Rorug06G0449300

UDP-glucose 6-dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001872
Physical Location & Seq
Forward (+)
57919420 .. 57931564
12145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0449300.1

Sequence Viewer

Length: 3510 bp
ATGATTCATTTCCACAGGACCTTCTCATTGACAGCTCCTTCTTCCTCTTCATTCATGTTCTCATACCCTTCAACTTCTTCAGCTCTCAGACTCCGCCTCTCCATGGCCAAGCTGCAGTGTAGGGCGTTTGAGCATTATCGGGGCACTTGCTTGCCGTCTTCTCCAGTTTTGACATTGAATAATTACCCAAACTATTCCCAGCTTAGGTTTAGAAAATCCAGAGTTTCTTGCATGATCACGTCCTACAGTGCGAAAGTTGGGCCGACTTTTGCTCCTTTGAGAAGAAGTGGTGATGGATTTCAACGTGCTTTTAGCATTGATTCACACTTAAGACCGCGTGCCCTTAATGCTTTGGGGACTGCTAATGTTATGAGTCGTGGGTTTTTTGGAAATGGCTGTAGATCGAGTTTATTGGATTCTAGAGTTGGAGATTTTTCCAAGAGGTTTTTGTCTCAAGTTCCGGACGTGACAAGTAAAGTAGAGAATGTGGGCTCCCATGATGGCAGGAGGCCTGGAAATAGAAAATGGTTCAAAATAATGATTAGCAATCGCAAGAAATTGAAAAAGGCATTGGCTACTCAAAGTGAAACTGAAGCTACTGTTTCGAGCATCTCCAAAGATGCTGATGTAAAAGTTTCAAATGAAAAGCAGGTTGGAAGTGAGAAGGAGGATGAGAAGCTTGGATCATCAACTTCAGATTCGCCTATAAGCAAAACTAAAGAGGTCTCTAAACCAAAAGCAAAAAAGAGGTCGAAAAGCAAGAAAATTAAAGAACAAGATTCTGCTGCTAATGCTATAGCAGAAGCTGCTTCGACACAAAGTTCTGAAAGTACTTCTCAAACAAAGAAATCTGGCAGGAACAAAAAAGGAGCAAAGTCTGCACAGGATTCAGAGACTCCAGTAGACCTTGCTGATAGTTCAACAACAAAACCCCAGAGAAACAAGAAAGGTGAGAAGGAAAAATCTATAAATTCAGCTGCCAAGTCACCACAGAAACTTATACCACAAGAAATGGGTAAATTGAAACCTCCTGGAAAAATGACAACGAAGCAGCTGTACCCCGCAACTGGGAAAACTGTTGTGGTAGTGGAATCTGTTACAAAGGCGAAGGTTATTCAGGGTTATCTTGGTGATATGTTTGAAGTGCTGCCTAGCTATGGTCATGTGAGGGACTTGGCAGCTAGGTCAGGATCTGTGCGGCCCGATGATGATTTTAGTATGGTGTGGGAAGTTCCATCTGCTGCCTGGACTCATCTTAAGAGCATAAAGGTCGCCCTAAGTGGTGCAGAAAATCTTATCCTTGCATCAGATCCTGATCGTGAAGGAGAGGCTATTGCTTGGCATATTATTGAGATGCTGCAACAACAGGATGCTTTACGTAAAGATATTTATGTAGCAAGGGTTGTCTTTCATGAAATCACTGAGGCCTCCATCAAAAGTGCTCTGCAGGCTCCAAGAGAAATTGATCAAAATTTGGTCCATGCTTACCTTGCACGGCGTGCTCTTGATTATTTGATCGGATTTAACATTTCACCGTTGCTATGGAGGAAACTACCAAGTTGCCAGTCTGCCGGGCGAGTCCAATCTGCTGCACTAGCTCTTGTATGCGACAGGGAAATGGAAATCGACAGATTTAAACCACAAGAATATTGGACTATTGATATTGAATTGAACAAAAAAGAACCAGATTCATCAGTGAATGCCATATCCTTGCCAGCGCACTTGACCCATTTTGATTCCAAAAAGTTGGACCAATTTTCTATCAGTTCTCATACAGAGGCAAAAGATATTGAGCAGCAAATTAATTCAGAAGCTTTTAAAGTTATCAGCTCTAAGAGAAACAAAATGCGGAAGAACCCTCCTATGCCTTATATAACATCAACACTTCAGCAGGATGCCGCAAACAAATTACATTTCAGTGCAACATATACAATGAAGCTTGCACAGAAGCTTTATGAGGGGGTTCAATTATCTGATGGCAAGTCAACGGGTTTGATCACATACACCAGAACAGATGGACTACACATTTCGGATGAAGCAGTAGAAGATGTTCGCTCCTTGGTCATCGAAAGGTATGGACAGAACTTTGCATCAGCTACTCCACGCAAGTTTTTTAAGAAGGTGAAGAATGCTCAGGAGGCCCATGAAGCAATCAGACCTACTGATGTTCAAAGATTTCCATCGTTGCTCAGAGGGATACTTGATGAAGATTCATTGAAGTTGTACACTCTTATTTGGTGTCGGACAGTTGCATGCCAAATGGAGCTTGCTACAATTGAGCAGATACAACTTGATATTGGAAATGCTGGTGAGTCCATTGTTTTCCGATCTGCATGCTCAAGGGTTCAGTTCCTTGGATATCAGGCAGTTTTTCAGGACGTGGAAGCTGGAGCCGTCAAATATAAAGAAAATGAAGGGATCAACCGGGATGAAGCTTTTGCACTTCTTGATTCACTGAAGGTTGGCAGTCCAGTGCATCTTGGTGAAGTGGAACTCAAGCAACACCATACCCAACCTCCTCCACGCTACTCTGAGGCATCATTGGTTAAGAAATTAGAGGAGCTTGGGATTGGAAGACCTTCAACATATGCAAGCACTATAAAGGTTTTACAGGACAGAAACTATCTGACAGTGAAAAGCCGTGTTTTACATCCAGAGTTTCGTGGTCGTATGGTGTCAGCATTTCTCTGCCACCATTTTTCTGAGGTCACAGATTATAGCTTCACAGCTGATATGGAGACCGAGCTTGATAATGTCTCTGCTGGCTTAACTGAATGGAAAGGCCTCCTAAGAGATTACTGGACTCGATTCAGTGGTTATTGTGAGCGTACCAGTAATGTGACTATCCATCAGGTGGAGAAAATGATGGAAAAAAAATTTGGAGACTTCTTGTTTGCTACCCTCCCTGACCAAAGCAGGACATGTCCAAGCTGTAATGAAGGAACTTTGATCTTCAAAGTGAGTCGATTCGGTGCAGGCTATTTCATAGGTTGTGATACACACCCAAAGTGCAAGTACATTGCTAAGACATTGTATGGTAATGAAGAAGAAGACGACAATACTCCGAAGAACAACAGGGTGGAGGAACCAAAATTGTTAGGTTTATCTCCCGGTTCCAATGAAAAGGTTCTTTTGAAGACTGGTCCTTATGGATCGTATGTACAACTTGGTGAAGACAGGAAGGGATACTCACCTAAAAGAGCCTCTATAGCACATATCAAGGATGTGAACTCAGTAACCGTTGAAGTTGCTCTGGAGTTGATGCGATATCCTGTGACATTGGGGAACCATCCGAAGGATGGGCTTCCAGTGATTTTAAAGATTGCAAGGTCCGGATATATAGTTAAACATCGACGCACAATGGCTTCTCTAACGAAGAATCAGGAACCTAATAAATTAACCCTGGAGGACGCATTGGAACTTTTGTCTGGGAAAAATACACGGAAAATTGGTCGACCCAAGGGAAAATCAAAGGTTGAAGAAAAAGGAGAAGCTATAGAAGCCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00040 ko00053 ko00520 ko01100 map00040 map00053 map00520 map01100
Pfam Domains
Protein Families
UDPG_MGDP_dh UDPG_MGDP_dh_C UDPG_MGDP_dh_N

Protein Analysis

1169

Amino Acids

130.44

Weight (kDa)

9.36

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Toprim PF01751 359 - 472 1.9e-16 Toprim domain
Topoisom_bac PF01131 488 - 929 2.1e-111 DNA topoisomerase
