MD06G1230800.v1.1

Golgin candidate

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
36023517 .. 36028186
4670 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1230800.v1.1.491

Sequence Viewer

Length: 2049 bp
ATGGCGAACTGGATCTCCTCCAAGCTCAGAGCCGCCGAAACTATCCTCCAACAGATCGATCAGCAAGCTGCGGAGTCGCTGCGGAAGAACGAGAAGCAGATCGCCGACGAATTGAGCTTGGACACGCCGACGAGAGCGGGGGGCAGTGTGCCTTTGAAGGATCAGTTGAAGAAGAAAACCCTAGAAAATCAAATTAGTGATTATCGCGGAAAATTAACCAGTGATCCGAGCTTAAACATCGTTAGTAATAACATTAACGTTAATGATGATGGTAATAATAGTAATAGGGAGAGAGATATTGGTGGAGTTCTGAAACCTAGGAAGACTCTTACTGACGGTGACTGGACTCAACTCCTTAGTAGCACACCGAATCGGGGAGCTACTTCTGCTGCGAATCGCGGCAATGGTTTCCCCGGGGTTCGGGGTTTGAGGAAGGATGGTAGGAGGCCGGGGAGTGCCAGTTCCACTTCGGGTTTGTCGGTTTTGGAGGCTAAGAAGAATCAAAAGAGTGGCGGTAATAATGTTGTGAAGTCGGCGCGGAGGGCAAGTGTTGGGGAAGGAAGTAAGTTGAATGGGAAAGTGAGTGATGGGGGGGAGTCTGGCTATTCGGTTTCAAATTCACCGGAGAGGGCTTCAAGTGTTGAGTTGAAGAGTGATGGTAAGATTTTGGAAGGACGAGAGTTGGATTATAGAGATGTGGGATTGAACACTTTGGAGGAAACAAAAGATAAGGGAAATGAAGAAAATGGTGGGCGTTTTGATTCTAAGGAACTTTCTGCTGAGGTTTCTTTACAGTCGGTGAAGAAGGACGATGTGGGTTCTAATAAGAAGTTAGGAGGGGAGAATGTGGGTGATCGGTTGAGGAAGCATGAGTCTATTGAAGCGTCCAGAAGTTCTACCTCTGAGGATTTAAAGAGAGGTTTTACTTCGGTAAGTGATGGGAGCTCTGAGTCGGACACAGACACAGGTTCAAGTTCTGATTCTGAGAGTGAGCGTGAGAAGGAGGAAAGGAGAAAGAAGAGGGAGAGGATTCTGGCAGAGAAAGCAGCAGCTAAAGCTGTGGAGGCCATCAAAGAGAGGGAAAATATGGTTGCCAGATTGGAGGGTGAGAAGCAGAGCTTGGAAAAAATACTTGAAGAGCAAGTGAAGCAACAAGCACAAGAGGCTTCAAAGCTGCAAATGACTATGATGGAAACCATGGAAGCGGCTGATTTAGAAAAGCAGAAACATAATAACACTAGAATGGAAGCCTTTGCACGGTTGGCTAAACTGGAGACTTCAAATGCAGATCTTGCAAAATCCCTAGCCAATGTGCAATGGAATCTACAAGTAGAGGCTAATCAGGTAGCAGAACTCCGACAGCAAATTGAGTTAAAAGAAGTGAACCAGGAAGAGCTCAGGAGGAAGATCTCCGACACTCATCAAACAAAATTATCTCTAAAGAAAGTAGCAACGTCAAAAGGAATTGAACTTGAACGAGAAATTTTGGAGGCAGAGTATGCCTTTGTTACCGATAAAATTGTGCGATTGCAAGATAAGGCACAGAAGCTGGAAGCAAACATTGAAATGACAAGGAAAGAGATAGAGGATCCAACAGAAGTAGAAATTGAGCTCAAGCGAAGGCTTGCTCAGATGACTGACCATTTGATTCATAAACAAGCCCAGGTTGAGGCTCTCTCCTCCGAGAAGGCAACTCTTCTGTTCAGAATTGAGGCTGTCTCGAGGTCACTAGACGAAAGCAAGTCATTGACCGAATTTTCCGCTGCCTCGTCAAGGGACATAGAATCGGGCAGGCCTTTATTCGAGGACAGAATCCGGTCAGGCGGGAAGCACCTGGGTTCAGCACTTCAGCAATTGGAGTCTATATTCTTGGCCGGAGTAGTGTTTTTGAGGAGGAATCCGACCGCGAAAATATGGGCCGCGATTTACTTCGTGTGCCTTCATTTGTGGGTTATTTACATTCTAATGTCCCGTTCTCAGGCTTCAGATGAGATGAAATCCGGGGCTGTCATATCCTTGGAAAACATTAACAACACTGCTAGTGTATAA

