Pre-mRNA-splicing factor ATP-dependent RNA helicase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DEAD | PF00270 | 361 - 511 | 2.8e-07 | DEAD/DEAH box helicase |
| Helicase_C | PF00271 | 559 - 685 | 7.7e-13 | Helicase conserved C-terminal domain |
| WHD_HA2 | PF04408 | 747 - 775 | 4.5e-11 | Helicase associated domain (HA2), winged-helix |
| HA2_C | PF21010 | 776 - 837 | 2.8e-10 | Helicase associated domain (HA2), ratchet-like |
| OB_NTP_bind | PF07717 | 895 - 972 | 5.8e-22 | Oligonucleotide/oligosaccharide-binding (OB)-fold |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2523 |
| AarI | CACCTGC | 1 cut(s) | 2227 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 140 |
| AatII | GACGTC | 1 cut(s) | 179 |
| AbsI | CCTCGAGG | 1 cut(s) | 2961 |
| Acc36I | ACCTGC | 3 cut(s) | 1172, 2024, 2227 |
| AccBSI | CCGCTC | 1 cut(s) | 2626 |
| AccI | GTMKAC | 2 cut(s) | 132, 2302 |
| AccII | CGCG | 3 cut(s) | 1080, 1225, 1230 |
| AccIII | TCCGGA | 1 cut(s) | 709 |
| AciI | CCGC | 5 cut(s) | 165, 617, 1223, 1225, 2626 |
| AcoI | YGGCCR | 1 cut(s) | 120 |
| AcsI | RAATTY | 4 cut(s) | 397, 1541, 2089, 2473 |
| AcuI | CTGAAG | 4 cut(s) | 41, 369, 2244, 2340 |
| AcyI | GRCGYC | 2 cut(s) | 176, 2015 |
| AdeI | CACNNNGTG | 1 cut(s) | 1691 |
| AfaI | GTAC | 8 cut(s) | 275, 524, 638, 1070, 1349, 2137, 2366, 2385 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 214, 709, 1976, 2792, 2793, 2926 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1764 |
| AjiI | CACGTC | 1 cut(s) | 2491 |
| AjnI | CCWGG | 4 cut(s) | 1582, 1687, 1939, 2056 |
| AleI | CACNNNNGTG | 1 cut(s) | 2557 |
| Alw21I | GWGCWC | 3 cut(s) | 811, 1663, 2375 |
| Alw26I | GTCTC | 4 cut(s) | 37, 164, 558, 2531 |
| Alw44I | GTGCAC | 2 cut(s) | 807, 1659 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1631 |
| Ama87I | CYCGRG | 1 cut(s) | 2961 |
| Aor13HI | TCCGGA | 1 cut(s) | 709 |
| AoxI | GGCC | 3 cut(s) | 120, 714, 1129 |
| ApaLI | GTGCAC | 2 cut(s) | 807, 1659 |
| ApoI | RAATTY | 4 cut(s) | 397, 1541, 2089, 2473 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1445, 1477, 2530, 2562 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1086, 2943 |
| AspA2I | CCTAGG | 1 cut(s) | 251 |
| AspLEI | GCGC | 5 cut(s) | 1080, 1230, 1432, 2260, 2980 |
| AspS9I | GGNCC | 2 cut(s) | 2054, 2839 |
| AsuC2I | CCSGG | 1 cut(s) | 2612 |
| AsuHPI | GGTGA | 6 cut(s) | 830, 1483, 1702, 1703, 2294, 2647 |
| AvaI | CYCGRG | 1 cut(s) | 2961 |
| AvaII | GGWCC | 2 cut(s) | 2054, 2839 |
| AvrII | CCTAGG | 1 cut(s) | 251 |
| BaeGI | GKGCMC | 3 cut(s) | 811, 1663, 2269 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1151, 1184 |
| BamHI | GGATCC | 2 cut(s) | 2209, 2326 |
