Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007396

Physical Location & Seq

Genomic Coordinates Forward (+)

43095587 .. 43098945

Gene Structure 3359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013860

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCGTATTTCCAGAACGATGACCTGGAAAGCACAGCAATGCTCAAGCTCCTCCTCCACAACTTCCACCGTCTCAGCCTCCCCACTTCCCCCCAAATTCCGATGCGTCAGATTGCCCCTAACTTGCATCAGATCTTCCCCAACTTGGCCGTCTCCTTCTCCCTCATCTCCGGCTCTCTCCACGGCGCCGTCACCTCCACCATCACTCAAGTCGCTGTCACCGCCGTCACCATCGCCTCCACTAAAAGTGATGGTAAGGTTGTGGAAGTAGGGGAGTTGGATTATAGAGATGTGGGAGCGGACACTTCAGTTGAAATAAAAGGTAAGGCAAATGAAGAAAAGGGCGGAGCTTTTGATACGAAGGAGCTTTCTTTAGAGTCAGTAAAGAAAAATGAAGGGTTGTCTGACAAGAAGATTGGAGGGGAGAGTATGAGCAATCAGTTGAGAAATAGTACTGTCAGGGGCAAGCATGAGTCCAGTGAAGCTGCTAGGAGTTCTACCTCCGAAGACTTACAGAGAGGTTTTACTTCAGTAACTGATGGCAGCTCTGAGTCTGACTCGCACTCCGGTTCAAGTTCTGATTCTGAAAGTGAGCGTGAGAAGGAGGAAAGGAGAAAGCAGAGGGAGAAGATTCTAGCTGAGAAAGCAGCAGCTAAAGCTGTGGAGGCCATTAAAGAGAAGGAAAATACGGTTGCCAGATTGGAAGGGGAGAAGCAGAGCTTGGAGAAAATACGTGAAGCTTCAAAGCTACAAACGACTATGATGCAAACCATGGAAGCGGCTGATAAAGAGAAGCAGAAACATAATAGTACTAGAATGGAAGCCTTTGTGCATTTGGCTAAACTTGAGGTCAATCATGTAGCAGAACTTCGACAGCAAGTTGAGTTAAAAGAAGTTAACCATGAAGAACTCAGGAGGAAGATCTCTGATACTCATCAGATCAAAATATCTTTAAAGAGTGATACATCGGCTTTGGAAGGTGAAATCGGTCCCAATCTGTGGGTTCAGCACTCAGAAAAGGGGTTAGCAATGCCTCCAGTTGCTGGACGTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000301 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0006810 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0031090 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234 GO:0071840 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Golgin_A5

Protein Analysis

352

Amino Acids

38.65

Weight (kDa)

