Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009007.1

Orthogroup ID

OG0008987

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 4488

Gene Structure 4488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009007.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atggtctgtgctgaccatgaaaccagggtcggtgcacaccgtattttgtctgttgttcttgttccatcttctgtttgcccccgtcctcttgctgctgctccccacacttcaaagaaaagtcctattggaaggacactctcaagaactgtatctgtgttttcttcttcagctgctctctttgagaaattaaagaaggagccatctcactcgcaagaaaacattagtcatgagaccaagaacaatgctgtctttggtgaagaagcaaaggttactaacggctcgatgttgcacagattgaaatccaaattcagttcaaaaagacacgcagcagcttcaaatgaaccgctaggtgctgaggaagctacacacaacaaccatcctacaatgcacagattgaagtcaactttaagccgaaactacagtatgaaaaggcaaccatcaactatgactgctgctacaacagctccaagtgttccacataatgaatcgacaatgtcccttaggttaagcagtcgccagattacccttctgctttcatctatctgggcacagtctatctcccctttaaatactcctgaaaactatcaagcaattgctcatacctacagccttgtgttgctatatgctcggactaagccgtcaagacgcagatctctctttaccttggcaacatcgatgattatcttctcggctaatgcgtacaacattgttgcccttgctccttctgctaaagcagcacttacaaatgaaacagttgatccatttctacggttagttgatgactccaagttacaggctgttgaatctagccctgaccaaccaaggaaagtttatggatcaaaagaagatgatgaagatgctttaaggtcactttcgggaattttcaactatgagacagcagttacgtacttaccgattttcctcctgatcgatgatacatgtccattgggagctccgttgagcacggccacggagacacccatacaaatcgaccgatctagcttaccagataatgcagctcctgatactgttgagcctccaatgttcataattgatgatgacgctttacacaatgcatctgaaagtcaaacagatcctaacacaaaattggccgcagaaagtctgagcctcattagtgtcaatgagcttttagattcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

386

Amino Acids

42.03

Weight (kDa)

