Rorug06G0418000

Golgin candidate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007396
Physical Location & Seq
Reverse (-)
55709927 .. 55712477
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0418000.1

Sequence Viewer

Length: 1179 bp
ATGGAGGTGGTGCAGATACTTCACATGAACAAAGGCAACGGCGAGGCTAGTTATGCCCAAAATTCCAAAGTTCAGAACAAAATATTTGCAATCGCAAAGCCAATCCTTGAGAAAGCCTTGCTCGAACTGTTGGGGTCAAACCGTCTTATGGCAATGGAGAGTATGGGCATAGCGGATTTGGGTTGCTCATCTGGACCTAACACCTTGCTTCTCATATCGGAGATCATGGATGTCATACATGCCCAACTCAGCAGTGGCCAGCTGCATCCCTCGTGGTCGTCAATGGAGTTTAGAGTGTTTCTCAACGACCTATTCAGCAACGACTTCAACACCGTCTTCATGACACTTCCCGCATTCTACAACAAGCTGAGAGAAGACGATCGCTACAGGAGATTGTTTGGGGCTAACCCCAACCTCTTCATTTCCGCTGTGCCGGGCTCTTTCTACGGCAGATTGTTTGCCAGAAAAAGCCTGCATTTCGTGCACTCGTCCTCCAGTCTTCACTGGCTCTCTCAGGTTCCCCCGAGCCTGGAAAGCAAGGCCGGCACGGCCTTGAACAAGGGGAAGATCTACATTTCTAAGAGCAGTCCGCAATGCGTATTGGATGCGTACTCACTTCAATTCCACGAGGACTTTTTGATGTTTCTCAAGTCTCGGGCAGAAGAAATAGTTGGAGGAGGAAGAATGGTCTTGTCATTCATGGGCAGGCCAACACTTGACCCTACAACCGAACAGAGTTGCTACCATTGGGAACTCTTGGCCCTTGCATTGATGAGCATGGTTTCAGATGGTCTTGTGGAAGAGGAGAAAGTTGATTCCTTCAACGCTCCCTACTATGCCCCATGTGCAGAGGAACTGAAGTCGGAGTTGCAAAAGGACGGCTCCTTCATAATGGACCGACTTGAAGAATTCGAAATTGATTGGGACGGTGGTGGTGATGTTGTTGATGATCAAGCTAATATCGTTAATGGTTTTGATCATGATCAGATGGTGGCTATTAGTGGGAAGCGGGTGGCCAAAACCATAAGAGCGGTGGTAGAGTCAATGATCGAAGCTCATTTCGGGATAGAAATTATGGATGATCTGTTTCAGAGGTACACGGAGCTCGTCACCAATCACTTGTCAAAGAGGAGAACCAAGTATATCAATTTGGTCATTTCGCTGATAAGAAGGGATTGA

Protein Analysis

392

Amino Acids

44.15

Weight (kDa)

