Rorug01G0013700

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0008987
Physical Location & Seq
Forward (+)
2397334 .. 2400147
2814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0013700.1

Sequence Viewer

Length: 765 bp
ATGGGGAGTGGATCTGATCTGGGCTTGGGGCCGGGACTGGAGTATACATTCCTAATATTTGCTTCTCCAATTGGTAATTATCACAAGGGAAGGGCAGCCCTCAATTTGTATGTTGAGCATAAAATCCACACAGCTATTCCTGGTGGAACTAGAGGTGTCAAGTCTGTCACCAATTACTCACCTGAACTAGAGCAAACTGCATATATCCACTTCTTGGTGCATCTCTTTTGGGGTGGAGCTTTGTTGGGTCATGTTGTTTTGTCAGTTGTTTTAGTCAGTTTAATTTTAGATATGACTGATGTAGCGGTAGAGTGGGCAGAAAAGAATGTTAGAGATAATCCGCATATCTCGGAACTTATTAAAATTCAAAAGGTAGAAAGTGGTGAAAACACCCTTCTAGCAGAAGGATCAAATAATGAGGCATTGGGTATTATGGGCCACCTATTCTTCTTGGAGTGGTCAGGGATGATGGGCATGCTATTCATGATATGGTGGGGAAATCGAAGAACAAAGATCAGAATACTATTGGAGGAAGAGAGAAAAAAAAGGACGCATCCCACTGATGACTATAGTGATGAAGACATTGAAGATGCTGAGAAACCATCTACGCTGAGGCCAAGATCTATATCTGGAGATGATCTTGGTGATTCCTTCTCACTAAGTATAGGCAAATTATGGATAATGTACATTGGACAGATTTATGGACAAGTACATGTTTTTGGCTTTGATGTATATGTAGGCAGGGTGTTGATGTTATTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

28.39

Weight (kDa)

5.55

Isoelectric Point (pI)