Zn_ribbon_Top1 PF01396 973 - 1009 6.7e-09 Topoisomerase DNA binding C4 zinc finger
Toprim_C_rpt PF13368 1037 - 1091 1e-08 Topoisomerase C-terminal repeat
Toprim_C_rpt PF13368 1097 - 1148 1.1e-07 Topoisomerase C-terminal repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 640
AccB7I CCANNNNNTGG 1 cut(s) 2854
AccI GTMKAC 2 cut(s) 903, 3454
AccII CGCG 1 cut(s) 337
AccIII TCCGGA 2 cut(s) 460, 3332
AciI CCGC 6 cut(s) 94, 335, 1062, 1198, 1849, 1899
AclWI GGATC 5 cut(s) 691, 1198, 1304, 2426, 3160
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 3 cut(s) 970, 1471, 2876
AcuI CTGAAG 5 cut(s) 63, 612, 678, 1871, 2477
AdeI CACNNNGTG 1 cut(s) 1499
AfaI GTAC 6 cut(s) 832, 1058, 2225, 2830, 3017, 3162
AfiI CCNNNNNNNGG 8 cut(s) 103, 204, 1067, 1068, 1157, 2854, 3295, 3299
AflII CTTAAG 2 cut(s) 328, 1256
AflIII ACRYGT 1 cut(s) 2921
AjiI CACGTC 3 cut(s) 240, 466, 2380
AjnI CCWGG 4 cut(s) 511, 1030, 1244, 3402
AjuI GAANNNNNNNTTGG 6 cut(s) 554, 586, 636, 668, 2862, 2894
Alw21I GWGCWC 2 cut(s) 1444, 1504
Alw26I GTCTC 6 cut(s) 456, 730, 887, 2732, 2761, 2877
AlwI GGATC 5 cut(s) 691, 1198, 1304, 2426, 3160
AlwNI CAGNNNCTG 3 cut(s) 806, 1193, 1313
Aor13HI TCCGGA 2 cut(s) 460, 3332
AoxI GGCC 7 cut(s) 105, 260, 509, 1199, 1425, 2139, 2782
ApoI RAATTY 3 cut(s) 970, 1471, 2876
ArsI GACNNNNNNTTYG 4 cut(s) 734, 766, 2876, 2908
AseI ATTAAT 1 cut(s) 1803
Asp700I GAANNNNTTC 3 cut(s) 2049, 2578, 3126
AspLEI GCGC 1 cut(s) 1720
AspS9I GGNCC 8 cut(s) 18, 260, 1200, 1477, 1750, 2140, 3143, 3330
AsuC2I CCSGG 3 cut(s) 1573, 2426, 3111
AvaII GGWCC 5 cut(s) 18, 1477, 1750, 3143, 3330
BaeGI GKGCMC 2 cut(s) 146, 343
BalI TGGCCA 1 cut(s) 107
BanII GRGCYC 1 cut(s) 494
BarI GAAGNNNNNNTAC 2 cut(s) 1040, 1072
BbsI GAAGAC 5 cut(s) 150, 2581, 3057, 3143, 3180
Bbv12I GWGCWC 2 cut(s) 1444, 1504
BceAI ACGGC 4 cut(s) 139, 1511, 2378, 2625
BcgI CGANNNNNNTGC 4 cut(s) 1252, 1286, 2316, 2350
BciT130I CCWGG 4 cut(s) 513, 1032, 1246, 3404
BciVI GTATCC 2 cut(s) 2190, 3179
BclI TGATCA 3 cut(s) 234, 1465, 1995
BcnI CCSGG 3 cut(s) 1573, 2426, 3111
BcoDI GTCTC 6 cut(s) 456, 730, 887, 2732, 2761, 2877
BfaI CTAG 4 cut(s) 420, 1152, 1182, 1595