5.44

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 51 - 390 4.2e-124 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1031
AciI CCGC 6 cut(s) 173, 351, 426, 590, 1009, 1031
AcoI YGGCCR 2 cut(s) 256, 1014
AcsI RAATTY 2 cut(s) 61, 908
AcuI CTGAAG 1 cut(s) 878
AfaI GTAC 2 cut(s) 611, 1097
AfiI CCNNNNNNNGG 2 cut(s) 148, 529
AgsI TTSAA 5 cut(s) 328, 556, 620, 823, 905
AjnI CCWGG 1 cut(s) 528
AjuI GAANNNNNNNTTGG 2 cut(s) 654, 686
AluBI AGCT 5 cut(s) 262, 367, 956, 1055, 1105
AluI AGCT 5 cut(s) 262, 367, 956, 1055, 1105
Alw21I GWGCWC 2 cut(s) 486, 1107
Alw26I GTCTC 1 cut(s) 657
Alw44I GTGCAC 1 cut(s) 482
Ama87I CYCGRG 2 cut(s) 523, 654
AoxI GGCC 6 cut(s) 256, 540, 549, 707, 759, 1014
ApaLI GTGCAC 1 cut(s) 482
ApeKI GCWGC 1 cut(s) 262
ApoI RAATTY 2 cut(s) 61, 908
AspS9I GGNCC 3 cut(s) 194, 760, 895
AsuC2I CCSGG 1 cut(s) 435
AsuHPI GGTGA 2 cut(s) 947, 1102
AsuII TTCGAA 1 cut(s) 912
AvaI CYCGRG 2 cut(s) 523, 654
AvaII GGWCC 2 cut(s) 194, 895
BaeGI GKGCMC 1 cut(s) 486
BalI TGGCCA 2 cut(s) 258, 1016
BanII GRGCYC 2 cut(s) 440, 1107
BauI CACGAG 2 cut(s) 271, 626
BbsI GAAGAC 3 cut(s) 328, 381, 491
Bbv12I GWGCWC 2 cut(s) 486, 1107
BbvI GCAGC 1 cut(s) 249
BccI CCATC 2 cut(s) 782, 982
BceAI ACGGC 4 cut(s) 55, 463, 564, 895
BciT130I CCWGG 1 cut(s) 530
BclI TGATCA 3 cut(s) 949, 976, 982
BcnI CCSGG 1 cut(s) 435
BcoDI GTCTC 1 cut(s) 657
BfaI CTAG 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 385
BglI GCCNNNNNGGC 1 cut(s) 548
BglII AGATCT 1 cut(s) 567
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
Bme1390I CCNGG 2 cut(s) 435, 530
Bme18I GGWCC 2 cut(s) 194, 895
BmeT110I CYCGRG 2 cut(s) 523, 654
BmgT120I GGNCC 3 cut(s) 194, 760, 895
BmiI GGNNCC 2 cut(s) 519, 883
BmrFI CCNGG 2 cut(s) 435, 530
BmsI GCATC 2 cut(s) 274, 595
BpiI GAAGAC 3 cut(s) 328, 381, 491
BplI GAGNNNNNCTC 2 cut(s) 285, 317
BpmI CTGGAG 1 cut(s) 478
Bpu14I TTCGAA 1 cut(s) 912
BpuEI CTTGAG 2 cut(s) 128, 632
BpuMI CCSGG 1 cut(s) 435
BsaBI GATNNNNATC 1 cut(s) 981
BsaXI ACNNNNNCTCC 2 cut(s) 476, 506
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 529
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 2 cut(s) 495, 509
Bse3DI GCAATG 2 cut(s) 159, 599
Bse8I GATNNNNATC 1 cut(s) 981
BseBI CCWGG 1 cut(s) 530
BseGI GGATG 4 cut(s) 235, 265, 610, 1084
BseJI GATNNNNATC 1 cut(s) 981
BseLI CCNNNNNNNGG 2 cut(s) 148, 529
BseMI GCAATG 2 cut(s) 159, 599
BseMII CTCAG 3 cut(s) 262, 359, 527
BseNI ACTGG 2 cut(s) 495, 509
