Pre-mRNA-splicing factor ATP-dependent RNA helicase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HA2_C | PF21010 | 297 - 357 | 5.5e-09 | Helicase associated domain (HA2), ratchet-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 600 |
| AarI | CACCTGC | 1 cut(s) | 784 |
| Acc36I | ACCTGC | 2 cut(s) | 477, 784 |
| AccB1I | GGYRCC | 1 cut(s) | 72 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 611 |
| AccII | CGCG | 1 cut(s) | 1027 |
| AciI | CCGC | 2 cut(s) | 869, 902 |
| AclWI | GGATC | 2 cut(s) | 891, 1065 |
| AcuI | CTGAAG | 1 cut(s) | 801 |
| AfaI | GTAC | 3 cut(s) | 459, 690, 923 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 82, 350, 611 |
| AflII | CTTAAG | 2 cut(s) | 290, 719 |
| AgeI | ACCGGT | 1 cut(s) | 968 |
| AgsI | TTSAA | 5 cut(s) | 143, 392, 412, 485, 915 |
| AjnI | CCWGG | 3 cut(s) | 518, 574, 669 |
| AleI | CACNNNNGTG | 1 cut(s) | 78 |
| AluBI | AGCT | 6 cut(s) | 192, 415, 425, 442, 724, 935 |
| AluI | AGCT | 6 cut(s) | 192, 415, 425, 442, 724, 935 |
| AlwI | GGATC | 2 cut(s) | 891, 1065 |
| AoxI | GGCC | 3 cut(s) | 216, 516, 555 |
| ApeKI | GCWGC | 1 cut(s) | 422 |
| AsiGI | ACCGGT | 1 cut(s) | 968 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 527 |
| AspLEI | GCGC | 1 cut(s) | 1027 |
| AspS9I | GGNCC | 3 cut(s) | 216, 516, 555 |
| AsuC2I | CCSGG | 1 cut(s) | 349 |
| AsuHPI | GGTGA | 5 cut(s) | 185, 364, 851, 952, 986 |
| BanI | GGYRCC | 1 cut(s) | 72 |
| BanII | GRGCYC | 1 cut(s) | 504 |
| BauI | CACGAG | 1 cut(s) | 801 |
| BbsI | GAAGAC | 3 cut(s) | 9, 105, 976 |
| BbvCI | CCTCAGC | 1 cut(s) | 936 |
| BbvI | GCAGC | 1 cut(s) | 434 |
| BccI | CCATC | 2 cut(s) | 206, 859 |
| BciT130I | CCWGG | 3 cut(s) | 520, 576, 671 |
| BclI | TGATCA | 1 cut(s) | 319 |
| BcnI | CCSGG | 1 cut(s) | 349 |
| BfaI | CTAG | 3 cut(s) | 42, 818, 897 |
| BfmI | CTRYAG | 1 cut(s) | 193 |
| BfrI | CTTAAG | 2 cut(s) | 290, 719 |
| BfuAI | ACCTGC | 2 cut(s) | 477, 784 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 478, 542 |
| BisI | GCNGC | 1 cut(s) | 423 |
| BlpI | GCTNAGC | 1 cut(s) | 931 |
| BlsI | GCNGC | 1 cut(s) | 424 |
| Bme1390I | CCNGG | 4 cut(s) | 349, 520, 576, 671 |
| BmgT120I | GGNCC | 3 cut(s) | 216, 516, 555 |
| BmiI | GGNNCC | 4 cut(s) | 74, 217, 517, 556 |
| BmrFI | CCNGG | 4 cut(s) | 349, 520, 576, 671 |
| BmrI | ACTGGG | 1 cut(s) | 621 |
