNNGG 7 cut(s) 396, 653, 1071, 1440, 1497, 1555, 1556
Bse118I RCCGGY 2 cut(s) 764, 1429
Bse1I ACTGG 4 cut(s) 583, 1098, 1178, 1297
Bse3DI GCAATG 2 cut(s) 825, 1958
Bse8I GATNNNNATC 1 cut(s) 1373
BseAI TCCGGA 1 cut(s) 16
BseBI CCWGG 3 cut(s) 1164, 1521, 1638
BseDI CCNNGG 6 cut(s) 31, 390, 803, 1065, 1590, 1637
BseGI GGATG 6 cut(s) 319, 948, 1063, 1344, 1846, 1925
BseJI GATNNNNATC 1 cut(s) 1373
BseLI CCNNNNNNNGG 7 cut(s) 396, 653, 1071, 1440, 1497, 1555, 1556
BseMI GCAATG 2 cut(s) 825, 1958
BseMII CTCAG 5 cut(s) 479, 812, 1073, 1251, 1356
BseNI ACTGG 4 cut(s) 583, 1098, 1178, 1297
BseRI GAGGAG 2 cut(s) 317, 572
BseXI GCAGC 4 cut(s) 598, 802, 933, 1613
BseYI CCCAGC 1 cut(s) 1828
BshFI GGCC 2 cut(s) 1075, 1433
BsiHKCI CYCGRG 3 cut(s) 624, 834, 1549
BsiSI CCGG 6 cut(s) 17, 41, 765, 1430, 1651, 1691
BslFI GGGAC 1 cut(s) 1456
BslI CCNNNNNNNGG 7 cut(s) 396, 653, 1071, 1440, 1497, 1555, 1556
BsmAI GTCTC 3 cut(s) 710, 1217, 1266
BsmFI GGGAC 1 cut(s) 1456
BsnI GGCC 2 cut(s) 1075, 1433
BsoBI CYCGRG 3 cut(s) 624, 834, 1549
Bsp119I TTCGAA 1 cut(s) 602
Bsp1286I GDGCHC 1 cut(s) 1680
Bsp13I TCCGGA 1 cut(s) 16
Bsp1407I TGTACA 1 cut(s) 1656
BspACI CCGC 4 cut(s) 420, 572, 746, 1599
BspANI GGCC 2 cut(s) 1075, 1433
BspCNI CTCAG 5 cut(s) 478, 811, 1074, 1252, 1357
BspEI TCCGGA 1 cut(s) 16
BspLI GGNNCC 2 cut(s) 1434, 1779
BspMAI CTGCAG 1 cut(s) 616
BspPI GGATC 8 cut(s) 22, 288, 462, 730, 1369, 1511, 1772, 1785
BspQI GCTCTTC 1 cut(s) 1196
BspT104I TTCGAA 1 cut(s) 602
BsrBI CCGCTC 1 cut(s) 420
BsrDI GCAATG 2 cut(s) 825, 1958
BsrFI RCCGGY 2 cut(s) 764, 1429
BsrGI TGTACA 1 cut(s) 1656
BsrI ACTGG 4 cut(s) 583, 1098, 1178, 1297
BssAI RCCGGY 2 cut(s) 764, 1429
BssECI CCNNGG 6 cut(s) 31, 390, 803, 1065, 1590, 1637
BssT1I CCWWGG 4 cut(s) 31, 390, 1065, 1590
Bst2UI CCWGG 3 cut(s) 1164, 1521, 1638
Bst4CI ACNGT 6 cut(s) 902, 919, 1026, 1228, 1240, 1315
Bst6I CTCTTC 6 cut(s) 39, 368, 681, 1196, 1296, 1730
BstAUI TGTACA 1 cut(s) 1656
BstBI TTCGAA 1 cut(s) 602
BstDEI CTNAG 6 cut(s) 465, 798, 1082, 1260, 1365, 1860
BstF5I GGATG 6 cut(s) 319, 948, 1063, 1344, 1846, 1925
BstHHI GCGC 3 cut(s) 1012, 1606, 1828