Protein Analysis

683

Amino Acids

75.44

Weight (kDa)

6.53

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Golgin_A5 PF09787 374 - 656 7.6e-14 Golgin subfamily A member 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 137
AccII CGCG 5 cut(s) 207, 399, 538, 1907, 1922
AclI AACGTT 1 cut(s) 258
AclWI GGATC 5 cut(s) 20, 168, 218, 1583, 1596
AcoI YGGCCR 1 cut(s) 1872
AcsI RAATTY 3 cut(s) 616, 1482, 1754
AcuI CTGAAG 2 cut(s) 1832, 1968
AfiI CCNNNNNNNGG 6 cut(s) 374, 420, 1257, 1669, 1773, 1978
AjnI CCWGG 3 cut(s) 1386, 1662, 1833
AjuI GAANNNNNNNTTGG 2 cut(s) 1103, 1135
AloI GAACNNNNNNTCC 3 cut(s) 31, 445, 477
Alw21I GWGCWC 3 cut(s) 947, 1398, 1614
Alw26I GTCTC 2 cut(s) 1268, 1723
AlwI GGATC 5 cut(s) 20, 168, 218, 1583, 1596
AlwNI CAGNNNCTG 1 cut(s) 1549
Ama87I CYCGRG 2 cut(s) 413, 1720
AoxI GGCC 5 cut(s) 446, 1065, 1793, 1872, 1917
ApeKI GCWGC 7 cut(s) 68, 79, 389, 1046, 1049, 1174, 1763
ApoI RAATTY 3 cut(s) 616, 1482, 1754
ArsI GACNNNNNNTTYG 2 cut(s) 1627, 1659
AspA2I CCTAGG 1 cut(s) 317
AspLEI GCGC 1 cut(s) 538
AspS9I GGNCC 1 cut(s) 1917
AsuC2I CCSGG 4 cut(s) 414, 415, 450, 2002
AsuHPI GGTGA 5 cut(s) 350, 612, 811, 863, 1118
AvaI CYCGRG 2 cut(s) 413, 1720
AvrII CCTAGG 1 cut(s) 317
BamHI GGATCC 1 cut(s) 1588
BanII GRGCYC 3 cut(s) 947, 1398, 1614
BbsI GAAGAC 1 cut(s) 329
Bbv12I GWGCWC 3 cut(s) 947, 1398, 1614
BbvCI CCTCAGC 1 cut(s) 780
BbvI GCAGC 7 cut(s) 55, 66, 376, 1058, 1061, 1161, 1750
BccI CCATC 7 cut(s) 263, 431, 581, 650, 932, 1076, 1183
BciT130I CCWGG 3 cut(s) 1388, 1664, 1835
BcnI CCSGG 4 cut(s) 414, 415, 450, 2002
BcoDI GTCTC 2 cut(s) 1268, 1723
BfaI CTAG 6 cut(s) 182, 318, 1239, 1304, 1730, 2040
BglII AGATCT 2 cut(s) 1288, 1407
BlnI CCTAGG 1 cut(s) 317
Bme1390I CCNGG 7 cut(s) 414, 415, 450, 1388, 1664, 1835, 2002
BmeT110I CYCGRG 2 cut(s) 413, 1720
BmgT120I GGNCC 1 cut(s) 1917
BmiI GGNNCC 1 cut(s) 1590
BmrFI CCNGG 7 cut(s) 414, 415, 450, 1388, 1664, 1835, 2002
BpiI GAAGAC 1 cut(s) 329
BplI GAGNNNNNCTC 4 cut(s) 1661, 1693, 1703, 1735
BpmI CTGGAG 1 cut(s) 1292
Bpu10I CCTNAGC 2 cut(s) 780, 1397
BpuEI CTTGAG 1 cut(s) 1598
BpuMI CCSGG 4 cut(s) 414, 415, 450, 2002
Bsa29I ATCGAT 1 cut(s) 57
BsaWI WCCGGW 2 cut(s) 622, 1815
BsaXI ACNNNNNCTCC 7 cut(s) 29, 445, 475, 532, 562, 1481, 1511
Bsc4I CCNNNNNNNGG 6 cut(s) 374, 420, 1257, 1669, 1773, 1978
Bse1I ACTGG 5 cut(s) 14, 219, 347, 459, 1275
Bse3DI GCAATG 2 cut(s) 409, 1322
BseBI CCWGG 3 cut(s) 1388, 1664, 1835
BseCI ATCGAT 1 cut(s) 57