6.11

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18190
fragaria_vesca	FvH4_5g17221 FvH4_5g17221 FvH4_5g17221 FvH4_5g17221 FvH4_5g17221
malus_domestica	MD06G1230800.v1.1 MD14G1235400.v1.1
prunus_persica	Prupe.5G232100_v2.0.a1 Prupe.7G033500_v2.0.a1
pyrus_communis	pycom06g20200
rosa_chinensis	RchiOBHm_Chr7g0178571
rosa_laevigata	RLG00000005436 RLG00000013860
rosa_multiflora	Rmu_co8125946.1_g000001 Rmu_sc0012505.1_g000003 Rmu_sc0021447.1_g000002
rosa_roxburghii	Rroxscaffold_3G00274800
rosa_rugosa	Rorug06G0418000
rosa_samantha	Rh5AG530000 Rh7AG016700 Rh7BG016200 Rh7CG016900 Rh7DG016800
rosa_wichuraiana	Rw7G001330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1051
AccB1I	GGYRCC	1 cut(s)	185
AccB7I	CCANNNNNTGG	2 cut(s)	999, 1043
AccBSI	CCGCTC	1 cut(s)	299
AciI	CCGC	4 cut(s)	222, 299, 345, 779
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	96
AcuI	CTGAAG	2 cut(s)	291, 513
AcyI	GRCGYC	2 cut(s)	186, 1048
AfaI	GTAC	2 cut(s)	454, 811
AfiI	CCNNNNNNNGG	3 cut(s)	145, 999, 1043
AgsI	TTSAA	3 cut(s)	314, 573, 744
AjnI	CCWGG	1 cut(s)	24
AjuI	GAANNNNNNNTTGG	2 cut(s)	704, 736
Alw26I	GTCTC	2 cut(s)	77, 157
AlwNI	CAGNNNCTG	2 cut(s)	536, 1043
AoxI	GGCC	2 cut(s)	147, 666
ApeKI	GCWGC	4 cut(s)	485, 543, 647, 650
ApoI	RAATTY	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	989
AsuHPI	GGTGA	4 cut(s)	184, 211, 220, 992
AvaII	GGWCC	1 cut(s)	989
BanI	GGYRCC	1 cut(s)	185
BarI	GAAGNNNNNNTAC	2 cut(s)	852, 884
BbsI	GAAGAC	1 cut(s)	513
BbvI	GCAGC	4 cut(s)	472, 555, 659, 662
BccI	CCATC	4 cut(s)	209, 239, 245, 533
BceAI	ACGGC	4 cut(s)	134, 173, 199, 209
BcgI	CGANNNNNNTGC	2 cut(s)	745, 779
BciT130I	CCWGG	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	77, 157
BfaI	CTAG	3 cut(s)	489, 635, 813
BfoI	RGCGCY	1 cut(s)	189
BglII	AGATCT	2 cut(s)	132, 921
BisI	GCNGC	5 cut(s)	486, 544, 648, 651, 780
BlsI	GCNGC	5 cut(s)	487, 545, 649, 652, 781
BmcAI	AGTACT	2 cut(s)	454, 811
Bme1390I	CCNGG	1 cut(s)	26
Bme18I	GGWCC	1 cut(s)	989
BmgT120I	GGNCC	1 cut(s)	989
BmiI	GGNNCC	2 cut(s)	187, 991
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	3 cut(s)	93, 136, 753
BpiI	GAAGAC	1 cut(s)	513
BplI	GAGNNNNNCTC	2 cut(s)	542, 574
BpmI	CTGGAG	1 cut(s)	1020
BpuEI	CTTGAG	3 cut(s)	29, 192, 866
BsaAI	YACGTR	1 cut(s)	734
BsaBI	GATNNNNATC	1 cut(s)	933
BsaHI	GRCGYC	2 cut(s)	186, 1048
BsaJI	CCNNGG	2 cut(s)	181, 771
BsaWI	WCCGGW	1 cut(s)	566
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	3 cut(s)	145, 999, 1043
Bse1I	ACTGG	2 cut(s)	477, 1037
Bse3DI	GCAATG	2 cut(s)	45, 1035
Bse8I	GATNNNNATC	1 cut(s)	933
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	2 cut(s)	181, 771
BseJI	GATNNNNATC	1 cut(s)	933
BseLI	CCNNNNNNNGG	3 cut(s)	145, 999, 1043
BseMI	GCAATG	2 cut(s)	45, 1035
BseMII	CTCAG	5 cut(s)	88, 540, 630, 925, 1026
BseNI	ACTGG	2 cut(s)	477, 1037
BseRI	GAGGAG	2 cut(s)	41, 44
BseXI	GCAGC	4 cut(s)	472, 555, 659, 662
BshFI	GGCC	2 cut(s)	149, 668
BshNI	GGYRCC	1 cut(s)	185
BsiSI	CCGG	2 cut(s)	171, 567
BslFI	GGGAC	1 cut(s)	975
BslI	CCNNNNNNNGG	3 cut(s)	145, 999, 1043
BsmAI	GTCTC	2 cut(s)	77, 157
BsmBI	CGTCTC	2 cut(s)	77, 157
BsmFI	GGGAC	1 cut(s)	975
BsnI	GGCC	2 cut(s)	149, 668