6.68

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21080
fragaria_vesca	FvH4_7g01250
malus_domestica	MD02G1309100.v1.1 MD07G1013500.v1.1 MD07G1017100.v1.1
prunus_persica	Prupe.2G016800_v2.0.a1 Prupe.2G016800_v2.0.a1
pyrus_communis	pycom03g10630 pycom07g01100 pycom07g01110
rosa_chinensis	RchiOBHm_Chr1g0317001
rosa_laevigata	RLG00000030634
rosa_multiflora	Rmu_sc0002278.1_g000001 Rmu_sc0009007.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330750
rosa_rugosa	Rorug01G0013600.1 Rorug01G0013700 Rorug01G0013700
rosa_samantha	Rh1AG024800 Rh1BG021600 Rh1CG023200 Rh1DG022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	637
AciI	CCGC	2 cut(s)	344, 1113
AclWI	GGATC	3 cut(s)	752, 844, 1088
AcoI	YGGCCR	2 cut(s)	966, 1110
AcsI	RAATTY	2 cut(s)	305, 879
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	2 cut(s)	701, 908
AflIII	ACRYGT	1 cut(s)	938
AgsI	TTSAA	7 cut(s)	111, 298, 315, 336, 397, 803, 886
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	8 cut(s)	170, 332, 362, 464, 953, 1002, 1019, 1147
AluI	AGCT	8 cut(s)	170, 332, 362, 464, 953, 1002, 1019, 1147
Alw21I	GWGCWC	3 cut(s)	37, 955, 965
Alw26I	GTCTC	3 cut(s)	224, 887, 968
Alw44I	GTGCAC	1 cut(s)	33
AlwI	GGATC	3 cut(s)	752, 844, 1088
AlwNI	CAGNNNCTG	1 cut(s)	1022
AoxI	GGCC	2 cut(s)	966, 1110
ApaLI	GTGCAC	1 cut(s)	33
ApeKI	GCWGC	8 cut(s)	92, 95, 170, 326, 329, 452, 734, 1016
ApoI	RAATTY	2 cut(s)	305, 879
AsuHPI	GGTGA	1 cut(s)	266
AxyI	CCTNAGG	1 cut(s)	500
BaeGI	GKGCMC	2 cut(s)	37, 550
BanII	GRGCYC	1 cut(s)	955
Bbv12I	GWGCWC	3 cut(s)	37, 955, 965
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	8 cut(s)	79, 82, 157, 338, 341, 439, 746, 1028
BccI	CCATC	4 cut(s)	73, 208, 384, 445
BceAI	ACGGC	3 cut(s)	292, 622, 981
BciT130I	CCWGG	1 cut(s)	25
BcoDI	GTCTC	3 cut(s)	224, 887, 968
BfaI	CTAG	3 cut(s)	347, 807, 999
BfmI	CTRYAG	2 cut(s)	418, 604
BglII	AGATCT	1 cut(s)	650
BisI	GCNGC	9 cut(s)	93, 96, 171, 327, 330, 453, 735, 1017, 1113
BlsI	GCNGC	9 cut(s)	94, 97, 172, 328, 331, 454, 736, 1018, 1114
Bme1390I	CCNGG	1 cut(s)	25
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	2 cut(s)	847, 1085
Bpu10I	CCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	124
Bsa29I	ATCGAT	2 cut(s)	674, 930
BsaAI	YACGTR	1 cut(s)	906
BsaBI	GATNNNNATC	2 cut(s)	298, 680
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	4 cut(s)	24, 663, 821, 969
BsaXI	ACNNNNNCTCC	2 cut(s)	448, 478
Bse21I	CCTNAGG	1 cut(s)	500
Bse8I	GATNNNNATC	2 cut(s)	298, 680
BseBI	CCWGG	1 cut(s)	25
BseCI	ATCGAT	2 cut(s)	674, 930
BseDI	CCNNGG	4 cut(s)	24, 663, 821, 969
BseGI	GGATG	1 cut(s)	376
BseJI	GATNNNNATC	2 cut(s)	298, 680
BseMII	CTCAG	2 cut(s)	345, 1115
BseSI	GKGCMC	2 cut(s)	37, 550
BseXI	GCAGC	8 cut(s)	79, 82, 157, 338, 341, 439, 746, 1028
Bsh1285I	CGRYCG	1 cut(s)	994
BshFI	GGCC	2 cut(s)	968, 1112
BshVI	ATCGAT	2 cut(s)	674, 930
BsiEI	CGRYCG	1 cut(s)	994
BsiHKAI	GWGCWC	3 cut(s)	37, 955, 965
BslFI	GGGAC	1 cut(s)	481
BsmAI	GTCTC	3 cut(s)	224, 887, 968
BsmFI	GGGAC	1 cut(s)	481
BsnI	GGCC	2 cut(s)	968, 1112
Bso31I	GGTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	4 cut(s)	37, 550, 955, 965
Bsp143I	GATC	6 cut(s)	650, 757, 836, 927, 995, 1093
BspACI	CCGC	2 cut(s)	344, 1113
BspANI	GGCC	2 cut(s)	968, 1112