BseGI GGATG 1 cut(s) 442
BseLI CCNNNNNNNGG 6 cut(s) 374, 420, 1257, 1669, 1773, 1978
BseMI GCAATG 2 cut(s) 409, 1322
BseMII CTCAG 8 cut(s) 40, 771, 894, 939, 975, 1411, 1643, 1991
BseNI ACTGG 5 cut(s) 14, 219, 347, 459, 1275
BseRI GAGGAG 3 cut(s) 7, 1669, 1906
BseXI GCAGC 7 cut(s) 55, 66, 376, 1058, 1061, 1161, 1750
Bsh1236I CGCG 5 cut(s) 207, 399, 538, 1907, 1922
Bsh1285I CGRYCG 1 cut(s) 1905
BshFI GGCC 5 cut(s) 448, 1067, 1795, 1874, 1919
BshVI ATCGAT 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 1905
BsiHKAI GWGCWC 3 cut(s) 947, 1398, 1614
BsiHKCI CYCGRG 2 cut(s) 413, 1720
BsiSI CCGG 6 cut(s) 414, 449, 623, 1816, 1875, 2001
BslFI GGGAC 2 cut(s) 1790, 1954
BslI CCNNNNNNNGG 6 cut(s) 374, 420, 1257, 1669, 1773, 1978
BsmAI GTCTC 2 cut(s) 1268, 1723
BsmFI GGGAC 2 cut(s) 1790, 1954
BsnI GGCC 5 cut(s) 448, 1067, 1795, 1874, 1919
BsoBI CYCGRG 2 cut(s) 413, 1720
Bsp1286I GDGCHC 3 cut(s) 947, 1398, 1614
Bsp19I CCATGG 1 cut(s) 1197
BspANI GGCC 5 cut(s) 448, 1067, 1795, 1874, 1919
BspCNI CTCAG 8 cut(s) 39, 772, 895, 940, 976, 1410, 1642, 1990
BspDI ATCGAT 1 cut(s) 57
BspFNI CGCG 5 cut(s) 207, 399, 538, 1907, 1922
BspLI GGNNCC 1 cut(s) 1590
BspPI GGATC 5 cut(s) 20, 168, 218, 1583, 1596
BspQI GCTCTTC 2 cut(s) 1131, 1386
BsrBI CCGCTC 1 cut(s) 137
BsrDI GCAATG 2 cut(s) 409, 1322
BsrI ACTGG 5 cut(s) 14, 219, 347, 459, 1275
BssT1I CCWWGG 3 cut(s) 317, 1197, 2016
Bst2UI CCWGG 3 cut(s) 1388, 1664, 1835
Bst4CI ACNGT 3 cut(s) 338, 795, 1260
Bst6I CTCTTC 5 cut(s) 644, 1013, 1131, 1386, 1701
BstAPI GCANNNNNTGC 2 cut(s) 1292, 1499
BstC8I GCNNGC 3 cut(s) 66, 1626, 1793
BstDSI CCRYGG 1 cut(s) 1197
BstENI CCTNNNNNAGG 1 cut(s) 1771
BstF5I GGATG 1 cut(s) 442
BstFNI CGCG 5 cut(s) 207, 399, 538, 1907, 1922
BstHHI GCGC 1 cut(s) 538
BstMAI GTCTC 2 cut(s) 1268, 1723
BstMCI CGRYCG 1 cut(s) 1905
BstNI CCWGG 3 cut(s) 1388, 1664, 1835
BstSCI CCNGG 7 cut(s) 412, 413, 448, 1386, 1662, 1833, 2000
BstUI CGCG 5 cut(s) 207, 399, 538, 1907, 1922
BstV1I GCAGC 7 cut(s) 55, 66, 376, 1058, 1061, 1161, 1750
BstV2I GAAGAC 1 cut(s) 329
BstX2I RGATCY 4 cut(s) 12, 1288, 1407, 1588
BstYI RGATCY 4 cut(s) 12, 1288, 1407, 1588
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 5 cut(s) 448, 1067, 1795, 1874, 1919
BsuTUI ATCGAT 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 1197
BtsCI GGATG 1 cut(s) 442
BtsI GCAGTG 2 cut(s) 151, 2034
BtsIMutI CAGTG 3 cut(s) 151, 226, 2034
Cac8I GCNNGC 3 cut(s) 66, 1626, 1793
CaiI CAGNNNCTG 1 cut(s) 1549
