MD14G1235400.v1.1

Golgin candidate

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
Physical Location & Seq
Reverse (-)
31520846 .. 31525229
4384 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1235400.v1.1.491

Sequence Viewer

Length: 2055 bp
ATGGCGAACTGGATCTCCTCCAAGCTCAGAGCCGCCGAAACTCTCCTCCAACAGATTGATCAGCAAGCTGCGGAGTCGCTGCGGAAAAACGAGAAGCAGATCGCCGACGAATTGAGCTTGGAGACTCCGACGAAAGCGGGGGGCAGTGTGCCTTTGAAGGATCAGTTGAAGAAGAAAACCCTAGAAAATCAAATTAGTGATTATCGCGGAAAATTAACCAGCGATCCGTGCTTAAACATTGTTAGTAACAAGATTAACATTAATGATGATGGTAGTAGTGGTAACAGTAATAGGGATAGAGAGATTGTTGGAATTCCGAAACCAAGGAAGAGTCTTACTGATAGTGACTGGACTCAACTCCTTAGTAGTACACCGAATCGGGGAACTACTTCTGCCGCGAGTCGCGGCAGTGGTTTCCCCGGGGTTCGTAGTTTGAGGAAGGATGGTAGGAGGCAGGGGAGTGCCAGTTCCACATCGAGTTTGTCGGTTTTGGAGGTTAAGAGGAGTCAAAAGAGTGGTGGTAATAATATTGTGAAGACCCCGCGGAGGGCAAGTGGTGGGGAAGGAAGTAAGTTGAATGCGAAAGTAAGTGATGGGGAGGAATCTGGCTTTTCTGTTTCAGATACACCGGAGAGGTCTTCTCGTGTTGAGTTGAAGCGTGATGGTAAGATTTTGGAAGGACGACAGTTGGATTTTAGAGATGTGGGTTTAAACACTTTGGAGGAAATAAAAGATAAGGGAAATGAGGAAAATGGTGAGCGTTTTGATATTAAGGAGCTTTCTTCCGAGGGTAATTTACATTCAGTAAAGAAGGACGATTGGGGTTCTAATAAGAAGTTAGAAGGGGCGAATGTGGGTGATCGGTTGAGAAAGAATGAGTCTAATGAAGCGTCTAGAAGTTCTACCTCTGATGATTTAAGGCGAGGTTTTACTTCGGTAACTGATGGGAGCTCCGAGTCGGACACAGACTCAGGTTCAAGTTCTGATTCCGAGAGTGAGCGTGAAAAGGAGGAAAGGAGAAAGAAGAGGGAGAAGATTCTGGCGGAGAAAGCGGCAGCTAAAGCTGTGGAGGCCATCAAAGAGAGGGAAAATATGGTTGCCAGATTGGAGGGCGAGAAGCAGAGCTTGGAAAAAATACTTGAAAAGCAAGTGAAACAACAAGCACAAGAGGCTTCAAAGCTGCAAATGACTATGATGGAAACCATGGAAGCTGCTGATTTAGAAAAGCAGAAACATAACAACACTAGAATGGAAGCCTTTGTGCGGTTGGCTAAACTGGAGACTGCAAATGCAGACCTTGCAAAATCCCTAGCCAATGTTCAATGGAATCTTCAATTAGAGGCGAATCAGGTAGCAGAACTTCGACAGCAAATTGAGTTAAAAGAAGTGAACCAGGAAGAGCTCAGGAGGAAGATCTCCGACACTCATCAAACAAAATTATCTCTAAAGAAAATGGCAGCGTCAAAAGGGATTGAACTTGAACGAGAGATTTTGGAGGCAGAGTATGCCTTTGTTACCGATAAAGTTGTGCGATTGCAAGATAAGGCACAGAAGCTGGAAGCAAACATTGAATTCACAAGGAAAGAGATAGATGATCCAACAGAAGTAGAAATTGAGCTCAAGCGAAGGCTTGCTCAGATGACTGACCATTTGATTCATAAACAAGCCCAGGTTGAGGCTCTCTCCTCAGAGAAGGCAACTCTTATGTTCAGAATTGAGGCTGTCTCAAGGTTGCTAGATGAAAGCAAGTCATTGACCGAATTTTCCGCTACCTCATCAAGGGACATAGAATCAGGCAGACCTTTATTCGAAGACAGAATCCGGTCAGGCAGGAAGCACCTGGGTTCAGCACTTCAGCAGTTGGAGTCCATATTCTTGGCCGGAGTAGTGTTTTTGAGGAGGAATCCGACTGCGAAAATATGGTCCGGGATTTACTTCTTGTGCCTTCACTTGTGGGTTATTTACATTCTAATGTCCCATTCCCAAGCTTCAAATGAGATCAAATCTGGGTCTGTCATATCCTTGGAAAACATTAACAACACTGCTGGTGTATAG

