Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8125946.1

Orthogroup ID

OG0007396

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 625

Gene Structure 625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8125946.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 625 bp

acggttcagatcgatcagcaagcggcggagtcgttacggaaaaacgagaagcctgtcgccgacgacgacttgaagttgggcgctccggcgaaaaccggaggcagtgtgcctctgaaggaccagttgaagaagaaaaccctagaaaatagtgattatagcggaaaattaaggagtgatccgagctttagcagtgttaatagcagcaattatagtagtggcggtaatgaaaatagtagtagtaataataaggataaacagattgttggaaaggcgaaatccgagcctcttagtgatagtgactggactcaacttctcagtgcaccaaagccggcagctgctacttctacatcgagccgtggcaatggtttgcacggggttcggggtttgaggaaggatggtaggaggcagggcagtgctgcttctgcttcgaatttggaggttaagaagaatcagaagagtgggattgctaataatgttatgaagtcggtgcagagagcaggtgttggggaaggtaggaagttgaatgggagagtgagtgatggggaggagtctggtattccggattcagcacggaggttttccactggtgaattgaagagtgatggtaaggttatggaaggaggtg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000301 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0006810 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0031090 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234 GO:0071840 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Golgin_A5

Protein Analysis

208

Amino Acids

21.82

Weight (kDa)

9.69

Isoelectric Point (pI)