| BmsI | GCATC | 3 cut(s) | 675, 739, 1003 |
| BmuI | ACTGGG | 1 cut(s) | 621 |
| BpiI | GAAGAC | 3 cut(s) | 9, 105, 976 |
| Bpu10I | CCTNAGC | 1 cut(s) | 936 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 931 |
| BpuEI | CTTGAG | 1 cut(s) | 495 |
| BpuMI | CCSGG | 1 cut(s) | 349 |
| BsaBI | GATNNNNATC | 1 cut(s) | 299 |
| BsaJI | CCNNGG | 3 cut(s) | 348, 574, 575 |
| BsaWI | WCCGGW | 3 cut(s) | 75, 308, 968 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 82, 350, 611 |
| Bse118I | RCCGGY | 1 cut(s) | 968 |
| Bse1I | ACTGG | 1 cut(s) | 616 |
| Bse3DI | GCAATG | 2 cut(s) | 1062, 1067 |
| Bse8I | GATNNNNATC | 1 cut(s) | 299 |
| BseBI | CCWGG | 3 cut(s) | 520, 576, 671 |
| BseDI | CCNNGG | 3 cut(s) | 348, 574, 575 |
| BseGI | GGATG | 2 cut(s) | 217, 666 |
| BseJI | GATNNNNATC | 1 cut(s) | 299 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 82, 350, 611 |
| BseMI | GCAATG | 2 cut(s) | 1062, 1067 |
| BseMII | CTCAG | 3 cut(s) | 825, 927, 945 |
| BseNI | ACTGG | 1 cut(s) | 616 |
| BseXI | GCAGC | 1 cut(s) | 434 |
| BseYI | CCCAGC | 1 cut(s) | 476 |
| Bsh1236I | CGCG | 1 cut(s) | 1027 |
| BshFI | GGCC | 3 cut(s) | 218, 518, 557 |
| BshNI | GGYRCC | 1 cut(s) | 72 |
| BshTI | ACCGGT | 1 cut(s) | 968 |
| BsiSI | CCGG | 4 cut(s) | 76, 309, 348, 969 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 82, 350, 611 |
| BsnI | GGCC | 3 cut(s) | 218, 518, 557 |
| Bsp1286I | GDGCHC | 1 cut(s) | 504 |
| Bsp143I | GATC | 5 cut(s) | 133, 319, 376, 883, 1057 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 931 |
| BspACI | CCGC | 2 cut(s) | 869, 902 |
| BspANI | GGCC | 3 cut(s) | 218, 518, 557 |
| BspCNI | CTCAG | 3 cut(s) | 826, 928, 944 |
| BspFNI | CGCG | 1 cut(s) | 1027 |
| BspHI | TCATGA | 1 cut(s) | 379 |
| BspLI | GGNNCC | 4 cut(s) | 74, 217, 517, 556 |
| BspMI | ACCTGC | 2 cut(s) | 477, 784 |
| BspPI | GGATC | 2 cut(s) | 891, 1065 |
| BspT107I | GGYRCC | 1 cut(s) | 72 |
| BspTI | CTTAAG | 2 cut(s) | 290, 719 |
| BsrDI | GCAATG | 2 cut(s) | 1062, 1067 |
| BsrFI | RCCGGY | 1 cut(s) | 968 |
| BsrI | ACTGG | 1 cut(s) | 616 |
| BssAI | RCCGGY | 1 cut(s) | 968 |
| BssECI | CCNNGG | 3 cut(s) | 348, 574, 575 |
| BssMI | GATC | 5 cut(s) | 133, 319, 376, 883, 1057 |
| BssSI | CACGAG | 1 cut(s) | 801 |
| Bst2BI | CACGAG | 1 cut(s) | 801 |
| Bst2UI | CCWGG | 3 cut(s) | 520, 576, 671 |
| Bst4CI | ACNGT | 2 cut(s) | 541, 753 |