BfmI CTRYAG 7 cut(s) 113, 244, 397, 795, 1445, 3207, 3495
BfrI CTTAAG 2 cut(s) 328, 1256
BfuAI ACCTGC 1 cut(s) 640
BfuI GTATCC 2 cut(s) 2190, 3179
BmcAI AGTACT 1 cut(s) 832
Bme1390I CCNGG 7 cut(s) 513, 1032, 1246, 1573, 2426, 3111, 3404
Bme18I GGWCC 5 cut(s) 18, 1477, 1750, 3143, 3330
BmgBI CACGTC 3 cut(s) 240, 466, 2380
BmgT120I GGNCC 8 cut(s) 18, 260, 1200, 1477, 1750, 2140, 3143, 3330
BmiI GGNNCC 7 cut(s) 493, 1452, 2392, 3087, 3115, 3287, 3387
BmrFI CCNGG 7 cut(s) 513, 1032, 1246, 1573, 2426, 3111, 3404
BmrI ACTGGG 1 cut(s) 1077
BmuI ACTGGG 1 cut(s) 1077
BpiI GAAGAC 5 cut(s) 150, 2581, 3057, 3143, 3180
BpmI CTGGAG 5 cut(s) 147, 882, 2409, 3275, 3425
Bpu10I CCTNAGC 2 cut(s) 203, 2133
BpuEI CTTGAG 3 cut(s) 438, 2323, 2480
BpuMI CCSGG 3 cut(s) 1573, 2426, 3111
BsaAI YACGTR 1 cut(s) 1379
BsaBI GATNNNNATC 2 cut(s) 1314, 2179
BsaI GGTCTC 2 cut(s) 730, 2732
BsaJI CCNNGG 5 cut(s) 102, 2058, 2353, 3402, 3459
BsaWI WCCGGW 2 cut(s) 460, 3332
BsaXI ACNNNNNCTCC 4 cut(s) 256, 286, 2500, 2530
Bsc4I CCNNNNNNNGG 8 cut(s) 103, 204, 1067, 1068, 1157, 2854, 3295, 3299
Bse1I ACTGG 9 cut(s) 164, 899, 1072, 1564, 2471, 2804, 2832, 3145, 3308
Bse3DI GCAATG 1 cut(s) 3018
Bse8I GATNNNNATC 2 cut(s) 1314, 2179
BseAI TCCGGA 2 cut(s) 460, 3332
BseBI CCWGG 4 cut(s) 513, 1032, 1246, 3404
BseDI CCNNGG 5 cut(s) 102, 2058, 2353, 3402, 3459
BseGI GGATG 9 cut(s) 676, 1375, 1900, 2038, 2434, 2650, 3229, 3289, 3304
BseJI GATNNNNATC 2 cut(s) 1314, 2179
BseLI CCNNNNNNNGG 8 cut(s) 103, 204, 1067, 1068, 1157, 2854, 3295, 3299
BseMI GCAATG 1 cut(s) 3018
BseMII CTCAG 7 cut(s) 100, 1413, 2147, 2203, 2523, 2694, 3246
BseNI ACTGG 9 cut(s) 164, 899, 1072, 1564, 2471, 2804, 2832, 3145, 3308
BseRI GAGGAG 2 cut(s) 2508, 2573
BseSI GKGCMC 2 cut(s) 146, 343
BseYI CCCAGC 1 cut(s) 198
BsgI GTGCAG 4 cut(s) 864, 1305, 1575, 2994
Bsh1236I CGCG 1 cut(s) 337
BshFI GGCC 7 cut(s) 107, 262, 511, 1201, 1427, 2141, 2784
BsiHKAI GWGCWC 2 cut(s) 1444, 1504
BsiSI CCGG 5 cut(s) 461, 1572, 2425, 3111, 3333
BslFI GGGAC 2 cut(s) 370, 1184
BslI CCNNNNNNNGG 8 cut(s) 103, 204, 1067, 1068, 1157, 2854, 3295, 3299
