Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007396

Physical Location & Seq

Genomic Coordinates Reverse (-)

23330700 .. 23331798

Gene Structure 1099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGACAAGGAAAGAGATAGAGGATCCAACAGAAATAGAAATTGAGCTCAAGCGAAGGCTTGCTCAGATGACTGACCATTTGATTCATAAACAAGCCCAGGTTGAGGCTCTCTCCTCCGAGAAGGCAACTCTTCTGTTCAGAATTGAGGCTGTCTCGAGGTCACTAGACGAAAGCAAGTCATTGACCGAATTTTCCGCTGCCTCGTCAAGGGACATAGAATCGGGCAGACCTTTATTCGAAGACAGAATCCGGTCGGGCAGGAAACACCTGGGTTCAGCACTTCAGCAATTGGAGTCCATATTCTTGGCCGGAGTAGTGTTTTTGAGGAGGAATCCGACTGCGAAAATATGGGCCACGATTTACTTCGTGTGCCTTCATTTGTGGGTTATTTACATTCTAATGTCCCGTTCTCAAGCTTCAAATGAGATGAAATCCGGGGCTGTCATATCCTTGGAAAGCATTAACAACACTGCTGGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000301 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005795 GO:0006810 GO:0006891 GO:0006996 GO:0007030 GO:0008150 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0031090 GO:0031984 GO:0031985 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048193 GO:0051179 GO:0051234 GO:0071840 GO:0098588 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Golgin_A5

Protein Analysis

161

Amino Acids

18.08

Weight (kDa)

7.92

Isoelectric Point (pI)

74.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Golgin_A5	PF09787	12 - 134	5.7e-17	Golgin subfamily A member 5