| Bst6I | CTCTTC | 1 cut(s) | 378 |
| BstAFI | CTTAAG | 2 cut(s) | 290, 719 |
| BstC8I | GCNNGC | 2 cut(s) | 427, 474 |
| BstDEI | CTNAG | 4 cut(s) | 834, 931, 936, 1073 |
| BstF5I | GGATG | 2 cut(s) | 217, 666 |
| BstFNI | CGCG | 1 cut(s) | 1027 |
| BstHHI | GCGC | 1 cut(s) | 1027 |
| BstKTI | GATC | 5 cut(s) | 136, 322, 379, 886, 1060 |
| BstMBI | GATC | 5 cut(s) | 133, 319, 376, 883, 1057 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 431, 478, 542, 866, 908, 1022 |
| BstNI | CCWGG | 3 cut(s) | 520, 576, 671 |
| BstSCI | CCNGG | 4 cut(s) | 347, 518, 574, 669 |
| BstSFI | CTRYAG | 1 cut(s) | 193 |
| BstUI | CGCG | 1 cut(s) | 1027 |
| BstV1I | GCAGC | 1 cut(s) | 434 |
| BstV2I | GAAGAC | 3 cut(s) | 9, 105, 976 |
| BsuRI | GGCC | 3 cut(s) | 218, 518, 557 |
| BtsCI | GGATG | 2 cut(s) | 217, 666 |
| BtsIMutI | CAGTG | 1 cut(s) | 546 |
| BveI | ACCTGC | 2 cut(s) | 477, 784 |
| Cac8I | GCNNGC | 2 cut(s) | 427, 474 |
| CciI | TCATGA | 1 cut(s) | 379 |
| CfoI | GCGC | 1 cut(s) | 1027 |
| Cfr10I | RCCGGY | 1 cut(s) | 968 |
| Cfr13I | GGNCC | 3 cut(s) | 216, 516, 555 |
| Csp6I | GTAC | 3 cut(s) | 458, 689, 922 |
| CspAI | ACCGGT | 1 cut(s) | 968 |
| CviAII | CATG | 6 cut(s) | 161, 323, 380, 461, 958, 1089 |
| CviQI | GTAC | 3 cut(s) | 458, 689, 922 |
| DdeI | CTNAG | 4 cut(s) | 834, 931, 936, 1073 |
| DpnI | GATC | 5 cut(s) | 135, 321, 378, 885, 1059 |
| DpnII | GATC | 5 cut(s) | 133, 319, 376, 883, 1057 |
| Eam1104I | CTCTTC | 1 cut(s) | 378 |
| EarI | CTCTTC | 1 cut(s) | 378 |
| EciI | GGCGGA | 1 cut(s) | 884 |
| Eco24I | GRGCYC | 1 cut(s) | 504 |
| Eco32I | GATATC | 1 cut(s) | 244 |
| Eco57I | CTGAAG | 1 cut(s) | 801 |
| EcoRII | CCWGG | 3 cut(s) | 518, 574, 669 |
| EcoRV | GATATC | 1 cut(s) | 244 |
| EcoT22I | ATGCAT | 1 cut(s) | 1090 |
| EcoT38I | GRGCYC | 1 cut(s) | 504 |
| FaeI | CATG | 6 cut(s) | 164, 326, 383, 464, 961, 1092 |
| FatI | CATG | 6 cut(s) | 160, 322, 379, 460, 957, 1088 |
| FauNDI | CATATG | 1 cut(s) | 888 |
| FbaI | TGATCA | 1 cut(s) | 319 |
| Fnu4HI | GCNGC | 1 cut(s) | 423 |
| FokI | GGATG | 2 cut(s) | 224, 653 |
| FriOI | GRGCYC | 1 cut(s) | 504 |
| Fsp4HI | GCNGC | 1 cut(s) | 423 |
| FspBI | CTAG | 3 cut(s) | 42, 818, 897 |
| GlaI | GCGC | 1 cut(s) | 1026 |
| GluI | GCNGC | 1 cut(s) | 423 |
| GsaI | CCCAGC | 1 cut(s) | 480 |
| HaeIII | GGCC | 3 cut(s) | 218, 518, 557 |