BsmAI GTCTC 6 cut(s) 456, 730, 887, 2732, 2761, 2877
BsmFI GGGAC 2 cut(s) 370, 1184
BsmI GAATGC 2 cut(s) 1705, 2134
BsnI GGCC 7 cut(s) 107, 262, 511, 1201, 1427, 2141, 2784
Bso31I GGTCTC 2 cut(s) 730, 2732
Bsp1286I GDGCHC 5 cut(s) 146, 343, 494, 1444, 1504
Bsp13I TCCGGA 2 cut(s) 460, 3332
Bsp1407I TGTACA 2 cut(s) 2223, 3160
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 6 cut(s) 94, 335, 1062, 1198, 1849, 1899
BspANI GGCC 7 cut(s) 107, 262, 511, 1201, 1427, 2141, 2784
BspCNI CTCAG 7 cut(s) 99, 1414, 2146, 2202, 2524, 2695, 3245
BspEI TCCGGA 2 cut(s) 460, 3332
BspFNI CGCG 1 cut(s) 337
BspHI TCATGA 1 cut(s) 1411
BspLI GGNNCC 7 cut(s) 493, 1452, 2392, 3087, 3115, 3287, 3387
BspMAI CTGCAG 2 cut(s) 117, 1449
BspMI ACCTGC 1 cut(s) 640
BspPI GGATC 5 cut(s) 691, 1198, 1304, 2426, 3160
BspTI CTTAAG 2 cut(s) 328, 1256
BspTNI GGTCTC 2 cut(s) 730, 2732
BsrDI GCAATG 1 cut(s) 3018
BsrGI TGTACA 2 cut(s) 2223, 3160
BsrI ACTGG 9 cut(s) 164, 899, 1072, 1564, 2471, 2804, 2832, 3145, 3308
BssECI CCNNGG 5 cut(s) 102, 2058, 2353, 3402, 3459
BssT1I CCWWGG 4 cut(s) 102, 2058, 2353, 3459
Bst2UI CCWGG 4 cut(s) 513, 1032, 1246, 3404
Bst4CI ACNGT 7 cut(s) 248, 601, 1078, 1536, 2248, 2632, 3241
Bst6I CTCTTC 1 cut(s) 52
BstAFI CTTAAG 2 cut(s) 328, 1256
BstAPI GCANNNNNTGC 3 cut(s) 806, 878, 1499
BstAUI TGTACA 2 cut(s) 2223, 3160
BstBAI YACGTR 1 cut(s) 1379
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 9 cut(s) 676, 1375, 1900, 2038, 2434, 2650, 3229, 3289, 3304
BstFNI CGCG 1 cut(s) 337
BstHHI GCGC 1 cut(s) 1720
BstMAI GTCTC 6 cut(s) 456, 730, 887, 2732, 2761, 2877
BstNI CCWGG 4 cut(s) 513, 1032, 1246, 3404
BstNSI RCATGY 3 cut(s) 2256, 2337, 2925
BstSCI CCNGG 7 cut(s) 511, 1030, 1244, 1571, 2424, 3109, 3402
BstSFI CTRYAG 7 cut(s) 113, 244, 397, 795, 1445, 3207, 3495
BstSLI GKGCMC 2 cut(s) 146, 343
BstSNI TACGTA 1 cut(s) 1379
BstUI CGCG 1 cut(s) 337
BstV2I GAAGAC 5 cut(s) 150, 2581, 3057, 3143, 3180
BstX2I RGATCY 2 cut(s) 1190, 1309
BstXI CCANNNNNNTGG 1 cut(s) 1747
BstYI RGATCY 2 cut(s) 1190, 1309
BsuI GTATCC 2 cut(s) 2190, 3179
BsuRI GGCC 7 cut(s) 107, 262, 511, 1201, 1427, 2141, 2784
BtgI CCRYGG 1 cut(s) 102
