Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008987

Physical Location & Seq

Genomic Coordinates Forward (+)

1197623 .. 1198600

Gene Structure 978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1013500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAAACACCCAGAGAAATCGACCAAGTTGGCATACAAGATGATGGAGAACCTGATAAGGCGGAGCCCCCATTATTCACAGTTGGGGATGATGCCTTACCCAATGCATCTGAAAATCAAACCGACCCTGGCACAAAAGTTGCAGTGGAATGTTTAAGCCTAATAAGCGTTGATCAGCTTTTAGATTCGGTTTTGGAGACAACACATCAAGTTGGAAGATTATCAGTCTCAGCTGCTACAAACATGCCTTACATGGAAATGGCTGGCCAGTGTGAGGCCATTCAAATGGGGAAGCAGCAAAAGTTGTCAACGTTTATAGTTGAGAGGTGGTGGGCGGTTGGTGTGTGCTCTACTAGTTTAGAATTAAATCAAGAAATATACCAATCCCATATGAACAAAGGAGGAGTCCTTGTCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

15.2

Weight (kDa)

4.25

Isoelectric Point (pI)

34.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21080
fragaria_vesca	FvH4_7g01250
malus_domestica	MD02G1309100.v1.1 MD07G1013500.v1.1 MD07G1017100.v1.1
prunus_persica	Prupe.2G016800_v2.0.a1 Prupe.2G016800_v2.0.a1
pyrus_communis	pycom03g10630 pycom07g01100 pycom07g01110
rosa_chinensis	RchiOBHm_Chr1g0317001
rosa_laevigata	RLG00000030634
rosa_multiflora	Rmu_sc0002278.1_g000001 Rmu_sc0009007.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330750
rosa_rugosa	Rorug01G0013600.1 Rorug01G0013700 Rorug01G0013700
rosa_samantha	Rh1AG024800 Rh1BG021600 Rh1CG023200 Rh1DG022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	62, 335
AclI	AACGTT	1 cut(s)	311
AcoI	YGGCCR	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	1 cut(s)	284
AhlI	ACTAGT	1 cut(s)	353
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	2 cut(s)	178, 233
AluI	AGCT	2 cut(s)	178, 233
Alw21I	GWGCWC	1 cut(s)	350
Alw26I	GTCTC	2 cut(s)	191, 232
AoxI	GGCC	2 cut(s)	265, 276
ApeKI	GCWGC	2 cut(s)	233, 295
ArsI	GACNNNNNNTTYG	1 cut(s)	390
BalI	TGGCCA	1 cut(s)	267
BanII	GRGCYC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	350
BbvI	GCAGC	2 cut(s)	220, 307
BccI	CCATC	1 cut(s)	38
BciT130I	CCWGG	1 cut(s)	129
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	191, 232
BcuI	ACTAGT	1 cut(s)	353
BfaI	CTAG	1 cut(s)	354
BisI	GCNGC	2 cut(s)	234, 296
BlsI	GCNGC	2 cut(s)	235, 297
Bme1390I	CCNGG	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	2 cut(s)	82, 116
BsaJI	CCNNGG	1 cut(s)	127
BsaXI	ACNNNNNCTCC	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	94
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	268
BseRI	GAGGAG	1 cut(s)	417
BseXI	GCAGC	2 cut(s)	220, 307
BshFI	GGCC	2 cut(s)	267, 278
BsiHKAI	GWGCWC	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	2 cut(s)	191, 232
BsnI	GGCC	2 cut(s)	267, 278
Bsp1286I	GDGCHC	2 cut(s)	69, 350
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	2 cut(s)	62, 335
BspANI	GGCC	2 cut(s)	267, 278
BspCNI	CTCAG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	82
BstC8I	GCNNGC	1 cut(s)	265
BstDEI	CTNAG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	94
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	2 cut(s)	191, 232
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	127
BstV1I	GCAGC	2 cut(s)	220, 307
BstXI	CCANNNNNNTGG	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	267, 278
BtsCI	GGATG	1 cut(s)	94
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	150, 275
Cac8I	GCNNGC	1 cut(s)	265
CviAII	CATG	2 cut(s)	244, 253
CviJI	RGCY	7 cut(s)	67, 159, 178, 233, 263, 267, 278
CviKI_1	RGCY	7 cut(s)	67, 159, 178, 233, 263, 267, 278
DdeI	CTNAG	1 cut(s)	229
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	265
EciI	GGCGGA	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	69
EcoRII	CCWGG	1 cut(s)	127
EcoT22I	ATGCAT	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	2 cut(s)	247, 256
FaiI	YATR	7 cut(s)	35, 245, 254, 317, 379, 390, 392
FatI	CATG	2 cut(s)	243, 252
FauNDI	CATATG	1 cut(s)	390
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	2 cut(s)	234, 296
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	234, 296
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	2 cut(s)	234, 296
HaeIII	GGCC	2 cut(s)	267, 278
Hin1II	CATG	2 cut(s)	247, 256
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HinfI	GANTC	2 cut(s)	185, 405
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	1 cut(s)	309
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	311
HpyCH4V	TGCA	2 cut(s)	107, 143
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpyF3I	CTNAG	1 cut(s)	229
HpySE526I	ACGT	1 cut(s)	311
Hsp92II	CATG	2 cut(s)	247, 256
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	6 cut(s)	25, 66, 114, 141, 249, 281
Lsp1109I	GCAGC	2 cut(s)	220, 307
LweI	GCATC	2 cut(s)	82, 116
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	1 cut(s)	311
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	1 cut(s)	228
MhlI	GDGCHC	2 cut(s)	69, 350
MlsI	TGGCCA	1 cut(s)	267
MluCI	AATT	1 cut(s)	362
MluNI	TGGCCA	1 cut(s)	267
MlyI	GAGTC	1 cut(s)	414
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	3 cut(s)	268, 318, 395
Mox20I	TGGCCA	1 cut(s)	267
Mph1103I	ATGCAT	1 cut(s)	109
MscI	TGGCCA	1 cut(s)	267
MseI	TTAA	3 cut(s)	155, 365, 418
MslI	CAYNNNNRTG	2 cut(s)	257, 284
Msp20I	TGGCCA	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	165
NdeI	CATATG	1 cut(s)	390
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	2 cut(s)	247, 256
NlaIV	GGNNCC	1 cut(s)	66
NsiI	ATGCAT	1 cut(s)	109
NspI	RCATGY	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	235, 297
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
Psp1406I	AACGTT	1 cut(s)	311
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	233
RseI	CAYNNNNRTG	2 cut(s)	257, 284
SaqAI	TTAA	3 cut(s)	155, 365, 418
SatI	GCNGC	2 cut(s)	234, 296
Sau3AI	GATC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	414
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	2 cut(s)	69, 350
SetI	ASST	5 cut(s)	55, 180, 235, 314, 329
SfaNI	GCATC	2 cut(s)	82, 116
SmiMI	CAYNNNNRTG	2 cut(s)	257, 284
SpeI	ACTAGT	1 cut(s)	353
Sse9I	AATT	1 cut(s)	362
SsiI	CCGC	2 cut(s)	62, 335
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	314
TaqI	TCGA	1 cut(s)	21
TasI	AATT	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	3 cut(s)	155, 365, 418
Tru9I	TTAA	3 cut(s)	155, 365, 418
TscAI	CASTG	2 cut(s)	150, 275
TseI	GCWGC	2 cut(s)	233, 295
TspDTI	ATGAA	1 cut(s)	407
TspRI	CASTG	2 cut(s)	150, 275
XceI	RCATGY	1 cut(s)	247
XspI	CTAG	1 cut(s)	354
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.