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18190
fragaria_vesca	FvH4_5g17221 FvH4_5g17221 FvH4_5g17221 FvH4_5g17221 FvH4_5g17221
malus_domestica	MD06G1230800.v1.1 MD14G1235400.v1.1
prunus_persica	Prupe.5G232100_v2.0.a1 Prupe.7G033500_v2.0.a1
pyrus_communis	pycom06g20200
rosa_chinensis	RchiOBHm_Chr7g0178571
rosa_laevigata	RLG00000005436 RLG00000013860
rosa_multiflora	Rmu_co8125946.1_g000001 Rmu_sc0012505.1_g000003 Rmu_sc0021447.1_g000002
rosa_roxburghii	Rroxscaffold_3G00274800
rosa_rugosa	Rorug06G0418000
rosa_samantha	Rh5AG530000 Rh7AG016700 Rh7BG016200 Rh7CG016900 Rh7DG016800
rosa_wichuraiana	Rw7G001330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	2 cut(s)	17, 30
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	103, 207
AgsI	TTSAA	1 cut(s)	420
AjnI	CCWGG	2 cut(s)	96, 267
AluBI	AGCT	2 cut(s)	46, 416
AluI	AGCT	2 cut(s)	46, 416
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	2 cut(s)	17, 30
Ama87I	CYCGRG	1 cut(s)	154
AoxI	GGCC	2 cut(s)	306, 351
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	188
ArsI	GACNNNNNNTTYG	2 cut(s)	61, 93
AspS9I	GGNCC	1 cut(s)	351
AsuC2I	CCSGG	1 cut(s)	436
AsuII	TTCGAA	1 cut(s)	237
AvaI	CYCGRG	1 cut(s)	154
BamHI	GGATCC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	184
BciT130I	CCWGG	2 cut(s)	98, 269
BcnI	CCSGG	1 cut(s)	436
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	164
BisI	GCNGC	1 cut(s)	198
BlsI	GCNGC	1 cut(s)	199
Bme1390I	CCNGG	3 cut(s)	98, 269, 436
BmeT110I	CYCGRG	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	351
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	3 cut(s)	98, 269, 436
BpiI	GAAGAC	1 cut(s)	246
BplI	GAGNNNNNCTC	4 cut(s)	95, 127, 137, 169
Bpu14I	TTCGAA	1 cut(s)	237
BpuEI	CTTGAG	2 cut(s)	32, 396
BpuMI	CCSGG	1 cut(s)	436
BsaJI	CCNNGG	4 cut(s)	96, 268, 435, 450
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 207
BseBI	CCWGG	2 cut(s)	98, 269
BseDI	CCNNGG	4 cut(s)	96, 268, 435, 450
BseLI	CCNNNNNNNGG	2 cut(s)	103, 207
BseMII	CTCAG	1 cut(s)	77
BseRI	GAGGAG	2 cut(s)	103, 340
BseXI	GCAGC	1 cut(s)	184
Bsh1285I	CGRYCG	1 cut(s)	254
BshFI	GGCC	2 cut(s)	308, 353
BsiEI	CGRYCG	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	154
BsiSI	CCGG	3 cut(s)	250, 309, 435
BslFI	GGGAC	2 cut(s)	224, 388
BslI	CCNNNNNNNGG	2 cut(s)	103, 207
BsmAI	GTCTC	1 cut(s)	157
BsmFI	GGGAC	2 cut(s)	224, 388
BsnI	GGCC	2 cut(s)	308, 353
BsoBI	CYCGRG	1 cut(s)	154
Bsp119I	TTCGAA	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	22
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	2 cut(s)	308, 353
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	24
BspPI	GGATC	2 cut(s)	17, 30
BspT104I	TTCGAA	1 cut(s)	237
BssECI	CCNNGG	4 cut(s)	96, 268, 435, 450
BssMI	GATC	1 cut(s)	22
BssT1I	CCWWGG	1 cut(s)	450
Bst2UI	CCWGG	2 cut(s)	98, 269
Bst6I	CTCTTC	1 cut(s)	135
BstBI	TTCGAA	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	63
BstENI	CCTNNNNNAGG	1 cut(s)	205
BstKTI	GATC	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	1 cut(s)	22
BstMCI	CGRYCG	1 cut(s)	254
BstNI	CCWGG	2 cut(s)	98, 269
BstSCI	CCNGG	3 cut(s)	96, 267, 434
BstV1I	GCAGC	1 cut(s)	184
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	22
BsuRI	GGCC	2 cut(s)	308, 353
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	351
CviJI	RGCY	9 cut(s)	46, 58, 95, 107, 149, 308, 353, 416, 440
CviKI_1	RGCY	9 cut(s)	46, 58, 95, 107, 149, 308, 353, 416, 440
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	450
Eco24I	GRGCYC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	46
Eco57I	CTGAAG	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	154
EcoICRI	GAGCTC	1 cut(s)	46
EcoNI	CCTNNNNNAGG	1 cut(s)	205
EcoRII	CCWGG	2 cut(s)	96, 267
EcoT14I	CCWWGG	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	450
FaiI	YATR	6 cut(s)	87, 215, 299, 349, 446, 481
FaqI	GGGAC	2 cut(s)	224, 388
Fnu4HI	GCNGC	1 cut(s)	198
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	198
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	308, 353
HapII	CCGG	3 cut(s)	250, 309, 435
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	5 cut(s)	82, 218, 246, 293, 331
HpaII	CCGG	3 cut(s)	250, 309, 435
Hpy188I	TCNGA	4 cut(s)	66, 118, 140, 336
Hpy188III	TCNNGA	1 cut(s)	154
HpyAV	CCTTC	3 cut(s)	48, 115, 383
HpyF3I	CTNAG	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	22
LpnPI	CCDG	9 cut(s)	83, 110, 244, 254, 263, 281, 322, 448, 459
Lsp1109I	GCAGC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	159
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	2 cut(s)	122, 251
MfeI	CAATTG	1 cut(s)	287
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	4 cut(s)	39, 141, 188, 287
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	2 cut(s)	50, 359
MnlI	CCTC	8 cut(s)	13, 97, 124, 139, 150, 211, 318, 321
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	3 cut(s)	250, 309, 435
MspR9I	CCNGG	3 cut(s)	98, 269, 436
MunI	CAATTG	1 cut(s)	287
MvaI	CCWGG	2 cut(s)	98, 269
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	1 cut(s)	22
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	1 cut(s)	159
NspV	TTCGAA	1 cut(s)	237
PaeR7I	CTCGAG	1 cut(s)	154
PfeI	GAWTC	4 cut(s)	82, 218, 246, 331
PkrI	GCNGC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp124BI	GAGCTC	1 cut(s)	48
Psp6I	CCWGG	2 cut(s)	96, 267
PspGI	CCWGG	2 cut(s)	96, 267
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	398
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	1 cut(s)	198
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	1 cut(s)	351
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	3 cut(s)	98, 269, 436
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	6 cut(s)	48, 102, 161, 232, 270, 418
Sfr274I	CTCGAG	1 cut(s)	154
SfuI	TTCGAA	1 cut(s)	237
SlaI	CTCGAG	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	3 cut(s)	47, 154, 411
SmoI	CTYRAG	3 cut(s)	47, 154, 411
Sse9I	AATT	4 cut(s)	39, 141, 188, 287
SsiI	CCGC	1 cut(s)	195
SspMI	CTAG	1 cut(s)	164
SstI	GAGCTC	1 cut(s)	48
StyD4I	CCNGG	3 cut(s)	96, 267, 434
StyI	CCWWGG	1 cut(s)	450
TaqI	TCGA	2 cut(s)	155, 237
TaqII	GACCGA	1 cut(s)	200
TasI	AATT	4 cut(s)	39, 141, 188, 287
TfiI	GAWTC	4 cut(s)	82, 218, 246, 331
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	1 cut(s)	159
TseI	GCWGC	1 cut(s)	197
Tsp45I	GTSAC	1 cut(s)	159
TspDTI	ATGAA	3 cut(s)	74, 365, 443
TspRI	CASTG	1 cut(s)	475
XagI	CCTNNNNNAGG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	188
XhoI	CTCGAG	1 cut(s)	154
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.