Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008987

Physical Location & Seq

Genomic Coordinates Forward (+)

912576 .. 913821

Gene Structure 1246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g01110.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCCATTTTTAACTAGGGGATATCATATTGCAGGATTGCAGCCATCAAGGCGCAGATCCCTCTTTACTTTGGTTGATCCATTTCTACGGTTGGTTGATGATCGCAAATTGCAAGCTATCAATTCTGGAGCTGACCAAGTAAGGAAAGTTTATGGGTCAAAAGAAGATGATGAGGATGCTTTAAGGTCACTTTCTGCTATAGAAAAATCTGAGAGCCAATTCAAGGAATCATATGCTACCATGATAGTGCAGACGCTTAGAAATTCACCAAATGTAAACTTCCTATCACATTATGATTATCTGAACCTTGATTCATCAATTATAAAACAGCAGTTGCTTAATGTTTTTCTGCCTGATGATGCATGTCCACTGGGAGCTCCGTTGAACATGGAAACACCCAGAGAAATCGACCAAGTTGGCGTACAAGATGATGGAGAACCTGATAAGGCGGAGCCCCCATTATTCACAATTGGGGATGATGCACCCAATGCATCTGAAAATCAAACCGACCCTGGCACAAAAGTGGCAGTGGAAAGTTTAAGCATAATAAGCGTTGATCAGCTTTTAGACTCGTTTTTGGAGACAACACATCAAGTTGGAAGATTATCAGTCTCAGCTGCTACAAATATGCCGTACATGGAAATGGCTGGCCAGTGTGAGGCTATTCAAATGGGGAAGCAGCAGAAGTTGTCAACGTTTATGGTTTCCCAGCAGAGACAAGAAAGCATGTTAATTTGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.48

Weight (kDa)

4.63

Isoelectric Point (pI)