28.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 214
AccI GTMKAC 1 cut(s) 44
AciI CCGC 2 cut(s) 305, 341
AclWI GGATC 2 cut(s) 19, 415
AcsI RAATTY 1 cut(s) 363
AfaI GTAC 2 cut(s) 686, 711
AfiI CCNNNNNNNGG 1 cut(s) 214
AflIII ACRYGT 1 cut(s) 712
AgsI TTSAA 2 cut(s) 368, 587
AjnI CCWGG 1 cut(s) 139
AluBI AGCT 2 cut(s) 134, 239
AluI AGCT 2 cut(s) 134, 239
AlwI GGATC 2 cut(s) 19, 415
AoxI GGCC 3 cut(s) 29, 436, 614
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 363
AspS9I GGNCC 2 cut(s) 29, 436
AsuC2I CCSGG 1 cut(s) 33
AsuHPI GGTGA 4 cut(s) 160, 171, 395, 656
BbsI GAAGAC 1 cut(s) 585
BbvCI CCTCAGC 1 cut(s) 611
BbvI GCAGC 1 cut(s) 107
BccI CCATC 2 cut(s) 463, 610
BciT130I CCWGG 1 cut(s) 141
BcnI CCSGG 1 cut(s) 33
BfaI CTAG 3 cut(s) 150, 188, 398
BfmI CTRYAG 1 cut(s) 568
BglII AGATCT 1 cut(s) 620
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 2 cut(s) 33, 141
BmgT120I GGNCC 2 cut(s) 29, 436
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 2 cut(s) 33, 141
BmsI GCATC 3 cut(s) 229, 562, 580
BpiI GAAGAC 1 cut(s) 585
BpmI CTGGAG 2 cut(s) 59, 651
Bpu10I CCTNAGC 1 cut(s) 611
BpuMI CCSGG 1 cut(s) 33
BsaBI GATNNNNATC 1 cut(s) 625
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 42
Bse8I GATNNNNATC 1 cut(s) 625
BseBI CCWGG 1 cut(s) 141
BseGI GGATG 2 cut(s) 471, 553
BseJI GATNNNNATC 1 cut(s) 625
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMII CTCAG 2 cut(s) 585, 602
BseNI ACTGG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 107
BshFI GGCC 3 cut(s) 31, 438, 616
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 48
BsnI GGCC 3 cut(s) 31, 438, 616
Bsp1407I TGTACA 1 cut(s) 684
Bsp143I GATC 6 cut(s) 11, 16, 407, 513, 620, 637
BspACI CCGC 2 cut(s) 305, 341
BspANI GGCC 3 cut(s) 31, 438, 616
BspCNI CTCAG 2 cut(s) 586, 603
BspHI TCATGA 1 cut(s) 483
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 2 cut(s) 19, 415
BsrGI TGTACA 1 cut(s) 684
BsrI ACTGG 1 cut(s) 42
BssMI GATC 6 cut(s) 11, 16, 407, 513, 620, 637
BssNAI GTATAC 1 cut(s) 45
Bst1107I GTATAC 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 528
BstAUI TGTACA 1 cut(s) 684
BstC8I GCNNGC 1 cut(s) 476
BstDEI CTNAG 3 cut(s) 594, 611, 659
BstF5I GGATG 2 cut(s) 471, 553
BstKTI GATC 6 cut(s) 14, 19, 410, 516, 623, 640
BstMBI GATC 6 cut(s) 11, 16, 407, 513, 620, 637
BstNI CCWGG 1 cut(s) 141
BstNSI RCATGY 2 cut(s) 478, 716
BstSCI CCNGG 2 cut(s) 31, 139
BstSFI CTRYAG 1 cut(s) 568
BstV1I GCAGC 1 cut(s) 107
BstV2I GAAGAC 1 cut(s) 585
BstX2I RGATCY 2 cut(s) 11, 620
BstYI RGATCY 2 cut(s) 11, 620
BstZ17I GTATAC 1 cut(s) 45
BsuRI GGCC 3 cut(s) 31, 438, 616
BtsCI GGATG 2 cut(s) 471, 553
BtsIMutI CAGTG 1 cut(s) 558
Cac8I GCNNGC 1 cut(s) 476
CciI TCATGA 1 cut(s) 483
Cfr13I GGNCC 2 cut(s) 29, 436
CseI GACGC 1 cut(s) 559
Csp6I GTAC 2 cut(s) 685, 710
CviAII CATG 4 cut(s) 251, 475, 484, 713
CviJI RGCY 8 cut(s) 24, 31, 98, 134, 239, 438, 616, 723
CviKI_1 RGCY 8 cut(s) 24, 31, 98, 134, 239, 438, 616, 723
CviQI GTAC 2 cut(s) 685, 710
DdeI CTNAG 3 cut(s) 594, 611, 659
DpnI GATC 6 cut(s) 13, 18, 409, 515, 622, 639
DpnII GATC 6 cut(s) 11, 16, 407, 513, 620, 637
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