Bsp143I	GATC	3 cut(s)	132, 921, 939
Bsp19I	CCATGG	1 cut(s)	771
BspACI	CCGC	4 cut(s)	222, 299, 345, 779
BspANI	GGCC	2 cut(s)	149, 668
BspCNI	CTCAG	5 cut(s)	87, 541, 631, 924, 1025
BspLI	GGNNCC	2 cut(s)	187, 991
BspT107I	GGYRCC	1 cut(s)	185
BsrBI	CCGCTC	1 cut(s)	299
BsrDI	GCAATG	2 cut(s)	45, 1035
BsrI	ACTGG	2 cut(s)	477, 1037
BssECI	CCNNGG	2 cut(s)	181, 771
BssMI	GATC	3 cut(s)	132, 921, 939
BssNI	GRCGYC	2 cut(s)	186, 1048
BssT1I	CCWWGG	1 cut(s)	771
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	3 cut(s)	71, 457, 691
BstACI	GRCGYC	2 cut(s)	186, 1048
BstBAI	YACGTR	1 cut(s)	734
BstC8I	GCNNGC	1 cut(s)	467
BstDEI	CTNAG	5 cut(s)	74, 549, 639, 911, 1012
BstDSI	CCRYGG	2 cut(s)	181, 771
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	3 cut(s)	135, 924, 942
BstMAI	GTCTC	2 cut(s)	77, 157
BstMBI	GATC	3 cut(s)	132, 921, 939
BstMWI	GCNNNNNNNGC	4 cut(s)	221, 644, 656, 665
BstNI	CCWGG	1 cut(s)	26
BstSCI	CCNGG	1 cut(s)	24
BstV1I	GCAGC	4 cut(s)	472, 555, 659, 662
BstV2I	GAAGAC	1 cut(s)	513
BstX2I	RGATCY	2 cut(s)	132, 921
BstYI	RGATCY	2 cut(s)	132, 921
BsuRI	GGCC	2 cut(s)	149, 668
BtgI	CCRYGG	2 cut(s)	181, 771
BtgZI	GCGATG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	467
CaiI	CAGNNNCTG	2 cut(s)	536, 1043
CfoI	GCGC	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	989
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	2 cut(s)	453, 810
CviAII	CATG	4 cut(s)	470, 772, 857, 902
CviQI	GTAC	2 cut(s)	453, 810
DdeI	CTNAG	5 cut(s)	74, 549, 639, 911, 1012
DinI	GGCGCC	1 cut(s)	187
DpnI	GATC	3 cut(s)	134, 923, 941
DpnII	GATC	3 cut(s)	132, 921, 939
DraI	TTTAAA	1 cut(s)	954
EaeI	YGGCCR	1 cut(s)	147
EciI	GGCGGA	1 cut(s)	360
Eco130I	CCWWGG	1 cut(s)	771
Eco47I	GGWCC	1 cut(s)	989
Eco57I	CTGAAG	2 cut(s)	291, 513
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	771
EgeI	GGCGCC	1 cut(s)	187
EheI	GGCGCC	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	771
Esp3I	CGTCTC	2 cut(s)	77, 157
FaeI	CATG	4 cut(s)	473, 775, 860, 905
FaiI	YATR	8 cut(s)	285, 431, 471, 761, 773, 804, 858, 903
FalI	AAGNNNNNCTT	2 cut(s)	704, 736
FaqI	GGGAC	1 cut(s)	975
FatI	CATG	4 cut(s)	469, 771, 856, 901
Fnu4HI	GCNGC	5 cut(s)	486, 544, 648, 651, 780
Fsp4HI	GCNGC	5 cut(s)	486, 544, 648, 651, 780
FspBI	CTAG	3 cut(s)	489, 635, 813
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	5 cut(s)	486, 544, 648, 651, 780
GsuI	CTGGAG	1 cut(s)	1020
HaeII	RGCGCY	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	149, 668
HapII	CCGG	2 cut(s)	171, 567
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	188
Hin1I	GRCGYC	2 cut(s)	186, 1048
Hin1II	CATG	4 cut(s)	473, 775, 860, 905
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	898
HindII	GTYRAC	1 cut(s)	898
HindIII	AAGCTT	1 cut(s)	738
HinfI	GANTC	6 cut(s)	377, 473, 551, 557, 581, 631
HpaI	GTTAAC	1 cut(s)	898
HpaII	CCGG	2 cut(s)	171, 567
HphI	GGTGA	4 cut(s)	184, 211, 220, 992
Hpy166II	GTNNAC	1 cut(s)	898
Hpy188III	TCNNGA	2 cut(s)	13, 913
Hpy8I	GTNNAC	1 cut(s)	898
HpyAV	CCTTC	7 cut(s)	166, 355, 389, 595, 673, 698, 971
HpyCH4III	ACNGT	3 cut(s)	71, 457, 691
HpyCH4IV	ACGT	2 cut(s)	733, 1048
HpyCH4V	TGCA	3 cut(s)	127, 766, 832