| BauI | CACGAG | 3 cut(s) | 281, 424, 1433 |
| BbsI | GAAGAC | 3 cut(s) | 29, 1340, 1600 |
| Bbv12I | GWGCWC | 3 cut(s) | 811, 1663, 2375 |
| BccI | CCATC | 8 cut(s) | 1024, 1352, 1411, 1910, 1975, 2302, 2429, 2811 |
| BceAI | ACGGC | 1 cut(s) | 80 |
| BciT130I | CCWGG | 4 cut(s) | 1584, 1689, 1941, 2058 |
| BclI | TGATCA | 1 cut(s) | 481 |
| BcnI | CCSGG | 1 cut(s) | 2612 |
| BcoDI | GTCTC | 4 cut(s) | 37, 164, 558, 2531 |
| BfaI | CTAG | 6 cut(s) | 252, 1518, 1769, 1866, 2261, 2724 |
| BfmI | CTRYAG | 2 cut(s) | 1040, 2068 |
| BfuAI | ACCTGC | 3 cut(s) | 1172, 2024, 2227 |
| BlnI | CCTAGG | 1 cut(s) | 251 |
| BlpI | GCTNAGC | 1 cut(s) | 1785 |
| BmcAI | AGTACT | 1 cut(s) | 524 |
| Bme1390I | CCNGG | 5 cut(s) | 1584, 1689, 1941, 2058, 2612 |
| Bme18I | GGWCC | 2 cut(s) | 2054, 2839 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1764 |
| BmeT110I | CYCGRG | 1 cut(s) | 2961 |
| BmgBI | CACGTC | 1 cut(s) | 2491 |
| BmgT120I | GGNCC | 2 cut(s) | 2054, 2839 |
| BmiI | GGNNCC | 2 cut(s) | 2211, 2328 |
| BmrFI | CCNGG | 5 cut(s) | 1584, 1689, 1941, 2058, 2612 |
| BmrI | ACTGGG | 1 cut(s) | 2781 |
| BmsI | GCATC | 5 cut(s) | 227, 1202, 1522, 1633, 2946 |
| BmuI | ACTGGG | 1 cut(s) | 2781 |
| BoxI | GACNNNNGTC | 1 cut(s) | 29 |
| BpiI | GAAGAC | 3 cut(s) | 29, 1340, 1600 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1246, 1278 |
| BpmI | CTGGAG | 2 cut(s) | 410, 572 |
| Bpu10I | CCTNAGC | 1 cut(s) | 678 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1785 |
| BpuEI | CTTGAG | 3 cut(s) | 1076, 1248, 2642 |
| BpuMI | CCSGG | 1 cut(s) | 2612 |
| Bsa29I | ATCGAT | 1 cut(s) | 2942 |
| BsaBI | GATNNNNATC | 2 cut(s) | 15, 693 |
| BsaHI | GRCGYC | 2 cut(s) | 176, 2015 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaWI | WCCGGW | 4 cut(s) | 149, 702, 709, 1712 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 635, 665, 1155, 1185 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 214, 709, 1976, 2792, 2793, 2926 |
| Bse118I | RCCGGY | 2 cut(s) | 118, 122 |
| Bse1I | ACTGG | 7 cut(s) | 393, 555, 1141, 2056, 2416, 2488, 2787 |
| Bse3DI | GCAATG | 8 cut(s) | 481, 1245, 1479, 1890, 1988, 2502, 2507, 2700 |
| Bse8I | GATNNNNATC | 2 cut(s) | 15, 693 |
| BseAI | TCCGGA | 1 cut(s) | 709 |
| BseBI | CCWGG | 4 cut(s) | 1584, 1689, 1941, 2058 |
| BseCI | ATCGAT | 1 cut(s) | 2942 |
| BseGI | GGATG | 7 cut(s) | 688, 790, 1217, 1429, 1648, 1986, 2935 |
| BseJI | GATNNNNATC | 2 cut(s) | 15, 693 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 214, 709, 1976, 2792, 2793, 2926 |
| BseMI | GCAATG | 8 cut(s) | 481, 1245, 1479, 1890, 1988, 2502, 2507, 2700 |
| BseMII | CTCAG | 6 cut(s) | 1320, 1527, 1776, 1815, 2304, 2388 |