Protein Analysis

685

Amino Acids

76.31

Weight (kDa)

8.14

Isoelectric Point (pI)

49.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Golgin_A5 PF09787 443 - 659 7e-16 Golgin subfamily A member 5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 4 cut(s) 207, 398, 405, 544
AclWI GGATC 4 cut(s) 20, 168, 218, 1589
AcoI YGGCCR 1 cut(s) 1878
AcsI RAATTY 3 cut(s) 312, 1571, 1760
AcuI CTGAAG 1 cut(s) 1838
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 6 cut(s) 380, 546, 547, 1263, 1675, 1779
AjnI CCWGG 3 cut(s) 1392, 1668, 1839
AjuI GAANNNNNNNTTGG 2 cut(s) 1109, 1141
AloI GAACNNNNNNTCC 3 cut(s) 31, 451, 483
Alw21I GWGCWC 3 cut(s) 953, 1404, 1620
Alw26I GTCTC 3 cut(s) 116, 1274, 1729
AlwI GGATC 4 cut(s) 20, 168, 218, 1589
AlwNI CAGNNNCTG 1 cut(s) 1555
Ama87I CYCGRG 1 cut(s) 419
AoxI GGCC 2 cut(s) 1071, 1878
ApeKI GCWGC 6 cut(s) 68, 79, 1055, 1180, 1211, 1457
ApoI RAATTY 3 cut(s) 312, 1571, 1760
ArsI GACNNNNNNTTYG 4 cut(s) 1633, 1665, 1907, 1939
AseI ATTAAT 1 cut(s) 261
Asp700I GAANNNNTTC 1 cut(s) 388
AspS9I GGNCC 1 cut(s) 1923
AsuC2I CCSGG 3 cut(s) 420, 421, 1927
AsuHPI GGTGA 2 cut(s) 767, 869
AsuII TTCGAA 1 cut(s) 1809
AvaI CYCGRG 1 cut(s) 419
AvaII GGWCC 1 cut(s) 1923
BanII GRGCYC 3 cut(s) 953, 1404, 1620
BarI GAAGNNNNNNTAC 2 cut(s) 1344, 1376
BauI CACGAG 1 cut(s) 642
BbsI GAAGAC 3 cut(s) 542, 630, 1818
Bbv12I GWGCWC 3 cut(s) 953, 1404, 1620
BbvI GCAGC 6 cut(s) 55, 66, 1067, 1167, 1198, 1469
BccI CCATC 7 cut(s) 263, 437, 587, 656, 938, 1082, 1189
BciT130I CCWGG 3 cut(s) 1394, 1670, 1841
BclI TGATCA 1 cut(s) 58
BcnI CCSGG 3 cut(s) 420, 421, 1927
BcoDI GTCTC 3 cut(s) 116, 1274, 1729
BfaI CTAG 5 cut(s) 182, 894, 1245, 1310, 1736
BglII AGATCT 1 cut(s) 1413
Bme1390I CCNGG 6 cut(s) 420, 421, 1394, 1670, 1841, 1927
Bme18I GGWCC 1 cut(s) 1923
BmeT110I CYCGRG 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 1923
BmrFI CCNGG 6 cut(s) 420, 421, 1394, 1670, 1841, 1927
BpiI GAAGAC 3 cut(s) 542, 630, 1818
BplI GAGNNNNNCTC 6 cut(s) 625, 657, 1667, 1699, 1709, 1741
BpmI CTGGAG 1 cut(s) 1298
Bpu10I CCTNAGC 1 cut(s) 1403
Bpu14I TTCGAA 1 cut(s) 1809
BpuEI CTTGAG 2 cut(s) 1604, 1711
BpuMI CCSGG 3 cut(s) 420, 421, 1927
BsaWI WCCGGW 2 cut(s) 628, 1821
BsaXI ACNNNNNCTCC 7 cut(s) 29, 451, 481, 538, 568, 1487, 1517
Bsc4I CCNNNNNNNGG 6 cut(s) 380, 546, 547, 1263, 1675, 1779
Bse1I ACTGG 4 cut(s) 14, 353, 465, 1281
BseBI CCWGG 3 cut(s) 1394, 1670, 1841
BseGI GGATG 1 cut(s) 448
BseLI CCNNNNNNNGG 6 cut(s) 380, 546, 547, 1263, 1675, 1779