EcoRII CCWGG 1 cut(s) 139
FaeI CATG 4 cut(s) 254, 478, 487, 716
FaqI GGGAC 1 cut(s) 48
FatI CATG 4 cut(s) 250, 474, 483, 712
FblI GTMKAC 1 cut(s) 44
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 2 cut(s) 478, 540
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 3 cut(s) 150, 188, 398
GluI GCNGC 1 cut(s) 96
GsuI CTGGAG 2 cut(s) 59, 651
HaeIII GGCC 3 cut(s) 31, 438, 616
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 559
Hin1II CATG 4 cut(s) 254, 478, 487, 716
HinfI GANTC 1 cut(s) 647
HpaII CCGG 1 cut(s) 32
HphI GGTGA 4 cut(s) 160, 171, 395, 656
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 3 cut(s) 16, 352, 518
Hpy188III TCNNGA 2 cut(s) 484, 630
Hpy8I GTNNAC 1 cut(s) 45
HpyAV CCTTC 4 cut(s) 84, 398, 404, 661
HpyCH4V TGCA 2 cut(s) 200, 220
HpyF3I CTNAG 3 cut(s) 594, 611, 659
Hsp92II CATG 4 cut(s) 254, 478, 487, 716
Kzo9I GATC 6 cut(s) 11, 16, 407, 513, 620, 637
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 9 cut(s) 5, 23, 45, 126, 153, 195, 447, 615, 727
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 3 cut(s) 229, 562, 580
MaeI CTAG 3 cut(s) 150, 188, 398
MaeIII GTNAC 1 cut(s) 166
MalI GATC 6 cut(s) 13, 18, 409, 515, 622, 639
MboI GATC 6 cut(s) 11, 16, 407, 513, 620, 637
MboII GAAGA 5 cut(s) 439, 516, 545, 590, 599
MfeI CAATTG 1 cut(s) 69
MflI RGATCY 2 cut(s) 11, 620
MluCI AATT 7 cut(s) 69, 76, 103, 172, 282, 363, 671
MnlI CCTC 5 cut(s) 110, 146, 412, 523, 606
MseI TTAA 2 cut(s) 281, 360
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 2 cut(s) 33, 141
MunI CAATTG 1 cut(s) 69
MvaI CCWGG 1 cut(s) 141
NciI CCSGG 1 cut(s) 33
NdeII GATC 6 cut(s) 11, 16, 407, 513, 620, 637
NlaIII CATG 4 cut(s) 254, 478, 487, 716
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 166
NspI RCATGY 2 cut(s) 478, 716
PaeI GCATGC 1 cut(s) 478
PagI TCATGA 1 cut(s) 483
PciI ACATGT 1 cut(s) 712
PfeI GAWTC 1 cut(s) 647
PflMI CCANNNNNTGG 1 cut(s) 214
PkrI GCNGC 1 cut(s) 97
PscI ACATGT 1 cut(s) 712
Psp6I CCWGG 1 cut(s) 139
PspGI CCWGG 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 2 cut(s) 29, 436
PsuI RGATCY 2 cut(s) 11, 620
RsaI GTAC 2 cut(s) 686, 711
RsaNI GTAC 2 cut(s) 685, 710
SaqAI TTAA 2 cut(s) 281, 360
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 6 cut(s) 11, 16, 407, 513, 620, 637
Sau96I GGNCC 2 cut(s) 29, 436
ScrFI CCNGG 2 cut(s) 33, 141
SetI ASST 6 cut(s) 136, 157, 184, 241, 375, 444
SfaNI GCATC 3 cut(s) 229, 562, 580
SfcI CTRYAG 1 cut(s) 568
SphI GCATGC 1 cut(s) 478
Sse9I AATT 7 cut(s) 69, 76, 103, 172, 282, 363, 671
SsiI CCGC 2 cut(s) 305, 341
SspI AATATT 1 cut(s) 57
SspMI CTAG 3 cut(s) 150, 188, 398
StyD4I CCNGG 2 cut(s) 31, 139
TaqI TCGA 1 cut(s) 502
TasI AATT 7 cut(s) 69, 76, 103, 172, 282, 363, 671
TatI WGTACW 2 cut(s) 684, 709
TfiI GAWTC 1 cut(s) 647
Tru1I TTAA 2 cut(s) 281, 360
Tru9I TTAA 2 cut(s) 281, 360
TscAI CASTG 1 cut(s) 565
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 2 cut(s) 472, 591
TspRI CASTG 1 cut(s) 565
Van91I CCANNNNNTGG 1 cut(s) 214
XapI RAATTY 1 cut(s) 363
XceI RCATGY 2 cut(s) 478, 716
XmiI GTMKAC 1 cut(s) 44
XspI CTAG 3 cut(s) 150, 188, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.