BtrI CACGTC 3 cut(s) 240, 466, 2380
BtsCI GGATG 9 cut(s) 676, 1375, 1900, 2038, 2434, 2650, 3229, 3289, 3304
BtsI GCAGTG 1 cut(s) 122
BveI ACCTGC 1 cut(s) 640
CaiI CAGNNNCTG 3 cut(s) 806, 1193, 1313
CciI TCATGA 1 cut(s) 1411
CfoI GCGC 1 cut(s) 1720
Cfr13I GGNCC 8 cut(s) 18, 260, 1200, 1477, 1750, 2140, 3143, 3330
CseI GACGC 2 cut(s) 3363, 3419
Csp6I GTAC 6 cut(s) 831, 1057, 2224, 2829, 3016, 3161
CviQI GTAC 6 cut(s) 831, 1057, 2224, 2829, 3016, 3161
DraI TTTAAA 3 cut(s) 1636, 1819, 3318
DraIII CACNNNGTG 1 cut(s) 1499
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
EciI GGCGGA 1 cut(s) 83
Eco105I TACGTA 1 cut(s) 1379
Eco130I CCWWGG 4 cut(s) 102, 2058, 2353, 3459
Eco147I AGGCCT 3 cut(s) 511, 1427, 2784
Eco24I GRGCYC 1 cut(s) 494
Eco31I GGTCTC 2 cut(s) 730, 2732
Eco32I GATATC 2 cut(s) 2360, 3269
Eco47I GGWCC 5 cut(s) 18, 1477, 1750, 3143, 3330
Eco57I CTGAAG 5 cut(s) 63, 612, 678, 1871, 2477
EcoO109I RGGNCCY 1 cut(s) 18
EcoRII CCWGG 4 cut(s) 511, 1030, 1244, 3402
EcoRV GATATC 2 cut(s) 2360, 3269
EcoT14I CCWWGG 4 cut(s) 102, 2058, 2353, 3459
EcoT38I GRGCYC 1 cut(s) 494
ErhI CCWWGG 4 cut(s) 102, 2058, 2353, 3459
FaqI GGGAC 2 cut(s) 370, 1184
FauI CCCGC 1 cut(s) 1069
FauNDI CATATG 1 cut(s) 2587
FbaI TGATCA 3 cut(s) 234, 1465, 1995
FblI GTMKAC 2 cut(s) 903, 3454
FokI GGATG 9 cut(s) 683, 1382, 1907, 2045, 2441, 2637, 3236, 3276, 3311
FriOI GRGCYC 1 cut(s) 494
FspBI CTAG 4 cut(s) 420, 1152, 1182, 1595
GlaI GCGC 1 cut(s) 1719
GsaI CCCAGC 1 cut(s) 202
GsuI CTGGAG 5 cut(s) 147, 882, 2409, 3275, 3425
HaeIII GGCC 7 cut(s) 107, 262, 511, 1201, 1427, 2141, 2784
HapII CCGG 5 cut(s) 461, 1572, 2425, 3111, 3333
HgaI GACGC 2 cut(s) 3363, 3419
HhaI GCGC 1 cut(s) 1720
Hin6I GCGC 1 cut(s) 1718
HinP1I GCGC 1 cut(s) 1718
HincII GTYRAC 2 cut(s) 1986, 3455
HindII GTYRAC 2 cut(s) 1986, 3455
HindIII AAGCTT 5 cut(s) 677, 1812, 1937, 1949, 2433
HpaII CCGG 5 cut(s) 461, 1572, 2425, 3111, 3333
Hpy166II GTNNAC 5 cut(s) 904, 1986, 2226, 3229, 3455
Hpy8I GTNNAC 5 cut(s) 904, 1986, 2226, 3229, 3455
Hpy99I CGWCG 1 cut(s) 3357
HpyCH4III ACNGT 7 cut(s) 248, 601, 1078, 1536, 2248, 2632, 3241