BseMII CTCAG 5 cut(s) 40, 984, 1417, 1649, 1701
BseNI ACTGG 4 cut(s) 14, 353, 465, 1281
BseRI GAGGAG 5 cut(s) 7, 35, 517, 1675, 1912
BseXI GCAGC 6 cut(s) 55, 66, 1067, 1167, 1198, 1469
Bsh1236I CGCG 4 cut(s) 207, 398, 405, 544
BshFI GGCC 2 cut(s) 1073, 1880
BsiHKAI GWGCWC 3 cut(s) 953, 1404, 1620
BsiHKCI CYCGRG 1 cut(s) 419
BsiSI CCGG 5 cut(s) 420, 629, 1822, 1881, 1926
BslFI GGGAC 2 cut(s) 1796, 1960
BslI CCNNNNNNNGG 6 cut(s) 380, 546, 547, 1263, 1675, 1779
BsmAI GTCTC 3 cut(s) 116, 1274, 1729
BsmFI GGGAC 2 cut(s) 1796, 1960
BsmI GAATGC 1 cut(s) 583
BsnI GGCC 2 cut(s) 1073, 1880
BsoBI CYCGRG 1 cut(s) 419
Bsp119I TTCGAA 1 cut(s) 1809
Bsp1286I GDGCHC 3 cut(s) 953, 1404, 1620
Bsp143I GATC 9 cut(s) 12, 58, 99, 160, 223, 859, 1413, 1594, 1998
Bsp19I CCATGG 1 cut(s) 1203
BspANI GGCC 2 cut(s) 1073, 1880
BspCNI CTCAG 5 cut(s) 39, 983, 1416, 1648, 1700
BspFNI CGCG 4 cut(s) 207, 398, 405, 544
BspPI GGATC 4 cut(s) 20, 168, 218, 1589
BspQI GCTCTTC 1 cut(s) 1392
BspT104I TTCGAA 1 cut(s) 1809
BsrI ACTGG 4 cut(s) 14, 353, 465, 1281
BssMI GATC 9 cut(s) 12, 58, 99, 160, 223, 859, 1413, 1594, 1998
BssSI CACGAG 1 cut(s) 642
BssT1I CCWWGG 3 cut(s) 323, 1203, 2022
Bst2BI CACGAG 1 cut(s) 642
Bst2UI CCWGG 3 cut(s) 1394, 1670, 1841
Bst4CI ACNGT 2 cut(s) 287, 687
Bst6I CTCTTC 3 cut(s) 323, 1019, 1392
BstAPI GCANNNNNTGC 2 cut(s) 1298, 1505
BstBI TTCGAA 1 cut(s) 1809
BstC8I GCNNGC 2 cut(s) 66, 1632
BstDEI CTNAG 6 cut(s) 26, 362, 970, 1403, 1635, 1687
BstDSI CCRYGG 2 cut(s) 542, 1203
BstENI CCTNNNNNAGG 1 cut(s) 1777
BstF5I GGATG 1 cut(s) 448
BstFNI CGCG 4 cut(s) 207, 398, 405, 544
BstKTI GATC 9 cut(s) 15, 61, 102, 163, 226, 862, 1416, 1597, 2001
BstMAI GTCTC 3 cut(s) 116, 1274, 1729
BstMBI GATC 9 cut(s) 12, 58, 99, 160, 223, 859, 1413, 1594, 1998
BstMWI GCNNNNNNNGC 7 cut(s) 228, 1049, 1061, 1070, 1169, 1298, 1505
BstNI CCWGG 3 cut(s) 1394, 1670, 1841
BstSCI CCNGG 6 cut(s) 418, 419, 1392, 1668, 1839, 1925
BstUI CGCG 4 cut(s) 207, 398, 405, 544
BstV1I GCAGC 6 cut(s) 55, 66, 1067, 1167, 1198, 1469
BstV2I GAAGAC 3 cut(s) 542, 630, 1818
BstX2I RGATCY 2 cut(s) 12, 1413
BstXI CCANNNNNNTGG 1 cut(s) 1876
BstYI RGATCY 2 cut(s) 12, 1413
BsuRI GGCC 2 cut(s) 1073, 1880
BtgI CCRYGG 2 cut(s) 542, 1203
BtsCI GGATG 1 cut(s) 448
BtsI GCAGTG 3 cut(s) 151, 415, 2040
BtsIMutI CAGTG 3 cut(s) 151, 415, 2040
Cac8I GCNNGC 2 cut(s) 66, 1632
CaiI CAGNNNCTG 1 cut(s) 1555
Cfr13I GGNCC 1 cut(s) 1923
Cfr42I CCGCGG 1 cut(s) 545
Cfr9I CCCGGG 1 cut(s) 419
CseI GACGC 2 cut(s) 879, 1449
Csp6I GTAC 1 cut(s) 369
CviAII CATG 1 cut(s) 1204