30.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18190
fragaria_vesca	FvH4_5g17221 FvH4_5g17221 FvH4_5g17221 FvH4_5g17221 FvH4_5g17221
malus_domestica	MD06G1230800.v1.1 MD14G1235400.v1.1
prunus_persica	Prupe.5G232100_v2.0.a1 Prupe.7G033500_v2.0.a1
pyrus_communis	pycom06g20200
rosa_chinensis	RchiOBHm_Chr7g0178571
rosa_laevigata	RLG00000005436 RLG00000013860
rosa_multiflora	Rmu_co8125946.1_g000001 Rmu_sc0012505.1_g000003 Rmu_sc0021447.1_g000002
rosa_roxburghii	Rroxscaffold_3G00274800
rosa_rugosa	Rorug06G0418000
rosa_samantha	Rh5AG530000 Rh7AG016700 Rh7BG016200 Rh7CG016900 Rh7DG016800
rosa_wichuraiana	Rw7G001330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	488
Acc36I	ACCTGC	1 cut(s)	488
AccIII	TCCGGA	1 cut(s)	559
AciI	CCGC	4 cut(s)	23, 26, 159, 219
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	430
AcuI	CTGAAG	1 cut(s)	134
AgsI	TTSAA	4 cut(s)	73, 127, 523, 595
AluBI	AGCT	2 cut(s)	183, 335
AluI	AGCT	2 cut(s)	183, 335
Alw21I	GWGCWC	1 cut(s)	322
Alw44I	GTGCAC	1 cut(s)	318
AlwI	GGATC	1 cut(s)	170
Aor13HI	TCCGGA	1 cut(s)	559
ApaLI	GTGCAC	1 cut(s)	318
ApeKI	GCWGC	4 cut(s)	201, 332, 335, 416
ApoI	RAATTY	1 cut(s)	430
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	599
AsuII	TTCGAA	1 cut(s)	428
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	322
Bbv12I	GWGCWC	1 cut(s)	322
BbvI	GCAGC	4 cut(s)	213, 322, 344, 403
BccI	CCATC	3 cut(s)	389, 533, 596
BceAI	ACGGC	1 cut(s)	339
BcgI	CGANNNNNNTGC	2 cut(s)	359, 393
BfaI	CTAG	1 cut(s)	140
BfoI	RGCGCY	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	488
BisI	GCNGC	5 cut(s)	24, 202, 333, 336, 417
BlsI	GCNGC	5 cut(s)	25, 203, 334, 337, 418
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
Bpu14I	TTCGAA	1 cut(s)	428
Bsa29I	ATCGAT	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	355
BsaWI	WCCGGW	2 cut(s)	95, 559
BsaXI	ACNNNNNCTCC	4 cut(s)	90, 120, 520, 550
Bse118I	RCCGGY	1 cut(s)	328
Bse1I	ACTGG	3 cut(s)	121, 305, 589
Bse3DI	GCAATG	1 cut(s)	367
BseAI	TCCGGA	1 cut(s)	559
BseCI	ATCGAT	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	1 cut(s)	400
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	328
BseNI	ACTGG	3 cut(s)	121, 305, 589
BseRI	GAGGAG	1 cut(s)	560
BseSI	GKGCMC	1 cut(s)	322
BseXI	GCAGC	4 cut(s)	213, 322, 344, 403
BsgI	GTGCAG	1 cut(s)	509
BshVI	ATCGAT	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	322
BsiSI	CCGG	4 cut(s)	86, 96, 329, 560
Bsp119I	TTCGAA	1 cut(s)	428
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp13I	TCCGGA	1 cut(s)	559
Bsp143I	GATC	3 cut(s)	9, 13, 175
BspACI	CCGC	4 cut(s)	23, 26, 159, 219
BspCNI	CTCAG	1 cut(s)	327
BspDI	ATCGAT	1 cut(s)	12
BspEI	TCCGGA	1 cut(s)	559
BspMI	ACCTGC	1 cut(s)	488
BspPI	GGATC	1 cut(s)	170
BspT104I	TTCGAA	1 cut(s)	428
BsrDI	GCAATG	1 cut(s)	367
BsrFI	RCCGGY	1 cut(s)	328
BsrI	ACTGG	3 cut(s)	121, 305, 589
BssAI	RCCGGY	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	3 cut(s)	9, 13, 175
Bst4CI	ACNGT	1 cut(s)	4
Bst6I	CTCTTC	2 cut(s)	449, 590
BstBI	TTCGAA	1 cut(s)	428
BstC8I	GCNNGC	2 cut(s)	21, 330
BstDEI	CTNAG	2 cut(s)	287, 314
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	400
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	3 cut(s)	12, 16, 178
BstMBI	GATC	3 cut(s)	9, 13, 175
BstMWI	GCNNNNNNNGC	1 cut(s)	422
BstSLI	GKGCMC	1 cut(s)	322
BstV1I	GCAGC	4 cut(s)	213, 322, 344, 403
Bsu15I	ATCGAT	1 cut(s)	12
BsuTUI	ATCGAT	1 cut(s)	12
BtgI	CCRYGG	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	400
BtsI	GCAGTG	3 cut(s)	109, 196, 418
BtsIMutI	CAGTG	5 cut(s)	109, 196, 322, 418, 582
BveI	ACCTGC	1 cut(s)	488
Cac8I	GCNNGC	2 cut(s)	21, 330
CfoI	GCGC	1 cut(s)	83