BstMAI GTCTC 3 cut(s) 710, 1217, 1266
BstNI CCWGG 3 cut(s) 1164, 1521, 1638
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 4 cut(s) 39, 1162, 1519, 1636
BstSFI CTRYAG 4 cut(s) 159, 612, 985, 1409
BstV1I GCAGC 4 cut(s) 598, 802, 933, 1613
BstV2I GAAGAC 5 cut(s) 89, 189, 611, 903, 1866
BstX2I RGATCY 3 cut(s) 27, 1361, 1777
BstYI RGATCY 3 cut(s) 27, 1361, 1777
BsuRI GGCC 2 cut(s) 1075, 1433
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 6 cut(s) 319, 948, 1063, 1344, 1846, 1925
BtsIMutI CAGTG 6 cut(s) 1022, 1029, 1105, 1233, 1236, 1290
CaiI CAGNNNCTG 1 cut(s) 1637
CfoI GCGC 3 cut(s) 1012, 1606, 1828
Cfr10I RCCGGY 2 cut(s) 764, 1429
Cfr13I GGNCC 2 cut(s) 1432, 1634
Csp6I GTAC 6 cut(s) 658, 795, 903, 928, 1353, 1657
CviAII CATG 5 cut(s) 90, 653, 869, 931, 1774
CviQI GTAC 6 cut(s) 658, 795, 903, 928, 1353, 1657
DdeI CTNAG 6 cut(s) 465, 798, 1082, 1260, 1365, 1860
Eam1104I CTCTTC 6 cut(s) 39, 368, 681, 1196, 1296, 1730
EarI CTCTTC 6 cut(s) 39, 368, 681, 1196, 1296, 1730
EciI GGCGGA 1 cut(s) 587
Eco130I CCWWGG 4 cut(s) 31, 390, 1065, 1590
Eco147I AGGCCT 1 cut(s) 1075
Eco24I GRGCYC 1 cut(s) 1680
Eco32I GATATC 1 cut(s) 1175
Eco47I GGWCC 1 cut(s) 1634
Eco57I CTGAAG 2 cut(s) 891, 1177
Eco88I CYCGRG 3 cut(s) 624, 834, 1549
EcoO109I RGGNCCY 1 cut(s) 1634
EcoRI GAATTC 1 cut(s) 52
EcoRII CCWGG 3 cut(s) 1162, 1519, 1636
EcoRV GATATC 1 cut(s) 1175
EcoT14I CCWWGG 4 cut(s) 31, 390, 1065, 1590
EcoT38I GRGCYC 1 cut(s) 1680
ErhI CCWWGG 4 cut(s) 31, 390, 1065, 1590
FaeI CATG 5 cut(s) 93, 656, 872, 934, 1777
FaqI GGGAC 1 cut(s) 1456
FatI CATG 5 cut(s) 89, 652, 868, 930, 1773
FauI CCCGC 1 cut(s) 413
FbaI TGATCA 2 cut(s) 346, 364
Fnu4HI GCNGC 4 cut(s) 612, 816, 947, 1602
FokI GGATG 6 cut(s) 326, 955, 1070, 1351, 1853, 1932
FriOI GRGCYC 1 cut(s) 1680
Fsp4HI GCNGC 4 cut(s) 612, 816, 947, 1602
FspBI CTAG 2 cut(s) 564, 1811
GlaI GCGC 3 cut(s) 1011, 1605, 1827
GluI GCNGC 4 cut(s) 612, 816, 947, 1602
GsaI CCCAGC 1 cut(s) 1832
GsuI CTGGAG 1 cut(s) 1081
HaeIII GGCC 2 cut(s) 1075, 1433
HapII CCGG 6 cut(s) 17, 41, 765, 1430, 1651, 1691
HhaI GCGC 3 cut(s) 1012, 1606, 1828
Hin1II CATG 5 cut(s) 93, 656, 872, 934, 1777