BseRI GAGGAG 3 cut(s) 690, 818, 1144
BseSI GKGCMC 1 cut(s) 486
BseXI GCAGC 1 cut(s) 249
BsgI GTGCAG 2 cut(s) 32, 867
Bsh1285I CGRYCG 1 cut(s) 382
BshFI GGCC 6 cut(s) 258, 542, 551, 709, 761, 1016
BsiEI CGRYCG 1 cut(s) 382
BsiHKAI GWGCWC 2 cut(s) 486, 1107
BsiHKCI CYCGRG 2 cut(s) 523, 654
BsiSI CCGG 2 cut(s) 434, 543
BslFI GGGAC 1 cut(s) 938
BslI CCNNNNNNNGG 2 cut(s) 148, 529
BsmAI GTCTC 1 cut(s) 657
BsmFI GGGAC 1 cut(s) 938
BsmI GAATGC 1 cut(s) 353
BsnI GGCC 6 cut(s) 258, 542, 551, 709, 761, 1016
BsoBI CYCGRG 2 cut(s) 523, 654
Bsp119I TTCGAA 1 cut(s) 912
Bsp1286I GDGCHC 3 cut(s) 440, 486, 1107
Bsp143I GATC 8 cut(s) 222, 379, 567, 949, 976, 982, 1047, 1081
BspACI CCGC 6 cut(s) 173, 351, 426, 590, 1009, 1031
BspANI GGCC 6 cut(s) 258, 542, 551, 709, 761, 1016
BspCNI CTCAG 3 cut(s) 261, 360, 526
BspHI TCATGA 2 cut(s) 339, 979
BspLI GGNNCC 2 cut(s) 519, 883
BspT104I TTCGAA 1 cut(s) 912
BsrBI CCGCTC 1 cut(s) 1031
BsrDI GCAATG 2 cut(s) 159, 599
BsrFI RCCGGY 1 cut(s) 542
BsrI ACTGG 2 cut(s) 495, 509
BssAI RCCGGY 1 cut(s) 542
BssMI GATC 8 cut(s) 222, 379, 567, 949, 976, 982, 1047, 1081
BssSI CACGAG 2 cut(s) 271, 626
Bst2BI CACGAG 2 cut(s) 271, 626
Bst2UI CCWGG 1 cut(s) 530
Bst4CI ACNGT 4 cut(s) 129, 143, 334, 929
Bst6I CTCTTC 2 cut(s) 422, 795
BstAPI GCANNNNNTGC 1 cut(s) 481
BstBI TTCGAA 1 cut(s) 912
BstC8I GCNNGC 4 cut(s) 260, 473, 544, 707
BstDEI CTNAG 4 cut(s) 248, 368, 513, 579
BstF5I GGATG 4 cut(s) 235, 265, 610, 1084
BstKTI GATC 8 cut(s) 225, 382, 570, 952, 979, 985, 1050, 1084
BstMAI GTCTC 1 cut(s) 657
BstMBI GATC 8 cut(s) 222, 379, 567, 949, 976, 982, 1047, 1081
BstMCI CGRYCG 1 cut(s) 382
BstMWI GCNNNNNNNGC 6 cut(s) 53, 481, 534, 543, 548, 845
BstNI CCWGG 1 cut(s) 530
BstNSI RCATGY 1 cut(s) 242
BstSCI CCNGG 2 cut(s) 433, 528
BstSFI CTRYAG 1 cut(s) 385
BstSLI GKGCMC 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 249
BstV2I GAAGAC 3 cut(s) 328, 381, 491
BstX2I RGATCY 1 cut(s) 567
BstYI RGATCY 1 cut(s) 567
BsuRI GGCC 6 cut(s) 258, 542, 551, 709, 761, 1016
BtsCI GGATG 4 cut(s) 235, 265, 610, 1084
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 2 cut(s) 259, 502
Cac8I GCNNGC 4 cut(s) 260, 473, 544, 707
CciI TCATGA 2 cut(s) 339, 979
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 3 cut(s) 194, 760, 895
Csp6I GTAC 2 cut(s) 610, 1096
CviAII CATG 8 cut(s) 25, 226, 239, 340, 700, 778, 843, 980
CviQI GTAC 2 cut(s) 610, 1096
DdeI CTNAG 4 cut(s) 248, 368, 513, 579