54.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008987)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21080
fragaria_vesca	FvH4_7g01250
malus_domestica	MD02G1309100.v1.1 MD07G1013500.v1.1 MD07G1017100.v1.1
prunus_persica	Prupe.2G016800_v2.0.a1 Prupe.2G016800_v2.0.a1
pyrus_communis	pycom03g10630 pycom07g01100 pycom07g01110
rosa_chinensis	RchiOBHm_Chr1g0317001
rosa_laevigata	RLG00000030634
rosa_multiflora	Rmu_sc0002278.1_g000001 Rmu_sc0009007.1_g000001
rosa_roxburghii	Rroxscaffold_4G00330750
rosa_rugosa	Rorug01G0013600.1 Rorug01G0013700 Rorug01G0013700
rosa_samantha	Rh1AG024800 Rh1BG021600 Rh1CG023200 Rh1DG022000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	323
AciI	CCGC	1 cut(s)	449
AclI	AACGTT	1 cut(s)	695
AclWI	GGATC	2 cut(s)	51, 71
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	1 cut(s)	262
AfaI	GTAC	2 cut(s)	423, 635
AfiI	CCNNNNNNNGG	2 cut(s)	223, 658
AgsI	TTSAA	3 cut(s)	223, 385, 668
AjnI	CCWGG	1 cut(s)	511
AleI	CACNNNNGTG	1 cut(s)	521
AluBI	AGCT	5 cut(s)	116, 131, 377, 562, 617
AluI	AGCT	5 cut(s)	116, 131, 377, 562, 617
Alw21I	GWGCWC	1 cut(s)	379
Alw26I	GTCTC	3 cut(s)	575, 616, 709
AlwI	GGATC	2 cut(s)	51, 71
AoxI	GGCC	1 cut(s)	649
ApeKI	GCWGC	3 cut(s)	40, 617, 679
ApoI	RAATTY	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	258
BalI	TGGCCA	1 cut(s)	651
BanII	GRGCYC	2 cut(s)	379, 456
Bbv12I	GWGCWC	1 cut(s)	379
BbvI	GCAGC	3 cut(s)	52, 604, 691
BccI	CCATC	2 cut(s)	52, 425
BceAI	ACGGC	1 cut(s)	616
BciT130I	CCWGG	1 cut(s)	513
BclI	TGATCA	1 cut(s)	556
BcoDI	GTCTC	3 cut(s)	575, 616, 709
BfaI	CTAG	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	198
BglI	GCCNNNNNGGC	1 cut(s)	49
BisI	GCNGC	3 cut(s)	41, 618, 680
BlsI	GCNGC	3 cut(s)	42, 619, 681
Bme1390I	CCNGG	1 cut(s)	513
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	1 cut(s)	513
BmrI	ACTGGG	1 cut(s)	380
BmsI	GCATC	4 cut(s)	166, 349, 469, 500
BmuI	ACTGGG	1 cut(s)	380
BpmI	CTGGAG	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	511
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 658
Bse1I	ACTGG	2 cut(s)	375, 652
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	2 cut(s)	181, 481
BseLI	CCNNNNNNNGG	2 cut(s)	223, 658
BseMII	CTCAG	2 cut(s)	201, 627
BseNI	ACTGG	2 cut(s)	375, 652
BseXI	GCAGC	3 cut(s)	52, 604, 691
BseYI	CCCAGC	1 cut(s)	708
BsgI	GTGCAG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	651
BsiHKAI	GWGCWC	1 cut(s)	379
BslI	CCNNNNNNNGG	2 cut(s)	223, 658
BsmAI	GTCTC	3 cut(s)	575, 616, 709
BsnI	GGCC	1 cut(s)	651
Bsp1286I	GDGCHC	2 cut(s)	379, 456
Bsp143I	GATC	4 cut(s)	56, 76, 100, 556
BspACI	CCGC	1 cut(s)	449
BspANI	GGCC	1 cut(s)	651
BspCNI	CTCAG	2 cut(s)	202, 626
BspLI	GGNNCC	1 cut(s)	453
BspPI	GGATC	2 cut(s)	51, 71
BsrI	ACTGG	2 cut(s)	375, 652
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	4 cut(s)	56, 76, 100, 556
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstC8I	GCNNGC	2 cut(s)	114, 649
BstDEI	CTNAG	3 cut(s)	210, 257, 613
BstF5I	GGATG	2 cut(s)	181, 481
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	4 cut(s)	59, 79, 103, 559
BstMAI	GTCTC	3 cut(s)	575, 616, 709
BstMBI	GATC	4 cut(s)	56, 76, 100, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 488, 549
BstNI	CCWGG	1 cut(s)	513
BstNSI	RCATGY	2 cut(s)	366, 730
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	3 cut(s)	52, 604, 691
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	651
BtsCI	GGATG	2 cut(s)	181, 481
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	3 cut(s)	368, 534, 659
Cac8I	GCNNGC	2 cut(s)	114, 649
CfoI	GCGC	1 cut(s)	54
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	422, 634