Hin6I GCGC 3 cut(s) 1010, 1604, 1826
HinP1I GCGC 3 cut(s) 1010, 1604, 1826
HincII GTYRAC 1 cut(s) 1488
HindII GTYRAC 1 cut(s) 1488
HindIII AAGCTT 1 cut(s) 444
HinfI GANTC 8 cut(s) 560, 649, 691, 1139, 1159, 1565, 1738, 1747
HpaI GTTAAC 1 cut(s) 1488
HpaII CCGG 6 cut(s) 17, 41, 765, 1430, 1651, 1691
HphI GGTGA 1 cut(s) 1862
Hpy166II GTNNAC 2 cut(s) 1029, 1488
Hpy8I GTNNAC 2 cut(s) 1029, 1488
Hpy99I CGWCG 1 cut(s) 1951
HpyAV CCTTC 9 cut(s) 211, 289, 315, 347, 408, 613, 1048, 1329, 1798
HpyCH4III ACNGT 6 cut(s) 902, 919, 1026, 1228, 1240, 1315
HpyCH4IV ACGT 2 cut(s) 1509, 1946
HpyCH4V TGCA 8 cut(s) 491, 614, 818, 1103, 1475, 1530, 1715, 1963
HpyF3I CTNAG 6 cut(s) 465, 798, 1082, 1260, 1365, 1860
HpySE526I ACGT 2 cut(s) 1509, 1946
Hsp92II CATG 5 cut(s) 93, 656, 872, 934, 1777
HspAI GCGC 3 cut(s) 1010, 1604, 1826
Kpn2I TCCGGA 1 cut(s) 16
Ksp22I TGATCA 2 cut(s) 346, 364
KspAI GTTAAC 1 cut(s) 1488
LguI GCTCTTC 1 cut(s) 1196
LmnI GCTCC 2 cut(s) 417, 436
Lsp1109I GCAGC 4 cut(s) 598, 802, 933, 1613
LweI GCATC 2 cut(s) 328, 933
MaeI CTAG 2 cut(s) 564, 1811
MaeII ACGT 2 cut(s) 1509, 1946
MaeIII GTNAC 4 cut(s) 430, 767, 1566, 1576
MbiI CCGCTC 1 cut(s) 420
MflI RGATCY 3 cut(s) 27, 1361, 1777
MhlI GDGCHC 1 cut(s) 1680
MluCI AATT 7 cut(s) 52, 60, 113, 132, 1324, 1762, 1845
MlyI GAGTC 3 cut(s) 569, 1574, 1747
MmeI TCCRAC 2 cut(s) 691, 856
MroI TCCGGA 1 cut(s) 16
MroXI GAANNNNTTC 1 cut(s) 1646
MseI TTAA 7 cut(s) 248, 308, 858, 1088, 1487, 1503, 1969
MspI CCGG 6 cut(s) 17, 41, 765, 1430, 1651, 1691
MspR9I CCNGG 4 cut(s) 41, 1164, 1521, 1638
MvaI CCWGG 3 cut(s) 1164, 1521, 1638
NciI CCSGG 1 cut(s) 41
NlaIII CATG 5 cut(s) 93, 656, 872, 934, 1777
NlaIV GGNNCC 2 cut(s) 1434, 1779
NmuCI GTSAC 1 cut(s) 1566
NspI RCATGY 1 cut(s) 93
NspV TTCGAA 1 cut(s) 602
PceI AGGCCT 1 cut(s) 1075
PciI ACATGT 1 cut(s) 89
PciSI GCTCTTC 1 cut(s) 1196
PdmI GAANNNNTTC 1 cut(s) 1646
PfeI GAWTC 5 cut(s) 649, 691, 1139, 1159, 1747
PfoI TCCNGGA 3 cut(s) 39, 1162, 1519
PkrI GCNGC 4 cut(s) 613, 817, 948, 1603
PleI GAGTC 3 cut(s) 568, 1573, 1746
PpsI GAGTC 3 cut(s) 568, 1573, 1746
PpuMI RGGWCCY 1 cut(s) 1634