DpnI GATC 8 cut(s) 224, 381, 569, 951, 978, 984, 1049, 1083
DpnII GATC 8 cut(s) 222, 379, 567, 949, 976, 982, 1047, 1081
EaeI YGGCCR 2 cut(s) 256, 1014
Eam1104I CTCTTC 2 cut(s) 422, 795
EarI CTCTTC 2 cut(s) 422, 795
Ecl136II GAGCTC 1 cut(s) 1105
Eco24I GRGCYC 2 cut(s) 440, 1107
Eco47I GGWCC 2 cut(s) 194, 895
Eco53kI GAGCTC 1 cut(s) 1105
Eco57I CTGAAG 1 cut(s) 878
Eco88I CYCGRG 2 cut(s) 523, 654
EcoICRI GAGCTC 1 cut(s) 1105
EcoRI GAATTC 1 cut(s) 908
EcoRII CCWGG 1 cut(s) 528
EcoT38I GRGCYC 2 cut(s) 440, 1107
FaeI CATG 8 cut(s) 28, 229, 242, 343, 703, 781, 846, 983
FaqI GGGAC 1 cut(s) 938
FatI CATG 8 cut(s) 24, 225, 238, 339, 699, 777, 842, 979
FauI CCCGC 2 cut(s) 358, 1002
FbaI TGATCA 3 cut(s) 949, 976, 982
Fnu4HI GCNGC 1 cut(s) 263
FokI GGATG 4 cut(s) 242, 252, 617, 1091
FriOI GRGCYC 2 cut(s) 440, 1107
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 1 cut(s) 48
GluI GCNGC 1 cut(s) 263
GsuI CTGGAG 1 cut(s) 478
HaeIII GGCC 6 cut(s) 258, 542, 551, 709, 761, 1016
HapII CCGG 2 cut(s) 434, 543
Hin1II CATG 8 cut(s) 28, 229, 242, 343, 703, 781, 846, 983
HinfI GANTC 2 cut(s) 815, 1040
HpaII CCGG 2 cut(s) 434, 543
HphI GGTGA 2 cut(s) 947, 1102
Hpy166II GTNNAC 2 cut(s) 484, 1098
Hpy188I TCNGA 6 cut(s) 75, 220, 787, 865, 987, 1092
Hpy188III TCNNGA 4 cut(s) 192, 340, 980, 1063
Hpy8I GTNNAC 2 cut(s) 484, 1098
HpyAV CCTTC 3 cut(s) 829, 895, 1164
HpyCH4III ACNGT 4 cut(s) 129, 143, 334, 929
HpyCH4V TGCA 8 cut(s) 13, 89, 265, 475, 484, 767, 848, 871
HpyF10VI GCNNNNNNNGC 6 cut(s) 53, 481, 534, 543, 548, 845
HpyF3I CTNAG 4 cut(s) 248, 368, 513, 579
Hsp92II CATG 8 cut(s) 28, 229, 242, 343, 703, 781, 846, 983
KroI GCCGGC 1 cut(s) 542
KroNI GCCGGC 1 cut(s) 544
Ksp22I TGATCA 3 cut(s) 949, 976, 982
Kzo9I GATC 8 cut(s) 222, 379, 567, 949, 976, 982, 1047, 1081
LmnI GCTCC 3 cut(s) 832, 887, 1102
Lsp1109I GCAGC 1 cut(s) 249
LweI GCATC 2 cut(s) 274, 595
MaeI CTAG 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 1108
MalI GATC 8 cut(s) 224, 381, 569, 951, 978, 984, 1049, 1083
MbiI CCGCTC 1 cut(s) 1031
MboI GATC 8 cut(s) 222, 379, 567, 949, 976, 982, 1047, 1081
MboII GAAGA 9 cut(s) 328, 386, 409, 491, 577, 674, 693, 812, 917
MflI RGATCY 1 cut(s) 567
MhlI GDGCHC 3 cut(s) 440, 486, 1107
MlsI TGGCCA 2 cut(s) 258, 1016
MluCI AATT 6 cut(s) 61, 620, 908, 915, 1071, 1147
MluNI TGGCCA 2 cut(s) 258, 1016
MlyI GAGTC 1 cut(s) 1049
MmeI TCCRAC 2 cut(s) 652, 843
Mox20I TGGCCA 2 cut(s) 258, 1016