| HapII | CCGG | 4 cut(s) | 76, 309, 348, 969 |
| HhaI | GCGC | 1 cut(s) | 1027 |
| Hin1II | CATG | 6 cut(s) | 164, 326, 383, 464, 961, 1092 |
| Hin6I | GCGC | 1 cut(s) | 1025 |
| HinP1I | GCGC | 1 cut(s) | 1025 |
| HindIII | AAGCTT | 1 cut(s) | 722 |
| HinfI | GANTC | 2 cut(s) | 91, 977 |
| HpaII | CCGG | 4 cut(s) | 76, 309, 348, 969 |
| HphI | GGTGA | 5 cut(s) | 185, 364, 851, 952, 986 |
| Hpy166II | GTNNAC | 3 cut(s) | 176, 341, 1081 |
| Hpy188I | TCNGA | 3 cut(s) | 24, 37, 52 |
| Hpy188III | TCNNGA | 3 cut(s) | 95, 380, 801 |
| Hpy8I | GTNNAC | 3 cut(s) | 176, 341, 1081 |
| HpyAV | CCTTC | 2 cut(s) | 101, 517 |
| HpyCH4III | ACNGT | 2 cut(s) | 541, 753 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 431, 478, 542, 866, 908, 1022 |
| HpyF3I | CTNAG | 4 cut(s) | 834, 931, 936, 1073 |
| Hsp92II | CATG | 6 cut(s) | 164, 326, 383, 464, 961, 1092 |
| HspAI | GCGC | 1 cut(s) | 1025 |
| Ksp22I | TGATCA | 1 cut(s) | 319 |
| Kzo9I | GATC | 5 cut(s) | 133, 319, 376, 883, 1057 |
| Lsp1109I | GCAGC | 1 cut(s) | 434 |
| LweI | GCATC | 3 cut(s) | 675, 739, 1003 |
| MaeI | CTAG | 3 cut(s) | 42, 818, 897 |
| MalI | GATC | 5 cut(s) | 135, 321, 378, 885, 1059 |
| MboI | GATC | 5 cut(s) | 133, 319, 376, 883, 1057 |
| MboII | GAAGA | 8 cut(s) | 3, 9, 110, 263, 395, 413, 416, 976 |
| MfeI | CAATTG | 1 cut(s) | 915 |
| MhlI | GDGCHC | 1 cut(s) | 504 |
| MluCI | AATT | 4 cut(s) | 111, 407, 742, 915 |
| MlyI | GAGTC | 1 cut(s) | 100 |
| MnlI | CCTC | 8 cut(s) | 76, 129, 519, 582, 780, 808, 829, 931 |
| Mph1103I | ATGCAT | 1 cut(s) | 1090 |
| MroXI | GAANNNNTTC | 1 cut(s) | 527 |
| MseI | TTAA | 7 cut(s) | 236, 260, 291, 335, 623, 720, 741 |
| MslI | CAYNNNNRTG | 2 cut(s) | 78, 1011 |
| MspA1I | CMGCKG | 2 cut(s) | 425, 935 |
| MspCI | CTTAAG | 2 cut(s) | 290, 719 |
| MspI | CCGG | 4 cut(s) | 76, 309, 348, 969 |
| MspR9I | CCNGG | 4 cut(s) | 349, 520, 576, 671 |
| MunI | CAATTG | 1 cut(s) | 915 |
| MvaI | CCWGG | 3 cut(s) | 520, 576, 671 |
| MvnI | CGCG | 1 cut(s) | 1027 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 431, 478, 542, 866, 908, 1022 |
| NciI | CCSGG | 1 cut(s) | 349 |
| NdeI | CATATG | 1 cut(s) | 888 |
| NdeII | GATC | 5 cut(s) | 133, 319, 376, 883, 1057 |
| NlaIII | CATG | 6 cut(s) | 164, 326, 383, 464, 961, 1092 |
| NlaIV | GGNNCC | 4 cut(s) | 74, 217, 517, 556 |
| NsiI | ATGCAT | 1 cut(s) | 1090 |