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 6 cut(s) 26, 362, 970, 1403, 1635, 1687
DpnI GATC 9 cut(s) 14, 60, 101, 162, 225, 861, 1415, 1596, 2000
DpnII GATC 9 cut(s) 12, 58, 99, 160, 223, 859, 1413, 1594, 1998
DraI TTTAAA 1 cut(s) 711
EaeI YGGCCR 1 cut(s) 1878
Eam1104I CTCTTC 3 cut(s) 323, 1019, 1392
EarI CTCTTC 3 cut(s) 323, 1019, 1392
EciI GGCGGA 1 cut(s) 1058
Ecl136II GAGCTC 3 cut(s) 951, 1402, 1618
Eco130I CCWWGG 3 cut(s) 323, 1203, 2022
Eco24I GRGCYC 3 cut(s) 953, 1404, 1620
Eco47I GGWCC 1 cut(s) 1923
Eco53kI GAGCTC 3 cut(s) 951, 1402, 1618
Eco57I CTGAAG 1 cut(s) 1838
Eco88I CYCGRG 1 cut(s) 419
EcoICRI GAGCTC 3 cut(s) 951, 1402, 1618
EcoNI CCTNNNNNAGG 1 cut(s) 1777
EcoRI GAATTC 2 cut(s) 312, 1571
EcoRII CCWGG 3 cut(s) 1392, 1668, 1839
EcoT14I CCWWGG 3 cut(s) 323, 1203, 2022
EcoT38I GRGCYC 3 cut(s) 953, 1404, 1620
ErhI CCWWGG 3 cut(s) 323, 1203, 2022
FaeI CATG 1 cut(s) 1207
FalI AAGNNNNNCTT 2 cut(s) 1109, 1141
FaqI GGGAC 2 cut(s) 1796, 1960
FatI CATG 1 cut(s) 1203
FauI CCCGC 2 cut(s) 130, 549
FbaI TGATCA 1 cut(s) 58
FokI GGATG 1 cut(s) 455
FriOI GRGCYC 3 cut(s) 953, 1404, 1620
FspBI CTAG 5 cut(s) 182, 894, 1245, 1310, 1736
GsuI CTGGAG 1 cut(s) 1298
HaeIII GGCC 2 cut(s) 1073, 1880
HapII CCGG 5 cut(s) 420, 629, 1822, 1881, 1926
HgaI GACGC 2 cut(s) 879, 1449
Hin1II CATG 1 cut(s) 1207
HindIII AAGCTT 1 cut(s) 1986
HpaII CCGG 5 cut(s) 420, 629, 1822, 1881, 1926
HphI GGTGA 2 cut(s) 767, 869
Hpy166II GTNNAC 2 cut(s) 371, 1390
Hpy188III TCNNGA 2 cut(s) 894, 1405
Hpy8I GTNNAC 2 cut(s) 371, 1390
Hpy99I CGWCG 2 cut(s) 110, 133
HpyAV CCTTC 9 cut(s) 151, 433, 557, 671, 805, 836, 1620, 1687, 1955
HpyCH4III ACNGT 2 cut(s) 287, 687
HpyCH4V TGCA 5 cut(s) 1183, 1286, 1292, 1301, 1537
HpyF10VI GCNNNNNNNGC 7 cut(s) 228, 1049, 1061, 1070, 1169, 1298, 1505
HpyF3I CTNAG 6 cut(s) 26, 362, 970, 1403, 1635, 1687
Hsp92II CATG 1 cut(s) 1207
Ksp22I TGATCA 1 cut(s) 58
KspI CCGCGG 1 cut(s) 545
Kzo9I GATC 9 cut(s) 12, 58, 99, 160, 223, 859, 1413, 1594, 1998
LguI GCTCTTC 1 cut(s) 1392
LmnI GCTCC 3 cut(s) 775, 948, 956
Lsp1109I GCAGC 6 cut(s) 55, 66, 1067, 1167, 1198, 1469
MaeI CTAG 5 cut(s) 182, 894, 1245, 1310, 1736
MaeIII GTNAC 5 cut(s) 245, 281, 344, 937, 1513
MalI GATC 9 cut(s) 14, 60, 101, 162, 225, 861, 1415, 1596, 2000
MboI GATC 9 cut(s) 12, 58, 99, 160, 223, 859, 1413, 1594, 1998
MflI RGATCY 2 cut(s) 12, 1413
MhlI GDGCHC 3 cut(s) 953, 1404, 1620
MmeI TCCRAC 9 cut(s) 73, 152, 289, 669, 939, 1443, 1622, 1842, 1931
MroXI GAANNNNTTC 1 cut(s) 388