CfoI GCGC 1 cut(s) 538
Cfr13I GGNCC 1 cut(s) 1917
Cfr9I CCCGGG 1 cut(s) 413
ClaI ATCGAT 1 cut(s) 57
CseI GACGC 1 cut(s) 873
CviAII CATG 2 cut(s) 869, 1198
DraI TTTAAA 1 cut(s) 912
EaeI YGGCCR 1 cut(s) 1872
Eam1104I CTCTTC 5 cut(s) 644, 1013, 1131, 1386, 1701
EarI CTCTTC 5 cut(s) 644, 1013, 1131, 1386, 1701
Ecl136II GAGCTC 3 cut(s) 945, 1396, 1612
Eco130I CCWWGG 3 cut(s) 317, 1197, 2016
Eco147I AGGCCT 1 cut(s) 1795
Eco24I GRGCYC 3 cut(s) 947, 1398, 1614
Eco53kI GAGCTC 3 cut(s) 945, 1396, 1612
Eco57I CTGAAG 2 cut(s) 1832, 1968
Eco88I CYCGRG 2 cut(s) 413, 1720
EcoICRI GAGCTC 3 cut(s) 945, 1396, 1612
EcoNI CCTNNNNNAGG 1 cut(s) 1771
EcoRII CCWGG 3 cut(s) 1386, 1662, 1833
EcoT14I CCWWGG 3 cut(s) 317, 1197, 2016
EcoT38I GRGCYC 3 cut(s) 947, 1398, 1614
ErhI CCWWGG 3 cut(s) 317, 1197, 2016
FaeI CATG 2 cut(s) 872, 1201
FalI AAGNNNNNCTT 2 cut(s) 1103, 1135
FaqI GGGAC 2 cut(s) 1790, 1954
FatI CATG 2 cut(s) 868, 1197
FauI CCCGC 2 cut(s) 130, 1817
FokI GGATG 1 cut(s) 449
FriOI GRGCYC 3 cut(s) 947, 1398, 1614
FspBI CTAG 6 cut(s) 182, 318, 1239, 1304, 1730, 2040
GlaI GCGC 1 cut(s) 537
GsuI CTGGAG 1 cut(s) 1292
HaeIII GGCC 5 cut(s) 448, 1067, 1795, 1874, 1919
HapII CCGG 6 cut(s) 414, 449, 623, 1816, 1875, 2001
HgaI GACGC 1 cut(s) 873
HhaI GCGC 1 cut(s) 538
Hin1II CATG 2 cut(s) 872, 1201
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HpaII CCGG 6 cut(s) 414, 449, 623, 1816, 1875, 2001
HphI GGTGA 5 cut(s) 350, 612, 811, 863, 1118
Hpy166II GTNNAC 1 cut(s) 1384
Hpy188III TCNNGA 3 cut(s) 888, 1399, 1720
Hpy8I GTNNAC 1 cut(s) 1384
Hpy99I CGWCG 2 cut(s) 110, 133
HpyAV CCTTC 9 cut(s) 151, 427, 551, 665, 799, 994, 1614, 1681, 1949
HpyCH4III ACNGT 3 cut(s) 338, 795, 1260
HpyCH4IV ACGT 2 cut(s) 258, 1454
HpyCH4V TGCA 6 cut(s) 1177, 1256, 1286, 1295, 1315, 1531
HpySE526I ACGT 2 cut(s) 258, 1454
Hsp92II CATG 2 cut(s) 872, 1201
HspAI GCGC 1 cut(s) 536
LguI GCTCTTC 2 cut(s) 1131, 1386
LmnI GCTCC 2 cut(s) 377, 942
Lsp1109I GCAGC 7 cut(s) 55, 66, 376, 1058, 1061, 1161, 1750
MaeI CTAG 6 cut(s) 182, 318, 1239, 1304, 1730, 2040
MaeII ACGT 2 cut(s) 258, 1454
MaeIII GTNAC 3 cut(s) 338, 1507, 1725
MbiI CCGCTC 1 cut(s) 137
MfeI CAATTG 1 cut(s) 1853
MflI RGATCY 4 cut(s) 12, 1288, 1407, 1588
MhlI GDGCHC 3 cut(s) 947, 1398, 1614
MlyI GAGTC 7 cut(s) 83, 319, 340, 605, 881, 959, 1868
MmeI TCCRAC 7 cut(s) 73, 663, 933, 1381, 1437, 1616, 1925
MseI TTAA 7 cut(s) 215, 233, 255, 261, 911, 1373, 2028
MslI CAYNNNNRTG 3 cut(s) 1241, 1565, 1964