MroNI GCCGGC 1 cut(s) 542
MscI TGGCCA 2 cut(s) 258, 1016
MseI TTAA 1 cut(s) 966
Msp20I TGGCCA 2 cut(s) 258, 1016
MspA1I CMGCKG 2 cut(s) 262, 428
MspI CCGG 2 cut(s) 434, 543
MspR9I CCNGG 2 cut(s) 435, 530
Mva1269I GAATGC 1 cut(s) 353
MvaI CCWGG 1 cut(s) 530
MwoI GCNNNNNNNGC 6 cut(s) 53, 481, 534, 543, 548, 845
NaeI GCCGGC 1 cut(s) 544
NciI CCSGG 1 cut(s) 435
NdeII GATC 8 cut(s) 222, 379, 567, 949, 976, 982, 1047, 1081
NgoMIV GCCGGC 1 cut(s) 542
NlaIII CATG 8 cut(s) 28, 229, 242, 343, 703, 781, 846, 983
NlaIV GGNNCC 2 cut(s) 519, 883
NmuCI GTSAC 1 cut(s) 1108
NspI RCATGY 1 cut(s) 242
NspV TTCGAA 1 cut(s) 912
PagI TCATGA 2 cut(s) 339, 979
PctI GAATGC 1 cut(s) 353
PdiI GCCGGC 1 cut(s) 544
PfeI GAWTC 1 cut(s) 815
PkrI GCNGC 1 cut(s) 264
Ple19I CGATCG 1 cut(s) 382
PleI GAGTC 1 cut(s) 1048
PpsI GAGTC 1 cut(s) 1048
Psp124BI GAGCTC 1 cut(s) 1107
Psp6I CCWGG 1 cut(s) 528
PspGI CCWGG 1 cut(s) 528
PspN4I GGNNCC 2 cut(s) 519, 883
PspPI GGNCC 3 cut(s) 194, 760, 895
PsuI RGATCY 1 cut(s) 567
PvuI CGATCG 1 cut(s) 382
PvuII CAGCTG 1 cut(s) 262
RsaI GTAC 2 cut(s) 611, 1097
RsaNI GTAC 2 cut(s) 610, 1096
SacI GAGCTC 1 cut(s) 1107
SaqAI TTAA 1 cut(s) 966
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 8 cut(s) 222, 379, 567, 949, 976, 982, 1047, 1081
Sau96I GGNCC 3 cut(s) 194, 760, 895
SchI GAGTC 1 cut(s) 1049
ScrFI CCNGG 2 cut(s) 435, 530
SduI GDGCHC 3 cut(s) 440, 486, 1107
SfaNI GCATC 2 cut(s) 274, 595
SfcI CTRYAG 1 cut(s) 385
SfiI GGCCNNNNNGGCC 1 cut(s) 548
SfuI TTCGAA 1 cut(s) 912
SinI GGWCC 2 cut(s) 194, 895
SmlI CTYRAG 2 cut(s) 107, 647
SmoI CTYRAG 2 cut(s) 107, 647
Sse9I AATT 6 cut(s) 61, 620, 908, 915, 1071, 1147
SsiI CCGC 6 cut(s) 173, 351, 426, 590, 1009, 1031
SspI AATATT 1 cut(s) 84
SspMI CTAG 1 cut(s) 48
SstI GAGCTC 1 cut(s) 1107
StyD4I CCNGG 2 cut(s) 433, 528
TaaI ACNGT 4 cut(s) 129, 143, 334, 929
TaqI TCGA 3 cut(s) 123, 912, 1050
TaqII GACCGA 1 cut(s) 912
TasI AATT 6 cut(s) 61, 620, 908, 915, 1071, 1147
TfiI GAWTC 1 cut(s) 815
Tru1I TTAA 1 cut(s) 966
Tru9I TTAA 1 cut(s) 966
TscAI CASTG 2 cut(s) 259, 509
TseFI GTSAC 1 cut(s) 1108
TseI GCWGC 1 cut(s) 262
Tsp45I GTSAC 1 cut(s) 1108
TspDTI ATGAA 5 cut(s) 41, 328, 409, 688, 877
TspGWI ACGGA 1 cut(s) 1115
TspRI CASTG 2 cut(s) 259, 509
VneI GTGCAC 1 cut(s) 482
VpaK11BI GGWCC 2 cut(s) 194, 895
XapI RAATTY 2 cut(s) 61, 908
XceI RCATGY 1 cut(s) 242
XcmI CCANNNNNNNNNTGG 2 cut(s) 251, 1030
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.