HpyCH4IV ACGT 5 cut(s) 239, 304, 465, 1378, 2379
HpySE526I ACGT 5 cut(s) 239, 304, 465, 1378, 2379
HspAI GCGC 1 cut(s) 1718
Kpn2I TCCGGA 2 cut(s) 460, 3332
Ksp22I TGATCA 3 cut(s) 234, 1465, 1995
LmnI GCTCC 9 cut(s) 40, 277, 497, 869, 1456, 2060, 2263, 2390, 2560
MaeI CTAG 4 cut(s) 420, 1152, 1182, 1595
MaeII ACGT 5 cut(s) 239, 304, 465, 1378, 2379
MaeIII GTNAC 7 cut(s) 466, 984, 1096, 2707, 2839, 3235, 3274
MfeI CAATTG 1 cut(s) 2274
MflI RGATCY 2 cut(s) 1190, 1309
MhlI GDGCHC 5 cut(s) 146, 343, 494, 1444, 1504
MlsI TGGCCA 1 cut(s) 107
MluNI TGGCCA 1 cut(s) 107
MlyI GAGTC 8 cut(s) 84, 382, 889, 1243, 1587, 2321, 2797, 2971
MmeI TCCRAC 4 cut(s) 406, 634, 1728, 2222
Mox20I TGGCCA 1 cut(s) 107
MroI TCCGGA 2 cut(s) 460, 3332
MroXI GAANNNNTTC 3 cut(s) 2049, 2578, 3126
MscI TGGCCA 1 cut(s) 107
MslI CAYNNNNRTG 2 cut(s) 1917, 2481
Msp20I TGGCCA 1 cut(s) 107
MspA1I CMGCKG 3 cut(s) 977, 1054, 2729
MspCI CTTAAG 2 cut(s) 328, 1256
MspI CCGG 5 cut(s) 461, 1572, 2425, 3111, 3333
MspR9I CCNGG 7 cut(s) 513, 1032, 1246, 1573, 2426, 3111, 3404
MunI CAATTG 1 cut(s) 2274
Mva1269I GAATGC 2 cut(s) 1705, 2134
MvaI CCWGG 4 cut(s) 513, 1032, 1246, 3404
MvnI CGCG 1 cut(s) 337
NciI CCSGG 3 cut(s) 1573, 2426, 3111
NcoI CCATGG 1 cut(s) 102
NdeI CATATG 1 cut(s) 2587
NlaIV GGNNCC 7 cut(s) 493, 1452, 2392, 3087, 3115, 3287, 3387
NmuCI GTSAC 5 cut(s) 466, 984, 2707, 2839, 3274
NspI RCATGY 3 cut(s) 2256, 2337, 2925
PaeI GCATGC 2 cut(s) 2256, 2337
PagI TCATGA 1 cut(s) 1411
PceI AGGCCT 3 cut(s) 511, 1427, 2784
PciI ACATGT 1 cut(s) 2921
PctI GAATGC 2 cut(s) 1705, 2134
PdmI GAANNNNTTC 3 cut(s) 2049, 2578, 3126
PflMI CCANNNNNTGG 1 cut(s) 2854
PfoI TCCNGGA 1 cut(s) 1030
PleI GAGTC 8 cut(s) 84, 381, 889, 1243, 1586, 2320, 2797, 2970
PpsI GAGTC 8 cut(s) 84, 381, 889, 1243, 1586, 2320, 2797, 2970
Ppu21I YACGTR 1 cut(s) 1379
PpuMI RGGWCCY 1 cut(s) 18
PscI ACATGT 1 cut(s) 2921
PshBI ATTAAT 1 cut(s) 1803
Psp5II RGGWCCY 1 cut(s) 18
Psp6I CCWGG 4 cut(s) 511, 1030, 1244, 3402
PspFI CCCAGC 1 cut(s) 198
PspGI CCWGG 4 cut(s) 511, 1030, 1244, 3402
PspN4I GGNNCC 7 cut(s) 493, 1452, 2392, 3087, 3115, 3287, 3387