HpyF10VI	GCNNNNNNNGC	4 cut(s)	221, 644, 656, 665
HpyF3I	CTNAG	5 cut(s)	74, 549, 639, 911, 1012
HpySE526I	ACGT	2 cut(s)	733, 1048
Hsp92I	GRCGYC	2 cut(s)	186, 1048
Hsp92II	CATG	4 cut(s)	473, 775, 860, 905
HspAI	GCGC	1 cut(s)	186
KasI	GGCGCC	1 cut(s)	185
KspAI	GTTAAC	1 cut(s)	898
Kzo9I	GATC	3 cut(s)	132, 921, 939
LmnI	GCTCC	4 cut(s)	54, 296, 347, 364
Lsp1109I	GCAGC	4 cut(s)	472, 555, 659, 662
LweI	GCATC	3 cut(s)	93, 136, 753
MaeI	CTAG	3 cut(s)	489, 635, 813
MaeII	ACGT	2 cut(s)	733, 1048
MaeIII	GTNAC	4 cut(s)	190, 217, 226, 532
MalI	GATC	3 cut(s)	134, 923, 941
MbiI	CCGCTC	1 cut(s)	299
MboI	GATC	3 cut(s)	132, 921, 939
MboII	GAAGA	7 cut(s)	127, 347, 424, 518, 640, 917, 931
MflI	RGATCY	2 cut(s)	132, 921
MluCI	AATT	1 cut(s)	96
Mly113I	GGCGCC	1 cut(s)	186
MlyI	GAGTC	4 cut(s)	386, 482, 551, 560
MmeI	TCCRAC	1 cut(s)	258
MseI	TTAA	4 cut(s)	672, 887, 897, 953
MslI	CAYNNNNRTG	1 cut(s)	38
MspI	CCGG	2 cut(s)	171, 567
MspR9I	CCNGG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	4 cut(s)	221, 644, 656, 665
NarI	GGCGCC	1 cut(s)	186
NcoI	CCATGG	1 cut(s)	771
NdeII	GATC	3 cut(s)	132, 921, 939
NlaIII	CATG	4 cut(s)	473, 775, 860, 905
NlaIV	GGNNCC	2 cut(s)	187, 991
NmuCI	GTSAC	3 cut(s)	190, 217, 226
PfeI	GAWTC	2 cut(s)	581, 631
PflMI	CCANNNNNTGG	2 cut(s)	999, 1043
PkrI	GCNGC	5 cut(s)	487, 545, 649, 652, 781
PleI	GAGTC	4 cut(s)	385, 481, 551, 559
PluTI	GGCGCC	1 cut(s)	189
PpsI	GAGTC	4 cut(s)	385, 481, 551, 559
Ppu21I	YACGTR	1 cut(s)	734
Psp6I	CCWGG	1 cut(s)	24
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	187, 991
PspPI	GGNCC	1 cut(s)	989
PstNI	CAGNNNCTG	2 cut(s)	536, 1043
PsuI	RGATCY	2 cut(s)	132, 921
RsaI	GTAC	2 cut(s)	454, 811
RsaNI	GTAC	2 cut(s)	453, 810
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	4 cut(s)	672, 887, 897, 953
SatI	GCNGC	5 cut(s)	486, 544, 648, 651, 780
Sau3AI	GATC	3 cut(s)	132, 921, 939
Sau96I	GGNCC	1 cut(s)	989
ScaI	AGTACT	2 cut(s)	454, 811
SchI	GAGTC	4 cut(s)	386, 482, 551, 560
ScrFI	CCNGG	1 cut(s)	26
SfaNI	GCATC	3 cut(s)	93, 136, 753
SfoI	GGCGCC	1 cut(s)	187
SinI	GGWCC	1 cut(s)	989
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	3 cut(s)	44, 207, 845
SmoI	CTYRAG	3 cut(s)	44, 207, 845
Sse9I	AATT	1 cut(s)	96
SsiI	CCGC	4 cut(s)	222, 299, 345, 779
SspDI	GGCGCC	1 cut(s)	185
SspMI	CTAG	3 cut(s)	489, 635, 813
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	1 cut(s)	771
TaaI	ACNGT	3 cut(s)	71, 457, 691
TaiI	ACGT	2 cut(s)	736, 1051
TaqI	TCGA	1 cut(s)	871
TaqII	GACCGA	1 cut(s)	977
TasI	AATT	1 cut(s)	96
TatI	WGTACW	2 cut(s)	452, 809
TauI	GCSGC	1 cut(s)	782
TfiI	GAWTC	2 cut(s)	581, 631
Tru1I	TTAA	4 cut(s)	672, 887, 897, 953
Tru9I	TTAA	4 cut(s)	672, 887, 897, 953
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	3 cut(s)	190, 217, 226
TseI	GCWGC	4 cut(s)	485, 543, 647, 650
Tsp45I	GTSAC	3 cut(s)	190, 217, 226
TspDTI	ATGAA	3 cut(s)	348, 408, 918
TspRI	CASTG	1 cut(s)	484
Van91I	CCANNNNNTGG	2 cut(s)	999, 1043
VpaK11BI	GGWCC	1 cut(s)	989
XapI	RAATTY	1 cut(s)	96
XspI	CTAG	3 cut(s)	489, 635, 813
ZraI	GACGTC	1 cut(s)	1049
ZrmI	AGTACT	2 cut(s)	454, 811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.