BspCNI	CTCAG	2 cut(s)	346, 1116
BspDI	ATCGAT	2 cut(s)	674, 930
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	198
BspPI	GGATC	3 cut(s)	752, 844, 1088
BspTNI	GGTCTC	1 cut(s)	224
BssECI	CCNNGG	4 cut(s)	24, 663, 821, 969
BssMI	GATC	6 cut(s)	650, 757, 836, 927, 995, 1093
BssT1I	CCWWGG	2 cut(s)	663, 821
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	7 cut(s)	41, 148, 422, 552, 754, 771, 1030
BstBAI	YACGTR	1 cut(s)	906
BstDEI	CTNAG	4 cut(s)	354, 500, 633, 1124
BstDSI	CCRYGG	1 cut(s)	969
BstF5I	GGATG	1 cut(s)	376
BstKTI	GATC	6 cut(s)	653, 760, 839, 930, 998, 1096
BstMAI	GTCTC	3 cut(s)	224, 887, 968
BstMBI	GATC	6 cut(s)	650, 757, 836, 927, 995, 1093
BstMCI	CGRYCG	1 cut(s)	994
BstMWI	GCNNNNNNNGC	4 cut(s)	359, 461, 725, 734
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	942
BstSCI	CCNGG	1 cut(s)	23
BstSFI	CTRYAG	2 cut(s)	418, 604
BstSLI	GKGCMC	2 cut(s)	37, 550
BstSNI	TACGTA	1 cut(s)	906
BstV1I	GCAGC	8 cut(s)	79, 82, 157, 338, 341, 439, 746, 1028
BstX2I	RGATCY	2 cut(s)	650, 1093
BstYI	RGATCY	2 cut(s)	650, 1093
Bsu15I	ATCGAT	2 cut(s)	674, 930
Bsu36I	CCTNAGG	1 cut(s)	500
BsuRI	GGCC	2 cut(s)	968, 1112
BsuTUI	ATCGAT	2 cut(s)	674, 930
BtgI	CCRYGG	1 cut(s)	969
BtsCI	GGATG	1 cut(s)	376
CaiI	CAGNNNCTG	1 cut(s)	1022
CciI	TCATGA	1 cut(s)	226
ClaI	ATCGAT	2 cut(s)	674, 930
CseI	GACGC	2 cut(s)	654, 1070
Csp6I	GTAC	2 cut(s)	700, 907
CviAII	CATG	3 cut(s)	17, 227, 939
CviQI	GTAC	2 cut(s)	700, 907
DdeI	CTNAG	4 cut(s)	354, 500, 633, 1124
DpnI	GATC	6 cut(s)	652, 759, 838, 929, 997, 1095
DpnII	GATC	6 cut(s)	650, 757, 836, 927, 995, 1093
DraI	TTTAAA	1 cut(s)	567
DrdI	GACNNNNNNGTC	1 cut(s)	637
DseDI	GACNNNNNNGTC	1 cut(s)	637
EaeI	YGGCCR	2 cut(s)	966, 1110
Ecl136II	GAGCTC	1 cut(s)	953
Eco105I	TACGTA	1 cut(s)	906
Eco130I	CCWWGG	2 cut(s)	663, 821
Eco24I	GRGCYC	1 cut(s)	955
Eco31I	GGTCTC	1 cut(s)	224
Eco53kI	GAGCTC	1 cut(s)	953
Eco57I	CTGAAG	1 cut(s)	150
Eco81I	CCTNAGG	1 cut(s)	500
EcoICRI	GAGCTC	1 cut(s)	953
EcoRII	CCWGG	1 cut(s)	23
EcoT14I	CCWWGG	2 cut(s)	663, 821
EcoT22I	ATGCAT	1 cut(s)	1078
EcoT38I	GRGCYC	1 cut(s)	955
ErhI	CCWWGG	2 cut(s)	663, 821
FaeI	CATG	3 cut(s)	20, 230, 942
FalI	AAGNNNNNCTT	2 cut(s)	723, 755
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	3 cut(s)	16, 226, 938
Fnu4HI	GCNGC	9 cut(s)	93, 96, 171, 327, 330, 453, 735, 1017, 1113
FokI	GGATG	1 cut(s)	363
FriOI	GRGCYC	1 cut(s)	955
Fsp4HI	GCNGC	9 cut(s)	93, 96, 171, 327, 330, 453, 735, 1017, 1113
FspBI	CTAG	3 cut(s)	347, 807, 999
GluI	GCNGC	9 cut(s)	93, 96, 171, 327, 330, 453, 735, 1017, 1113
HaeIII	GGCC	2 cut(s)	968, 1112
HgaI	GACGC	2 cut(s)	654, 1070
Hin1II	CATG	3 cut(s)	20, 230, 942
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HinfI	GANTC	4 cut(s)	485, 782, 803, 1154
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	2 cut(s)	35, 402
Hpy188I	TCNGA	3 cut(s)	630, 1081, 1125
Hpy188III	TCNNGA	7 cut(s)	141, 227, 575, 642, 876, 925, 1022
Hpy8I	GTNNAC	2 cut(s)	35, 402
HpyAV	CCTTC	4 cut(s)	123, 187, 536, 732
HpyCH4III	ACNGT	7 cut(s)	41, 148, 422, 552, 754, 771, 1030
HpyCH4IV	ACGT	1 cut(s)	905
HpyCH4V	TGCA	5 cut(s)	35, 289, 388, 1016, 1076
HpyF10VI	GCNNNNNNNGC	4 cut(s)	359, 461, 725, 734
HpyF3I	CTNAG	4 cut(s)	354, 500, 633, 1124