MspA1I CMGCKG 1 cut(s) 1763
MspI CCGG 6 cut(s) 414, 449, 623, 1816, 1875, 2001
MspR9I CCNGG 7 cut(s) 414, 415, 450, 1388, 1664, 1835, 2002
MunI CAATTG 1 cut(s) 1853
MvaI CCWGG 3 cut(s) 1388, 1664, 1835
MvnI CGCG 5 cut(s) 207, 399, 538, 1907, 1922
NciI CCSGG 4 cut(s) 414, 415, 450, 2002
NcoI CCATGG 1 cut(s) 1197
NlaIII CATG 2 cut(s) 872, 1201
NlaIV GGNNCC 1 cut(s) 1590
NmuCI GTSAC 2 cut(s) 338, 1725
PaeR7I CTCGAG 1 cut(s) 1720
PceI AGGCCT 1 cut(s) 1795
PciSI GCTCTTC 2 cut(s) 1131, 1386
PleI GAGTC 7 cut(s) 82, 319, 340, 604, 880, 958, 1867
PpsI GAGTC 7 cut(s) 82, 319, 340, 604, 880, 958, 1867
Psp124BI GAGCTC 3 cut(s) 947, 1398, 1614
Psp1406I AACGTT 1 cut(s) 258
Psp6I CCWGG 3 cut(s) 1386, 1662, 1833
PspGI CCWGG 3 cut(s) 1386, 1662, 1833
PspN4I GGNNCC 1 cut(s) 1590
PspPI GGNCC 1 cut(s) 1917
PstNI CAGNNNCTG 1 cut(s) 1549
PsuI RGATCY 4 cut(s) 12, 1288, 1407, 1588
RseI CAYNNNNRTG 3 cut(s) 1241, 1565, 1964
SacI GAGCTC 3 cut(s) 947, 1398, 1614
SapI GCTCTTC 2 cut(s) 1131, 1386
SaqAI TTAA 7 cut(s) 215, 233, 255, 261, 911, 1373, 2028
Sau96I GGNCC 1 cut(s) 1917
SchI GAGTC 7 cut(s) 83, 319, 340, 605, 881, 959, 1868
ScrFI CCNGG 7 cut(s) 414, 415, 450, 1388, 1664, 1835, 2002
SduI GDGCHC 3 cut(s) 947, 1398, 1614
Sfr274I CTCGAG 1 cut(s) 1720
SlaI CTCGAG 1 cut(s) 1720
SmaI CCCGGG 1 cut(s) 415
SmiMI CAYNNNNRTG 3 cut(s) 1241, 1565, 1964
SmlI CTYRAG 2 cut(s) 1613, 1720
SmoI CTYRAG 2 cut(s) 1613, 1720
SseBI AGGCCT 1 cut(s) 1795
SspMI CTAG 6 cut(s) 182, 318, 1239, 1304, 1730, 2040
SstI GAGCTC 3 cut(s) 947, 1398, 1614
StuI AGGCCT 1 cut(s) 1795
StyD4I CCNGG 7 cut(s) 412, 413, 448, 1386, 1662, 1833, 2000
StyI CCWWGG 3 cut(s) 317, 1197, 2016
TaaI ACNGT 3 cut(s) 338, 795, 1260
TaiI ACGT 2 cut(s) 261, 1457
TaqI TCGA 3 cut(s) 57, 1721, 1803
TaqII GACCGA 1 cut(s) 1766
TauI GCSGC 4 cut(s) 35, 402, 1208, 1922
Tru1I TTAA 7 cut(s) 215, 233, 255, 261, 911, 1373, 2028
Tru9I TTAA 7 cut(s) 215, 233, 255, 261, 911, 1373, 2028
TscAI CASTG 3 cut(s) 151, 226, 2041
TseFI GTSAC 2 cut(s) 338, 1725
TseI GCWGC 7 cut(s) 68, 79, 389, 1046, 1049, 1174, 1763
Tsp45I GTSAC 2 cut(s) 338, 1725
TspDTI ATGAA 4 cut(s) 753, 1640, 1931, 2009
TspMI CCCGGG 1 cut(s) 413
TspRI CASTG 3 cut(s) 151, 226, 2041
XagI CCTNNNNNAGG 1 cut(s) 1771
XapI RAATTY 3 cut(s) 616, 1482, 1754
XhoI CTCGAG 1 cut(s) 1720
XmaI CCCGGG 1 cut(s) 413
XmaJI CCTAGG 1 cut(s) 317
XspI CTAG 6 cut(s) 182, 318, 1239, 1304, 1730, 2040
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.