Cfr10I	RCCGGY	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	118
ClaI	ATCGAT	1 cut(s)	12
CviJI	RGCY	6 cut(s)	52, 183, 283, 328, 335, 354
CviKI_1	RGCY	6 cut(s)	52, 183, 283, 328, 335, 354
DdeI	CTNAG	2 cut(s)	287, 314
DpnI	GATC	3 cut(s)	11, 15, 177
DpnII	GATC	3 cut(s)	9, 13, 175
Eam1104I	CTCTTC	2 cut(s)	449, 590
EarI	CTCTTC	2 cut(s)	449, 590
EciI	GGCGGA	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	134
FaiI	YATR	4 cut(s)	156, 210, 479, 614
Fnu4HI	GCNGC	5 cut(s)	24, 202, 333, 336, 417
FokI	GGATG	1 cut(s)	407
Fsp4HI	GCNGC	5 cut(s)	24, 202, 333, 336, 417
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	5 cut(s)	24, 202, 333, 336, 417
HaeII	RGCGCY	1 cut(s)	84
HapII	CCGG	4 cut(s)	86, 96, 329, 560
HhaI	GCGC	1 cut(s)	83
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	5 cut(s)	29, 304, 448, 548, 563
HpaII	CCGG	4 cut(s)	86, 96, 329, 560
HphI	GGTGA	1 cut(s)	599
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	5 cut(s)	9, 114, 180, 280, 453
Hpy188III	TCNNGA	1 cut(s)	560
Hpy8I	GTNNAC	1 cut(s)	320
Hpy99I	CGWCG	2 cut(s)	65, 68
HpyAV	CCTTC	4 cut(s)	109, 385, 503, 611
HpyCH4III	ACNGT	1 cut(s)	4
HpyCH4V	TGCA	3 cut(s)	320, 370, 490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	422
HpyF3I	CTNAG	2 cut(s)	287, 314
HspAI	GCGC	1 cut(s)	81
Kpn2I	TCCGGA	1 cut(s)	559
KroI	GCCGGC	1 cut(s)	328
KroNI	GCCGGC	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	9, 13, 175
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	4 cut(s)	213, 322, 344, 403
MaeI	CTAG	1 cut(s)	140
MaeIII	GTNAC	2 cut(s)	33, 296
MalI	GATC	3 cut(s)	11, 15, 177
MboI	GATC	3 cut(s)	9, 13, 175
MboII	GAAGA	5 cut(s)	139, 142, 457, 466, 607
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	4 cut(s)	164, 205, 430, 590
MlyI	GAGTC	3 cut(s)	38, 298, 557
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	9 cut(s)	92, 120, 294, 381, 396, 430, 538, 567, 614
MroI	TCCGGA	1 cut(s)	559
MroNI	GCCGGC	1 cut(s)	328
MseI	TTAA	3 cut(s)	167, 195, 441
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	4 cut(s)	86, 96, 329, 560
MwoI	GCNNNNNNNGC	1 cut(s)	422
NaeI	GCCGGC	1 cut(s)	330
NdeII	GATC	3 cut(s)	9, 13, 175
NgoMIV	GCCGGC	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	296
NspV	TTCGAA	1 cut(s)	428
PaqCI	CACCTGC	1 cut(s)	488
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PdiI	GCCGGC	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	448, 563
PkrI	GCNGC	5 cut(s)	25, 203, 334, 337, 418
PleI	GAGTC	3 cut(s)	37, 298, 556
PpsI	GAGTC	3 cut(s)	37, 298, 556
PspPI	GGNCC	1 cut(s)	118
PvuII	CAGCTG	1 cut(s)	335
SaqAI	TTAA	3 cut(s)	167, 195, 441
SatI	GCNGC	5 cut(s)	24, 202, 333, 336, 417
Sau3AI	GATC	3 cut(s)	9, 13, 175
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	3 cut(s)	38, 298, 557
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	8 cut(s)	185, 337, 441, 502, 514, 578, 612, 625
SfuI	TTCGAA	1 cut(s)	428
SinI	GGWCC	1 cut(s)	118
Sse9I	AATT	4 cut(s)	164, 205, 430, 590
SsiI	CCGC	4 cut(s)	23, 26, 159, 219
SspMI	CTAG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	4
TaqI	TCGA	3 cut(s)	12, 350, 428
TasI	AATT	4 cut(s)	164, 205, 430, 590
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	2 cut(s)	448, 563
Tru1I	TTAA	3 cut(s)	167, 195, 441
Tru9I	TTAA	3 cut(s)	167, 195, 441
TscAI	CASTG	5 cut(s)	109, 196, 322, 418, 589
TseFI	GTSAC	1 cut(s)	296
TseI	GCWGC	4 cut(s)	201, 332, 335, 416
Tsp45I	GTSAC	1 cut(s)	296
TspDTI	ATGAA	2 cut(s)	240, 494
TspGWI	ACGGA	2 cut(s)	52, 586
TspRI	CASTG	5 cut(s)	109, 196, 322, 418, 589
VneI	GTGCAC	1 cut(s)	318
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	1 cut(s)	430
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.