| BseNI | ACTGG | 7 cut(s) | 393, 555, 1141, 2056, 2416, 2488, 2787 |
| BseRI | GAGGAG | 5 cut(s) | 1061, 1066, 1987, 2393, 2979 |
| BseSI | GKGCMC | 3 cut(s) | 811, 1663, 2269 |
| BseX3I | CGGCCG | 1 cut(s) | 120 |
| BsgI | GTGCAG | 2 cut(s) | 1577, 2177 |
| Bsh1236I | CGCG | 3 cut(s) | 1080, 1225, 1230 |
| Bsh1285I | CGRYCG | 1 cut(s) | 123 |
| BshFI | GGCC | 3 cut(s) | 122, 716, 1131 |
| BshVI | ATCGAT | 1 cut(s) | 2942 |
| BsiEI | CGRYCG | 1 cut(s) | 123 |
| BsiHKAI | GWGCWC | 3 cut(s) | 811, 1663, 2375 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2961 |
| BsiSI | CCGG | 7 cut(s) | 119, 123, 150, 703, 710, 1713, 2611 |
| BslFI | GGGAC | 3 cut(s) | 191, 1565, 1786 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 214, 709, 1976, 2792, 2793, 2926 |
| BsmAI | GTCTC | 4 cut(s) | 37, 164, 558, 2531 |
| BsmBI | CGTCTC | 2 cut(s) | 164, 558 |
| BsmFI | GGGAC | 3 cut(s) | 191, 1565, 1786 |
| BsnI | GGCC | 3 cut(s) | 122, 716, 1131 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| BsoBI | CYCGRG | 1 cut(s) | 2961 |
| Bsp1286I | GDGCHC | 4 cut(s) | 811, 1663, 2269, 2375 |
| Bsp13I | TCCGGA | 1 cut(s) | 709 |
| Bsp1407I | TGTACA | 1 cut(s) | 1068 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1785 |
| BspACI | CCGC | 5 cut(s) | 165, 617, 1223, 1225, 2626 |
| BspANI | GGCC | 3 cut(s) | 122, 716, 1131 |
| BspCNI | CTCAG | 6 cut(s) | 1321, 1528, 1777, 1816, 2305, 2387 |
| BspDI | ATCGAT | 1 cut(s) | 2942 |
| BspEI | TCCGGA | 1 cut(s) | 709 |
| BspFNI | CGCG | 3 cut(s) | 1080, 1225, 1230 |
| BspHI | TCATGA | 2 cut(s) | 484, 2830 |
| BspLI | GGNNCC | 2 cut(s) | 2211, 2328 |
| BspMAI | CTGCAG | 1 cut(s) | 1044 |
| BspMI | ACCTGC | 3 cut(s) | 1172, 2024, 2227 |
| BspQI | GCTCTTC | 1 cut(s) | 2162 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BsrBI | CCGCTC | 1 cut(s) | 2626 |
| BsrDI | GCAATG | 8 cut(s) | 481, 1245, 1479, 1890, 1988, 2502, 2507, 2700 |
| BsrFI | RCCGGY | 2 cut(s) | 118, 122 |
| BsrGI | TGTACA | 1 cut(s) | 1068 |
| BsrI | ACTGG | 7 cut(s) | 393, 555, 1141, 2056, 2416, 2488, 2787 |
| BssAI | RCCGGY | 2 cut(s) | 118, 122 |
| BssNI | GRCGYC | 2 cut(s) | 176, 2015 |
| BssSI | CACGAG | 3 cut(s) | 281, 424, 1433 |
| BssT1I | CCWWGG | 4 cut(s) | 251, 2173, 2241, 2850 |
| Bst2BI | CACGAG | 3 cut(s) | 281, 424, 1433 |
| Bst2UI | CCWGG | 4 cut(s) | 1584, 1689, 1941, 2058 |
| Bst4CI | ACNGT | 6 cut(s) | 925, 1167, 1339, 1409, 2250, 2755 |
| Bst6I | CTCTTC | 5 cut(s) | 315, 746, 880, 1077, 2162 |
| BstACI | GRCGYC | 2 cut(s) | 176, 2015 |
| BstAUI | TGTACA | 1 cut(s) | 1068 |
| BstC8I | GCNNGC | 5 cut(s) | 120, 124, 1217, 2799, 2976 |
| BstDEI | CTNAG | 8 cut(s) | 678, 1191, 1329, 1536, 1785, 1824, 2313, 2374 |
| BstDSI | CCRYGG | 2 cut(s) | 762, 1223 |