HpySE526I	ACGT	1 cut(s)	905
Hsp92II	CATG	3 cut(s)	20, 230, 942
Kzo9I	GATC	6 cut(s)	650, 757, 836, 927, 995, 1093
LmnI	GCTCC	7 cut(s)	103, 196, 469, 724, 950, 958, 1024
Lsp1109I	GCAGC	8 cut(s)	79, 82, 157, 338, 341, 439, 746, 1028
LweI	GCATC	2 cut(s)	847, 1085
MaeI	CTAG	3 cut(s)	347, 807, 999
MaeII	ACGT	1 cut(s)	905
MaeIII	GTNAC	4 cut(s)	268, 789, 867, 901
MalI	GATC	6 cut(s)	652, 759, 838, 929, 997, 1095
MboI	GATC	6 cut(s)	650, 757, 836, 927, 995, 1093
MboII	GAAGA	7 cut(s)	60, 153, 156, 269, 676, 857, 866
MfeI	CAATTG	1 cut(s)	591
MflI	RGATCY	2 cut(s)	650, 1093
MhlI	GDGCHC	4 cut(s)	37, 550, 955, 965
MluCI	AATT	6 cut(s)	185, 305, 591, 879, 1050, 1106
MlyI	GAGTC	1 cut(s)	776
MnlI	CCTC	5 cut(s)	96, 349, 932, 1047, 1139
Mph1103I	ATGCAT	1 cut(s)	1078
MseI	TTAA	5 cut(s)	188, 407, 506, 566, 863
MspA1I	CMGCKG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	25
MunI	CAATTG	1 cut(s)	591
MvaI	CCWGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	4 cut(s)	359, 461, 725, 734
NdeII	GATC	6 cut(s)	650, 757, 836, 927, 995, 1093
NlaIII	CATG	3 cut(s)	20, 230, 942
NlaIV	GGNNCC	1 cut(s)	198
NmeAIII	GCCGAG	1 cut(s)	668
NmuCI	GTSAC	1 cut(s)	867
NsiI	ATGCAT	1 cut(s)	1078
NspI	RCATGY	1 cut(s)	942
PagI	TCATGA	1 cut(s)	226
PciI	ACATGT	1 cut(s)	938
PcsI	WCGNNNNNNNCGW	2 cut(s)	695, 911
PfeI	GAWTC	3 cut(s)	485, 803, 1154
PflFI	GACNNNGTC	1 cut(s)	493
PkrI	GCNGC	9 cut(s)	94, 97, 172, 328, 331, 454, 736, 1018, 1114
PleI	GAGTC	1 cut(s)	776
PpsI	GAGTC	1 cut(s)	776
Ppu21I	YACGTR	1 cut(s)	906
PscI	ACATGT	1 cut(s)	938
Psp124BI	GAGCTC	1 cut(s)	955
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	198
PstNI	CAGNNNCTG	1 cut(s)	1022
PsuI	RGATCY	2 cut(s)	650, 1093
PsyI	GACNNNGTC	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	2 cut(s)	701, 908
RsaNI	GTAC	2 cut(s)	700, 907
SacI	GAGCTC	1 cut(s)	955
SaqAI	TTAA	5 cut(s)	188, 407, 506, 566, 863
SatI	GCNGC	9 cut(s)	93, 96, 171, 327, 330, 453, 735, 1017, 1113
Sau3AI	GATC	6 cut(s)	650, 757, 836, 927, 995, 1093
SchI	GAGTC	1 cut(s)	776
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	4 cut(s)	37, 550, 955, 965
SfaNI	GCATC	2 cut(s)	847, 1085
SfcI	CTRYAG	2 cut(s)	418, 604
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
SnaBI	TACGTA	1 cut(s)	906
Sse9I	AATT	6 cut(s)	185, 305, 591, 879, 1050, 1106
SsiI	CCGC	2 cut(s)	344, 1113
SspMI	CTAG	3 cut(s)	347, 807, 999
SstI	GAGCTC	1 cut(s)	955
StyD4I	CCNGG	1 cut(s)	23
StyI	CCWWGG	2 cut(s)	663, 821
TaaI	ACNGT	7 cut(s)	41, 148, 422, 552, 754, 771, 1030
TaiI	ACGT	1 cut(s)	908
TaqI	TCGA	5 cut(s)	281, 488, 674, 930, 990
TaqII	GACCGA	1 cut(s)	1008
TasI	AATT	6 cut(s)	185, 305, 591, 879, 1050, 1106
TauI	GCSGC	1 cut(s)	1115
TfiI	GAWTC	3 cut(s)	485, 803, 1154
Tru1I	TTAA	5 cut(s)	188, 407, 506, 566, 863
Tru9I	TTAA	5 cut(s)	188, 407, 506, 566, 863
TseFI	GTSAC	1 cut(s)	867
TseI	GCWGC	8 cut(s)	92, 95, 170, 326, 329, 452, 734, 1016
Tsp45I	GTSAC	1 cut(s)	867
TspDTI	ATGAA	8 cut(s)	33, 354, 440, 498, 525, 762, 867, 1036
TspGWI	ACGGA	2 cut(s)	945, 986
Tth111I	GACNNNGTC	1 cut(s)	493
VneI	GTGCAC	1 cut(s)	33
XapI	RAATTY	2 cut(s)	305, 879
XceI	RCATGY	1 cut(s)	942
XspI	CTAG	3 cut(s)	347, 807, 999
Zsp2I	ATGCAT	1 cut(s)	1078

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.