MslI CAYNNNNRTG 2 cut(s) 1247, 1970
MspA1I CMGCKG 1 cut(s) 544
MspI CCGG 5 cut(s) 420, 629, 1822, 1881, 1926
MspR9I CCNGG 6 cut(s) 420, 421, 1394, 1670, 1841, 1927
MssI GTTTAAAC 1 cut(s) 711
Mva1269I GAATGC 1 cut(s) 583
MvaI CCWGG 3 cut(s) 1394, 1670, 1841
MvnI CGCG 4 cut(s) 207, 398, 405, 544
MwoI GCNNNNNNNGC 7 cut(s) 228, 1049, 1061, 1070, 1169, 1298, 1505
NciI CCSGG 3 cut(s) 420, 421, 1927
NcoI CCATGG 1 cut(s) 1203
NdeII GATC 9 cut(s) 12, 58, 99, 160, 223, 859, 1413, 1594, 1998
NlaIII CATG 1 cut(s) 1207
NmuCI GTSAC 1 cut(s) 344
NspV TTCGAA 1 cut(s) 1809
PciSI GCTCTTC 1 cut(s) 1392
PctI GAATGC 1 cut(s) 583
PdmI GAANNNNTTC 1 cut(s) 388
PfoI TCCNGGA 1 cut(s) 1925
PmeI GTTTAAAC 1 cut(s) 711
PshBI ATTAAT 1 cut(s) 261
Psp124BI GAGCTC 3 cut(s) 953, 1404, 1620
Psp6I CCWGG 3 cut(s) 1392, 1668, 1839
PspGI CCWGG 3 cut(s) 1392, 1668, 1839
PspPI GGNCC 1 cut(s) 1923
PstNI CAGNNNCTG 1 cut(s) 1555
PsuI RGATCY 2 cut(s) 12, 1413
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
RseI CAYNNNNRTG 2 cut(s) 1247, 1970
SacI GAGCTC 3 cut(s) 953, 1404, 1620
SacII CCGCGG 1 cut(s) 545
SapI GCTCTTC 1 cut(s) 1392
Sau3AI GATC 9 cut(s) 12, 58, 99, 160, 223, 859, 1413, 1594, 1998
Sau96I GGNCC 1 cut(s) 1923
ScrFI CCNGG 6 cut(s) 420, 421, 1394, 1670, 1841, 1927
SduI GDGCHC 3 cut(s) 953, 1404, 1620
Sfr303I CCGCGG 1 cut(s) 545
SfuI TTCGAA 1 cut(s) 1809
SgrBI CCGCGG 1 cut(s) 545
SinI GGWCC 1 cut(s) 1923
SmaI CCCGGG 1 cut(s) 421
SmiMI CAYNNNNRTG 2 cut(s) 1247, 1970
SmlI CTYRAG 2 cut(s) 1619, 1726
SmoI CTYRAG 2 cut(s) 1619, 1726
SspI AATATT 1 cut(s) 529
SspMI CTAG 5 cut(s) 182, 894, 1245, 1310, 1736
SstI GAGCTC 3 cut(s) 953, 1404, 1620
StyD4I CCNGG 6 cut(s) 418, 419, 1392, 1668, 1839, 1925
StyI CCWWGG 3 cut(s) 323, 1203, 2022
TaaI ACNGT 2 cut(s) 287, 687
TaqI TCGA 3 cut(s) 476, 1363, 1809
TaqII GACCGA 1 cut(s) 1772
TatI WGTACW 1 cut(s) 368
TauI GCSGC 4 cut(s) 35, 398, 408, 1055
TscAI CASTG 3 cut(s) 151, 415, 2047
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 6 cut(s) 68, 79, 1055, 1180, 1211, 1457
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 3 cut(s) 900, 1646, 1755
TspGWI ACGGA 1 cut(s) 216
TspMI CCCGGG 1 cut(s) 419
TspRI CASTG 3 cut(s) 151, 415, 2047
VpaK11BI GGWCC 1 cut(s) 1923
VspI ATTAAT 1 cut(s) 261
XagI CCTNNNNNAGG 1 cut(s) 1777
XapI RAATTY 3 cut(s) 312, 1571, 1760
XbaI TCTAGA 1 cut(s) 893
XmaI CCCGGG 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 388
XspI CTAG 5 cut(s) 182, 894, 1245, 1310, 1736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.