| BstF5I | GGATG | 7 cut(s) | 688, 790, 1217, 1429, 1648, 1986, 2935 |
| BstFNI | CGCG | 3 cut(s) | 1080, 1225, 1230 |
| BstHHI | GCGC | 5 cut(s) | 1080, 1230, 1432, 2260, 2980 |
| BstMAI | GTCTC | 4 cut(s) | 37, 164, 558, 2531 |
| BstMCI | CGRYCG | 1 cut(s) | 123 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 514, 1025, 1225, 1825, 2264, 2351, 2462, 2626 |
| BstNI | CCWGG | 4 cut(s) | 1584, 1689, 1941, 2058 |
| BstNSI | RCATGY | 4 cut(s) | 139, 345, 815, 1100 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 29 |
| BstSCI | CCNGG | 5 cut(s) | 1582, 1687, 1939, 2056, 2610 |
| BstSFI | CTRYAG | 2 cut(s) | 1040, 2068 |
| BstSLI | GKGCMC | 3 cut(s) | 811, 1663, 2269 |
| BstUI | CGCG | 3 cut(s) | 1080, 1225, 1230 |
| BstV2I | GAAGAC | 3 cut(s) | 29, 1340, 1600 |
| BstX2I | RGATCY | 2 cut(s) | 2209, 2326 |
| BstYI | RGATCY | 2 cut(s) | 2209, 2326 |
| BstZI | CGGCCG | 1 cut(s) | 120 |
| Bsu15I | ATCGAT | 1 cut(s) | 2942 |
| BsuRI | GGCC | 3 cut(s) | 122, 716, 1131 |
| BsuTUI | ATCGAT | 1 cut(s) | 2942 |
| BtgI | CCRYGG | 2 cut(s) | 762, 1223 |
| BtgZI | GCGATG | 2 cut(s) | 76, 1043 |
| BtrI | CACGTC | 1 cut(s) | 2491 |
| BtsCI | GGATG | 7 cut(s) | 688, 790, 1217, 1429, 1648, 1986, 2935 |
| BtsIMutI | CAGTG | 7 cut(s) | 1414, 1552, 1663, 2228, 2409, 2481, 2760 |
| BveI | ACCTGC | 3 cut(s) | 1172, 2024, 2227 |
| Cac8I | GCNNGC | 5 cut(s) | 120, 124, 1217, 2799, 2976 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1631 |
| CciI | TCATGA | 2 cut(s) | 484, 2830 |
| CfoI | GCGC | 5 cut(s) | 1080, 1230, 1432, 2260, 2980 |
| Cfr10I | RCCGGY | 2 cut(s) | 118, 122 |
| Cfr13I | GGNCC | 2 cut(s) | 2054, 2839 |
| Cfr42I | CCGCGG | 1 cut(s) | 1226 |
| ClaI | ATCGAT | 1 cut(s) | 2942 |
| CseI | GACGC | 1 cut(s) | 2004 |
| CsiI | ACCWGGT | 1 cut(s) | 1687 |
| Csp6I | GTAC | 8 cut(s) | 274, 523, 637, 1069, 1348, 2136, 2365, 2384 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1873, 1908 |
| CviQI | GTAC | 8 cut(s) | 274, 523, 637, 1069, 1348, 2136, 2365, 2384 |
| DdeI | CTNAG | 8 cut(s) | 678, 1191, 1329, 1536, 1785, 1824, 2313, 2374 |
| DraI | TTTAAA | 1 cut(s) | 2095 |
| DraIII | CACNNNGTG | 1 cut(s) | 1691 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 140 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1764 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 140 |
| EaeI | YGGCCR | 1 cut(s) | 120 |
| EagI | CGGCCG | 1 cut(s) | 120 |
| Eam1104I | CTCTTC | 5 cut(s) | 315, 746, 880, 1077, 2162 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1764 |
| EarI | CTCTTC | 5 cut(s) | 315, 746, 880, 1077, 2162 |
| EclXI | CGGCCG | 1 cut(s) | 120 |
| Eco130I | CCWWGG | 4 cut(s) | 251, 2173, 2241, 2850 |
