Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002278.1

Orthogroup ID

OG0008987

Physical Location & Seq

Genomic Coordinates Reverse (-)

1004 .. 1514

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002278.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgtcagtctcaactgcttcagatatgccttacatggaaatggctggccaatgtgaagcccttcagatggggaagcagcagaagatgtcttctttcatggttgcccaacaaaggcaagaaagtttgattagattttctgctcaggcttccaatgtagtaaacgaagcgccttcttcggttgtcctgggtgttcctacgagtggcaatccattccttgatgcaaatgctgttccggttaaccaacctgcgggcaatggtccgaagctttgtgcaactgaatcccaacattatccccgctttcagctacctgcgtcgagcccatatgataactttttaaaggctgctggttgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.47

Weight (kDa)

5.66

Isoelectric Point (pI)

70.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21080
fragaria_vesca	FvH4_7g01250
malus_domestica	MD02G1309100.v1.1 MD07G1013500.v1.1 MD07G1017100.v1.1
prunus_persica	Prupe.2G016800_v2.0.a1 Prupe.2G016800_v2.0.a1
pyrus_communis	pycom03g10630 pycom07g01100 pycom07g01110
rosa_chinensis	RchiOBHm_Chr1g0317001
rosa_laevigata	RLG00000030634
rosa_multiflora	Rmu_sc0002278.1_g000001 Rmu_sc0009007.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330750
rosa_rugosa	Rorug01G0013600.1 Rorug01G0013700 Rorug01G0013700
rosa_samantha	Rh1AG024800 Rh1BG021600 Rh1CG023200 Rh1DG022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	253, 316
AciI	CCGC	2 cut(s)	248, 295
AcoI	YGGCCR	1 cut(s)	46
AcuI	CTGAAG	1 cut(s)	47
AfiI	CCNNNNNNNGG	4 cut(s)	67, 111, 200, 247
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	2 cut(s)	265, 304
AluI	AGCT	2 cut(s)	265, 304
Alw26I	GTCTC	1 cut(s)	13
AoxI	GGCC	1 cut(s)	46
ApeKI	GCWGC	2 cut(s)	76, 341
Asp700I	GAANNNNTTC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	169
AspS9I	GGNCC	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	257
BalI	TGGCCA	1 cut(s)	48
BanII	GRGCYC	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	81
BbvI	GCAGC	2 cut(s)	88, 328
BccI	CCATC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	13
BfoI	RGCGCY	1 cut(s)	170
BfuAI	ACCTGC	2 cut(s)	253, 316
BisI	GCNGC	2 cut(s)	77, 342
BlsI	GCNGC	2 cut(s)	78, 343
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	208
BpiI	GAAGAC	1 cut(s)	81
Bpu10I	CCTNAGC	1 cut(s)	141
BsaJI	CCNNGG	1 cut(s)	184
BsaWI	WCCGGW	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	4 cut(s)	67, 111, 200, 247
Bse3DI	GCAATG	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	1 cut(s)	184
BseLI	CCNNNNNNNGG	4 cut(s)	67, 111, 200, 247
BseMI	GCAATG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	155
BseXI	GCAGC	2 cut(s)	88, 328
BshFI	GGCC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	4 cut(s)	67, 111, 200, 247
BsmAI	GTCTC	1 cut(s)	13
BsnI	GGCC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	320
BspACI	CCGC	2 cut(s)	248, 295
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	154
BspMI	ACCTGC	2 cut(s)	253, 316
BsrDI	GCAATG	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	46, 250
BstDEI	CTNAG	1 cut(s)	141
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	1 cut(s)	169
BstMAI	GTCTC	1 cut(s)	13
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	88, 328
BstV2I	GAAGAC	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	48
BveI	ACCTGC	2 cut(s)	253, 316
Cac8I	GCNNGC	2 cut(s)	46, 250
CfoI	GCGC	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	1 cut(s)	300
CviAII	CATG	2 cut(s)	34, 97
CviJI	RGCY	8 cut(s)	44, 48, 59, 146, 265, 304, 318, 341
CviKI_1	RGCY	8 cut(s)	44, 48, 59, 146, 265, 304, 318, 341
DdeI	CTNAG	1 cut(s)	141
DraI	TTTAAA	1 cut(s)	336
EaeI	YGGCCR	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	183
EcoT38I	GRGCYC	1 cut(s)	320
FaeI	CATG	2 cut(s)	37, 100
FaiI	YATR	5 cut(s)	26, 35, 98, 322, 324
FatI	CATG	2 cut(s)	33, 96
FauI	CCCGC	2 cut(s)	241, 302
FauNDI	CATATG	1 cut(s)	322
Fnu4HI	GCNGC	2 cut(s)	77, 342
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	2 cut(s)	77, 342
GlaI	GCGC	1 cut(s)	168
GluI	GCNGC	2 cut(s)	77, 342
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	1 cut(s)	48
HapII	CCGG	1 cut(s)	233
HgaI	GACGC	1 cut(s)	300
HhaI	GCGC	1 cut(s)	169
Hin1II	CATG	2 cut(s)	37, 100
Hin6I	GCGC	1 cut(s)	167
HinP1I	GCGC	1 cut(s)	167
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	1 cut(s)	278
HpaI	GTTAAC	1 cut(s)	238
HpaII	CCGG	1 cut(s)	233
Hpy166II	GTNNAC	2 cut(s)	160, 238
Hpy188I	TCNGA	3 cut(s)	22, 66, 261
Hpy8I	GTNNAC	2 cut(s)	160, 238
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	2 cut(s)	71, 180
HpyCH4V	TGCA	2 cut(s)	221, 272
HpyF3I	CTNAG	1 cut(s)	141
Hsp92II	CATG	2 cut(s)	37, 100
HspAI	GCGC	1 cut(s)	167
KspAI	GTTAAC	1 cut(s)	238
LpnPI	CCDG	8 cut(s)	30, 128, 170, 197, 246, 258, 321, 330
Lsp1109I	GCAGC	2 cut(s)	88, 328
LweI	GCATC	1 cut(s)	208
MboII	GAAGA	3 cut(s)	81, 94, 165
MhlI	GDGCHC	1 cut(s)	320
MlsI	TGGCCA	1 cut(s)	48
MluNI	TGGCCA	1 cut(s)	48
Mox20I	TGGCCA	1 cut(s)	48
MroXI	GAANNNNTTC	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	2 cut(s)	237, 335
MslI	CAYNNNNRTG	1 cut(s)	38
Msp20I	TGGCCA	1 cut(s)	48
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	185
MvaI	CCWGG	1 cut(s)	185
NdeI	CATATG	1 cut(s)	322
NlaIII	CATG	2 cut(s)	37, 100
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	78, 343
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	257
RseI	CAYNNNNRTG	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	237, 335
SatI	GCNGC	2 cut(s)	77, 342
Sau96I	GGNCC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	4 cut(s)	247, 267, 306, 310
SfaNI	GCATC	1 cut(s)	208
SinI	GGWCC	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	38
SsiI	CCGC	2 cut(s)	248, 295
StyD4I	CCNGG	1 cut(s)	183
TaqI	TCGA	1 cut(s)	314
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	2 cut(s)	237, 335
Tru9I	TTAA	2 cut(s)	237, 335
TseI	GCWGC	2 cut(s)	76, 341
TspDTI	ATGAA	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.