PscI ACATGT 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 1634
Psp6I CCWGG 3 cut(s) 1162, 1519, 1636
PspFI CCCAGC 1 cut(s) 1828
PspGI CCWGG 3 cut(s) 1162, 1519, 1636
PspN4I GGNNCC 2 cut(s) 1434, 1779
PspPI GGNCC 2 cut(s) 1432, 1634
PspPPI RGGWCCY 1 cut(s) 1634
PstI CTGCAG 1 cut(s) 616
PstNI CAGNNNCTG 1 cut(s) 1637
PsuI RGATCY 3 cut(s) 27, 1361, 1777
RsaI GTAC 6 cut(s) 659, 796, 904, 929, 1354, 1658
RsaNI GTAC 6 cut(s) 658, 795, 903, 928, 1353, 1657
SapI GCTCTTC 1 cut(s) 1196
SaqAI TTAA 7 cut(s) 248, 308, 858, 1088, 1487, 1503, 1969
SatI GCNGC 4 cut(s) 612, 816, 947, 1602
Sau96I GGNCC 2 cut(s) 1432, 1634
SchI GAGTC 3 cut(s) 569, 1574, 1747
ScrFI CCNGG 4 cut(s) 41, 1164, 1521, 1638
SduI GDGCHC 1 cut(s) 1680
SfaNI GCATC 2 cut(s) 328, 933
SfcI CTRYAG 4 cut(s) 159, 612, 985, 1409
SfuI TTCGAA 1 cut(s) 602
SinI GGWCC 1 cut(s) 1634
SmlI CTYRAG 1 cut(s) 843
SmoI CTYRAG 1 cut(s) 843
Sse9I AATT 7 cut(s) 52, 60, 113, 132, 1324, 1762, 1845
SseBI AGGCCT 1 cut(s) 1075
SsiI CCGC 4 cut(s) 420, 572, 746, 1599
SspI AATATT 1 cut(s) 1471
SspMI CTAG 2 cut(s) 564, 1811
StuI AGGCCT 1 cut(s) 1075
StyD4I CCNGG 4 cut(s) 39, 1162, 1519, 1636
StyI CCWWGG 4 cut(s) 31, 390, 1065, 1590
TaaI ACNGT 6 cut(s) 902, 919, 1026, 1228, 1240, 1315
TaiI ACGT 2 cut(s) 1512, 1949
TaqI TCGA 7 cut(s) 56, 283, 589, 602, 978, 1308, 1881
TaqII GACCGA 2 cut(s) 1608, 1860
TasI AATT 7 cut(s) 52, 60, 113, 132, 1324, 1762, 1845
TatI WGTACW 4 cut(s) 794, 902, 927, 1656
TfiI GAWTC 5 cut(s) 649, 691, 1139, 1159, 1747
Tru1I TTAA 7 cut(s) 248, 308, 858, 1088, 1487, 1503, 1969
Tru9I TTAA 7 cut(s) 248, 308, 858, 1088, 1487, 1503, 1969
TscAI CASTG 6 cut(s) 1029, 1036, 1105, 1233, 1243, 1297
TseFI GTSAC 1 cut(s) 1566
TseI GCWGC 4 cut(s) 611, 815, 946, 1601
Tsp45I GTSAC 1 cut(s) 1566
TspDTI ATGAA 5 cut(s) 65, 641, 1762, 1857, 1946
TspGWI ACGGA 3 cut(s) 293, 449, 1462
TspRI CASTG 6 cut(s) 1029, 1036, 1105, 1233, 1243, 1297
VpaK11BI GGWCC 1 cut(s) 1634
XapI RAATTY 4 cut(s) 52, 113, 132, 1324
XbaI TCTAGA 1 cut(s) 1810
XceI RCATGY 1 cut(s) 93
XmnI GAANNNNTTC 1 cut(s) 1646
XspI CTAG 2 cut(s) 564, 1811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.