| Eco147I | AGGCCT | 1 cut(s) | 716 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco32I | GATATC | 1 cut(s) | 2608 |
| Eco47I | GGWCC | 2 cut(s) | 2054, 2839 |
| Eco52I | CGGCCG | 1 cut(s) | 120 |
| Eco57I | CTGAAG | 4 cut(s) | 41, 369, 2244, 2340 |
| Eco88I | CYCGRG | 1 cut(s) | 2961 |
| EcoRII | CCWGG | 4 cut(s) | 1582, 1687, 1939, 2056 |
| EcoRV | GATATC | 1 cut(s) | 2608 |
| EcoT14I | CCWWGG | 4 cut(s) | 251, 2173, 2241, 2850 |
| ErhI | CCWWGG | 4 cut(s) | 251, 2173, 2241, 2850 |
| Esp3I | CGTCTC | 2 cut(s) | 164, 558 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1863, 1895 |
| FaqI | GGGAC | 3 cut(s) | 191, 1565, 1786 |
| FbaI | TGATCA | 1 cut(s) | 481 |
| FblI | GTMKAC | 2 cut(s) | 132, 2302 |
| FokI | GGATG | 7 cut(s) | 695, 797, 1224, 1436, 1655, 1993, 2942 |
| FspBI | CTAG | 6 cut(s) | 252, 1518, 1769, 1866, 2261, 2724 |
| GlaI | GCGC | 5 cut(s) | 1079, 1229, 1431, 2259, 2979 |
| GsuI | CTGGAG | 2 cut(s) | 410, 572 |
| HaeIII | GGCC | 3 cut(s) | 122, 716, 1131 |
| HapII | CCGG | 7 cut(s) | 119, 123, 150, 703, 710, 1713, 2611 |
| HgaI | GACGC | 1 cut(s) | 2004 |
| HhaI | GCGC | 5 cut(s) | 1080, 1230, 1432, 2260, 2980 |
| Hin1I | GRCGYC | 2 cut(s) | 176, 2015 |
| Hin6I | GCGC | 5 cut(s) | 1078, 1228, 1430, 2258, 2978 |
| HinP1I | GCGC | 5 cut(s) | 1078, 1228, 1430, 2258, 2978 |
| HincII | GTYRAC | 1 cut(s) | 133 |
| HindII | GTYRAC | 1 cut(s) | 133 |
| HindIII | AAGCTT | 4 cut(s) | 495, 656, 825, 1280 |
| HinfI | GANTC | 9 cut(s) | 706, 1010, 1559, 1985, 2647, 2662, 2761, 2939, 2944 |
| HpaII | CCGG | 7 cut(s) | 119, 123, 150, 703, 710, 1713, 2611 |
| HphI | GGTGA | 6 cut(s) | 830, 1483, 1702, 1703, 2294, 2647 |
| Hpy166II | GTNNAC | 6 cut(s) | 82, 133, 286, 809, 1661, 2303 |
| Hpy188III | TCNNGA | 6 cut(s) | 485, 710, 1265, 1447, 1529, 2831 |
| Hpy8I | GTNNAC | 6 cut(s) | 82, 133, 286, 809, 1661, 2303 |
| Hpy99I | CGWCG | 5 cut(s) | 178, 181, 267, 472, 2492 |
| HpyAV | CCTTC | 9 cut(s) | 397, 403, 793, 849, 884, 1468, 2335, 2683, 2963 |
| HpyCH4III | ACNGT | 6 cut(s) | 925, 1167, 1339, 1409, 2250, 2755 |
| HpyCH4IV | ACGT | 4 cut(s) | 176, 625, 2134, 2490 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 514, 1025, 1225, 1825, 2264, 2351, 2462, 2626 |
| HpyF3I | CTNAG | 8 cut(s) | 678, 1191, 1329, 1536, 1785, 1824, 2313, 2374 |
| HpySE526I | ACGT | 4 cut(s) | 176, 625, 2134, 2490 |
| Hsp92I | GRCGYC | 2 cut(s) | 176, 2015 |
| HspAI | GCGC | 5 cut(s) | 1078, 1228, 1430, 2258, 2978 |
| Kpn2I | TCCGGA | 1 cut(s) | 709 |
| KroI | GCCGGC | 2 cut(s) | 118, 122 |
| KroNI | GCCGGC | 2 cut(s) | 120, 124 |
| Ksp22I | TGATCA | 1 cut(s) | 481 |
| KspI | CCGCGG | 1 cut(s) | 1226 |
| LguI | GCTCTTC | 1 cut(s) | 2162 |