PspPI GGNCC 8 cut(s) 18, 260, 1200, 1477, 1750, 2140, 3143, 3330
PspPPI RGGWCCY 1 cut(s) 18
PsrI GAACNNNNNNTAC 2 cut(s) 2034, 2066
PstI CTGCAG 2 cut(s) 117, 1449
PstNI CAGNNNCTG 3 cut(s) 806, 1193, 1313
PsuI RGATCY 2 cut(s) 1190, 1309
PvuII CAGCTG 3 cut(s) 977, 1054, 2729
RsaI GTAC 6 cut(s) 832, 1058, 2225, 2830, 3017, 3162
RsaNI GTAC 6 cut(s) 831, 1057, 2224, 2829, 3016, 3161
RseI CAYNNNNRTG 2 cut(s) 1917, 2481
SalI GTCGAC 1 cut(s) 3453
Sau96I GGNCC 8 cut(s) 18, 260, 1200, 1477, 1750, 2140, 3143, 3330
ScaI AGTACT 1 cut(s) 832
SchI GAGTC 8 cut(s) 84, 382, 889, 1243, 1587, 2321, 2797, 2971
ScrFI CCNGG 7 cut(s) 513, 1032, 1246, 1573, 2426, 3111, 3404
SduI GDGCHC 5 cut(s) 146, 343, 494, 1444, 1504
SfcI CTRYAG 7 cut(s) 113, 244, 397, 795, 1445, 3207, 3495
SinI GGWCC 5 cut(s) 18, 1477, 1750, 3143, 3330
SmiMI CAYNNNNRTG 2 cut(s) 1917, 2481
SmlI CTYRAG 5 cut(s) 328, 453, 1256, 2338, 2495
SmoI CTYRAG 5 cut(s) 328, 453, 1256, 2338, 2495
SnaBI TACGTA 1 cut(s) 1379
SphI GCATGC 2 cut(s) 2256, 2337
SseBI AGGCCT 3 cut(s) 511, 1427, 2784
SsiI CCGC 6 cut(s) 94, 335, 1062, 1198, 1849, 1899
SspI AATATT 1 cut(s) 1649
SspMI CTAG 4 cut(s) 420, 1152, 1182, 1595
StuI AGGCCT 3 cut(s) 511, 1427, 2784
StyD4I CCNGG 7 cut(s) 511, 1030, 1244, 1571, 2424, 3109, 3402
StyI CCWWGG 4 cut(s) 102, 2058, 2353, 3459
TaaI ACNGT 7 cut(s) 248, 601, 1078, 1536, 2248, 2632, 3241
TaiI ACGT 5 cut(s) 242, 307, 468, 1381, 2382
TaqII GACCGA 1 cut(s) 2756
TatI WGTACW 4 cut(s) 830, 2223, 3015, 3160
TauI GCSGC 2 cut(s) 1201, 1901
TseFI GTSAC 5 cut(s) 466, 984, 2707, 2839, 3274
Tsp45I GTSAC 5 cut(s) 466, 984, 2707, 2839, 3274
TspGWI ACGGA 1 cut(s) 3457
Van91I CCANNNNNTGG 1 cut(s) 2854
Vha464I CTTAAG 2 cut(s) 328, 1256
VpaK11BI GGWCC 5 cut(s) 18, 1477, 1750, 3143, 3330
VspI ATTAAT 1 cut(s) 1803
XapI RAATTY 3 cut(s) 970, 1471, 2876
XbaI TCTAGA 1 cut(s) 419
XceI RCATGY 3 cut(s) 2256, 2337, 2925
XcmI CCANNNNNNNNNTGG 3 cut(s) 1242, 1647, 3296
XmiI GTMKAC 2 cut(s) 903, 3454
XmnI GAANNNNTTC 3 cut(s) 2049, 2578, 3126
XspI CTAG 4 cut(s) 420, 1152, 1182, 1595
ZrmI AGTACT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.