| OliI | CACNNNNGTG | 1 cut(s) | 78 |
| PagI | TCATGA | 1 cut(s) | 379 |
| PaqCI | CACCTGC | 1 cut(s) | 784 |
| PasI | CCCWGGG | 1 cut(s) | 575 |
| PdmI | GAANNNNTTC | 1 cut(s) | 527 |
| PfeI | GAWTC | 1 cut(s) | 977 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 611 |
| PinAI | ACCGGT | 1 cut(s) | 968 |
| PkrI | GCNGC | 1 cut(s) | 424 |
| PleI | GAGTC | 1 cut(s) | 99 |
| PpsI | GAGTC | 1 cut(s) | 99 |
| PsiI | TTATAA | 1 cut(s) | 600 |
| Psp6I | CCWGG | 3 cut(s) | 518, 574, 669 |
| PspFI | CCCAGC | 1 cut(s) | 476 |
| PspGI | CCWGG | 3 cut(s) | 518, 574, 669 |
| PspN4I | GGNNCC | 4 cut(s) | 74, 217, 517, 556 |
| PspPI | GGNCC | 3 cut(s) | 216, 516, 555 |
| PvuII | CAGCTG | 2 cut(s) | 425, 935 |
| RsaI | GTAC | 3 cut(s) | 459, 690, 923 |
| RsaNI | GTAC | 3 cut(s) | 458, 689, 922 |
| RseI | CAYNNNNRTG | 2 cut(s) | 78, 1011 |
| SaqAI | TTAA | 7 cut(s) | 236, 260, 291, 335, 623, 720, 741 |
| SatI | GCNGC | 1 cut(s) | 423 |
| Sau3AI | GATC | 5 cut(s) | 133, 319, 376, 883, 1057 |
| Sau96I | GGNCC | 3 cut(s) | 216, 516, 555 |
| SchI | GAGTC | 1 cut(s) | 100 |
| ScrFI | CCNGG | 4 cut(s) | 349, 520, 576, 671 |
| SduI | GDGCHC | 1 cut(s) | 504 |
| SfaNI | GCATC | 3 cut(s) | 675, 739, 1003 |
| SfcI | CTRYAG | 1 cut(s) | 193 |
| SgrAI | CRCCGGYG | 1 cut(s) | 968 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 78, 1011 |
| SmlI | CTYRAG | 3 cut(s) | 290, 510, 719 |
| SmoI | CTYRAG | 3 cut(s) | 290, 510, 719 |
| Sse9I | AATT | 4 cut(s) | 111, 407, 742, 915 |
| SsiI | CCGC | 2 cut(s) | 869, 902 |
| SspMI | CTAG | 3 cut(s) | 42, 818, 897 |
| StyD4I | CCNGG | 4 cut(s) | 347, 518, 574, 669 |
| TaaI | ACNGT | 2 cut(s) | 541, 753 |
| TaqI | TCGA | 2 cut(s) | 274, 991 |
| TasI | AATT | 4 cut(s) | 111, 407, 742, 915 |
| TatI | WGTACW | 2 cut(s) | 688, 921 |
| TfiI | GAWTC | 1 cut(s) | 977 |
| Tru1I | TTAA | 7 cut(s) | 236, 260, 291, 335, 623, 720, 741 |
| Tru9I | TTAA | 7 cut(s) | 236, 260, 291, 335, 623, 720, 741 |
| TscAI | CASTG | 1 cut(s) | 546 |
| TseI | GCWGC | 1 cut(s) | 422 |
| TspDTI | ATGAA | 6 cut(s) | 120, 162, 177, 396, 477, 1028 |
| TspGWI | ACGGA | 1 cut(s) | 709 |
| TspRI | CASTG | 1 cut(s) | 546 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 611 |
| Vha464I | CTTAAG | 2 cut(s) | 290, 719 |
| XmnI | GAANNNNTTC | 1 cut(s) | 527 |
| XspI | CTAG | 3 cut(s) | 42, 818, 897 |
| Zsp2I | ATGCAT | 1 cut(s) | 1090 |