| LmnI | GCTCC | 7 cut(s) | 382, 538, 553, 643, 1570, 2586, 2911 |
| LweI | GCATC | 5 cut(s) | 227, 1202, 1522, 1633, 2946 |
| MabI | ACCWGGT | 1 cut(s) | 1687 |
| MaeI | CTAG | 6 cut(s) | 252, 1518, 1769, 1866, 2261, 2724 |
| MaeII | ACGT | 4 cut(s) | 176, 625, 2134, 2490 |
| MaeIII | GTNAC | 8 cut(s) | 97, 925, 1002, 1298, 1403, 1996, 2561, 2705 |
| MbiI | CCGCTC | 1 cut(s) | 2626 |
| MfeI | CAATTG | 2 cut(s) | 1650, 2391 |
| MflI | RGATCY | 2 cut(s) | 2209, 2326 |
| MhlI | GDGCHC | 4 cut(s) | 811, 1663, 2269, 2375 |
| MlyI | GAGTC | 1 cut(s) | 1994 |
| MmeI | TCCRAC | 2 cut(s) | 60, 2709 |
| MroI | TCCGGA | 1 cut(s) | 709 |
| MroNI | GCCGGC | 2 cut(s) | 118, 122 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1086, 2943 |
| MseI | TTAA | 5 cut(s) | 44, 231, 527, 741, 2094 |
| MslI | CAYNNNNRTG | 3 cut(s) | 95, 932, 2557 |
| MspA1I | CMGCKG | 1 cut(s) | 1225 |
| MspI | CCGG | 7 cut(s) | 119, 123, 150, 703, 710, 1713, 2611 |
| MspR9I | CCNGG | 5 cut(s) | 1584, 1689, 1941, 2058, 2612 |
| MunI | CAATTG | 2 cut(s) | 1650, 2391 |
| MvaI | CCWGG | 4 cut(s) | 1584, 1689, 1941, 2058 |
| MvnI | CGCG | 3 cut(s) | 1080, 1225, 1230 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 514, 1025, 1225, 1825, 2264, 2351, 2462, 2626 |
| NaeI | GCCGGC | 2 cut(s) | 120, 124 |
| NciI | CCSGG | 1 cut(s) | 2612 |
| NgoMIV | GCCGGC | 2 cut(s) | 118, 122 |
| NlaIV | GGNNCC | 2 cut(s) | 2211, 2328 |
| NmeAIII | GCCGAG | 1 cut(s) | 193 |
| NmuCI | GTSAC | 3 cut(s) | 97, 925, 1996 |
| NspI | RCATGY | 4 cut(s) | 139, 345, 815, 1100 |
| OliI | CACNNNNGTG | 1 cut(s) | 2557 |
| PaeR7I | CTCGAG | 1 cut(s) | 2961 |
| PagI | TCATGA | 2 cut(s) | 484, 2830 |
| PaqCI | CACCTGC | 1 cut(s) | 2227 |
| PceI | AGGCCT | 1 cut(s) | 716 |
| PciSI | GCTCTTC | 1 cut(s) | 2162 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 138 |
| PdiI | GCCGGC | 2 cut(s) | 120, 124 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1086, 2943 |
| PfeI | GAWTC | 8 cut(s) | 706, 1010, 1559, 2647, 2662, 2761, 2939, 2944 |
| PflFI | GACNNNGTC | 2 cut(s) | 175, 923 |
| PfoI | TCCNGGA | 1 cut(s) | 2610 |
| PleI | GAGTC | 1 cut(s) | 1993 |
| PpsI | GAGTC | 1 cut(s) | 1993 |
| PshAI | GACNNNNGTC | 1 cut(s) | 29 |
| PsiI | TTATAA | 1 cut(s) | 2523 |
| Psp6I | CCWGG | 4 cut(s) | 1582, 1687, 1939, 2056 |
| PspGI | CCWGG | 4 cut(s) | 1582, 1687, 1939, 2056 |
| PspN4I | GGNNCC | 2 cut(s) | 2211, 2328 |
| PspPI | GGNCC | 2 cut(s) | 2054, 2839 |
| PspXI | VCTCGAGB | 1 cut(s) | 2961 |
| PstI | CTGCAG | 1 cut(s) | 1044 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1631 |
| PsuI | RGATCY | 2 cut(s) | 2209, 2326 |
| PsyI | GACNNNGTC | 2 cut(s) | 175, 923 |
| RsaI | GTAC | 8 cut(s) | 275, 524, 638, 1070, 1349, 2137, 2366, 2385 |
| RsaNI | GTAC | 8 cut(s) | 274, 523, 637, 1069, 1348, 2136, 2365, 2384 |
| RseI | CAYNNNNRTG | 3 cut(s) | 95, 932, 2557 |
| SacII | CCGCGG | 1 cut(s) | 1226 |
| SalI | GTCGAC | 1 cut(s) | 131 |
| SapI | GCTCTTC | 1 cut(s) | 2162 |
| SaqAI | TTAA | 5 cut(s) | 44, 231, 527, 741, 2094 |
| Sau96I | GGNCC | 2 cut(s) | 2054, 2839 |
| ScaI | AGTACT | 1 cut(s) | 524 |
| SchI | GAGTC | 1 cut(s) | 1994 |
| ScrFI | CCNGG | 5 cut(s) | 1584, 1689, 1941, 2058, 2612 |
| SduI | GDGCHC | 4 cut(s) | 811, 1663, 2269, 2375 |
| SexAI | ACCWGGT | 1 cut(s) | 1687 |
| SfaNI | GCATC | 5 cut(s) | 227, 1202, 1522, 1633, 2946 |
| SfcI | CTRYAG | 2 cut(s) | 1040, 2068 |
| Sfr274I | CTCGAG | 1 cut(s) | 2961 |
| Sfr303I | CCGCGG | 1 cut(s) | 1226 |
| SgrBI | CCGCGG | 1 cut(s) | 1226 |
| SinI | GGWCC | 2 cut(s) | 2054, 2839 |
| SlaI | CTCGAG | 1 cut(s) | 2961 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 95, 932, 2557 |
| SmlI | CTYRAG | 4 cut(s) | 1091, 1263, 2621, 2961 |
| SmoI | CTYRAG | 4 cut(s) | 1091, 1263, 2621, 2961 |
| SseBI | AGGCCT | 1 cut(s) | 716 |
| SsiI | CCGC | 5 cut(s) | 165, 617, 1223, 1225, 2626 |
| SspMI | CTAG | 6 cut(s) | 252, 1518, 1769, 1866, 2261, 2724 |
| StuI | AGGCCT | 1 cut(s) | 716 |
| StyD4I | CCNGG | 5 cut(s) | 1582, 1687, 1939, 2056, 2610 |
| StyI | CCWWGG | 4 cut(s) | 251, 2173, 2241, 2850 |
| TaaI | ACNGT | 6 cut(s) | 925, 1167, 1339, 1409, 2250, 2755 |
| TaiI | ACGT | 4 cut(s) | 179, 628, 2137, 2493 |
| TatI | WGTACW | 5 cut(s) | 522, 636, 1068, 1347, 2364 |
| TauI | GCSGC | 3 cut(s) | 1225, 1228, 2629 |
| TfiI | GAWTC | 8 cut(s) | 706, 1010, 1559, 2647, 2662, 2761, 2939, 2944 |
| Tru1I | TTAA | 5 cut(s) | 44, 231, 527, 741, 2094 |
| Tru9I | TTAA | 5 cut(s) | 44, 231, 527, 741, 2094 |
| TscAI | CASTG | 7 cut(s) | 1414, 1552, 1663, 2235, 2416, 2488, 2760 |
| TseFI | GTSAC | 3 cut(s) | 97, 925, 1996 |
| Tsp45I | GTSAC | 3 cut(s) | 97, 925, 1996 |
| TspDTI | ATGAA | 9 cut(s) | 309, 372, 560, 687, 801, 1751, 1970, 2194, 2606 |
| TspGWI | ACGGA | 1 cut(s) | 751 |
| TspRI | CASTG | 7 cut(s) | 1414, 1552, 1663, 2235, 2416, 2488, 2760 |
| Tth111I | GACNNNGTC | 2 cut(s) | 175, 923 |
| VneI | GTGCAC | 2 cut(s) | 807, 1659 |
| VpaK11BI | GGWCC | 2 cut(s) | 2054, 2839 |
| XapI | RAATTY | 4 cut(s) | 397, 1541, 2089, 2473 |
| XceI | RCATGY | 4 cut(s) | 139, 345, 815, 1100 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2794 |
| XhoI | CTCGAG | 1 cut(s) | 2961 |
| XmaJI | CCTAGG | 1 cut(s) | 251 |
| XmiI | GTMKAC | 2 cut(s) | 132, 2302 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1086, 2943 |
| XspI | CTAG | 6 cut(s) | 252, 1518, 1769, 1866, 2261, 2724 |
| ZraI | GACGTC | 1 cut(s) | 177 |
| ZrmI | AGTACT | 1 cut(s) | 524 |