CviAII	CATG	5 cut(s)	241, 363, 388, 637, 727
CviQI	GTAC	2 cut(s)	422, 634
DdeI	CTNAG	3 cut(s)	210, 257, 613
DpnI	GATC	4 cut(s)	58, 78, 102, 558
DpnII	GATC	4 cut(s)	56, 76, 100, 556
EaeI	YGGCCR	1 cut(s)	649
EciI	GGCGGA	1 cut(s)	464
Ecl136II	GAGCTC	1 cut(s)	377
Eco24I	GRGCYC	2 cut(s)	379, 456
Eco32I	GATATC	1 cut(s)	23
Eco53kI	GAGCTC	1 cut(s)	377
EcoICRI	GAGCTC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	511
EcoRV	GATATC	1 cut(s)	23
EcoT22I	ATGCAT	2 cut(s)	364, 493
EcoT38I	GRGCYC	2 cut(s)	379, 456
FaeI	CATG	5 cut(s)	244, 366, 391, 640, 730
FatI	CATG	5 cut(s)	240, 362, 387, 636, 726
FauNDI	CATATG	1 cut(s)	232
FbaI	TGATCA	1 cut(s)	556
Fnu4HI	GCNGC	3 cut(s)	41, 618, 680
FokI	GGATG	2 cut(s)	188, 488
FriOI	GRGCYC	2 cut(s)	379, 456
Fsp4HI	GCNGC	3 cut(s)	41, 618, 680
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	3 cut(s)	41, 618, 680
GsaI	CCCAGC	1 cut(s)	712
GsuI	CTGGAG	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	651
HgaI	GACGC	1 cut(s)	262
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	5 cut(s)	244, 366, 391, 640, 730
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	693
HindII	GTYRAC	1 cut(s)	693
HinfI	GANTC	3 cut(s)	227, 311, 569
HphI	GGTGA	1 cut(s)	258
Hpy166II	GTNNAC	3 cut(s)	277, 368, 693
Hpy188I	TCNGA	3 cut(s)	211, 303, 496
Hpy188III	TCNNGA	1 cut(s)	126
Hpy8I	GTNNAC	3 cut(s)	277, 368, 693
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4IV	ACGT	1 cut(s)	695
HpyCH4V	TGCA	7 cut(s)	32, 40, 112, 250, 362, 482, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 488, 549
HpyF3I	CTNAG	3 cut(s)	210, 257, 613
HpySE526I	ACGT	1 cut(s)	695
Hsp92II	CATG	5 cut(s)	244, 366, 391, 640, 730
HspAI	GCGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	556
Kzo9I	GATC	4 cut(s)	56, 76, 100, 556
LmnI	GCTCC	4 cut(s)	128, 374, 382, 451
Lsp1109I	GCAGC	3 cut(s)	52, 604, 691
LweI	GCATC	4 cut(s)	166, 349, 469, 500
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	695
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	4 cut(s)	58, 78, 102, 558
MboI	GATC	4 cut(s)	56, 76, 100, 556
MboII	GAAGA	2 cut(s)	176, 612
MfeI	CAATTG	1 cut(s)	468
MflI	RGATCY	1 cut(s)	56
MhlI	GDGCHC	2 cut(s)	379, 456
MlsI	TGGCCA	1 cut(s)	651
MluCI	AATT	7 cut(s)	107, 121, 218, 262, 318, 468, 732
MluNI	TGGCCA	1 cut(s)	651
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	1 cut(s)	577
MnlI	CCTC	3 cut(s)	71, 166, 652
Mox20I	TGGCCA	1 cut(s)	651
Mph1103I	ATGCAT	2 cut(s)	364, 493
MscI	TGGCCA	1 cut(s)	651
MseI	TTAA	5 cut(s)	11, 182, 339, 539, 731
MslI	CAYNNNNRTG	3 cut(s)	245, 521, 641
Msp20I	TGGCCA	1 cut(s)	651
MspA1I	CMGCKG	1 cut(s)	617
MspR9I	CCNGG	1 cut(s)	513
MunI	CAATTG	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	3 cut(s)	49, 488, 549
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	4 cut(s)	56, 76, 100, 556
NlaIII	CATG	5 cut(s)	244, 366, 391, 640, 730
NlaIV	GGNNCC	1 cut(s)	453
NmuCI	GTSAC	1 cut(s)	186
NsiI	ATGCAT	2 cut(s)	364, 493
NspI	RCATGY	2 cut(s)	366, 730
OliI	CACNNNNGTG	1 cut(s)	521
PfeI	GAWTC	2 cut(s)	227, 311
PkrI	GCNGC	3 cut(s)	42, 619, 681
PleI	GAGTC	1 cut(s)	563
PpsI	GAGTC	1 cut(s)	563
PsiI	TTATAA	1 cut(s)	323
Psp124BI	GAGCTC	1 cut(s)	379
Psp1406I	AACGTT	1 cut(s)	695
Psp6I	CCWGG	1 cut(s)	511
PspFI	CCCAGC	1 cut(s)	708
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	453
PsuI	RGATCY	1 cut(s)	56
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	2 cut(s)	423, 635
RsaNI	GTAC	2 cut(s)	422, 634
RseI	CAYNNNNRTG	3 cut(s)	245, 521, 641
SacI	GAGCTC	1 cut(s)	379
SaqAI	TTAA	5 cut(s)	11, 182, 339, 539, 731
SatI	GCNGC	3 cut(s)	41, 618, 680
Sau3AI	GATC	4 cut(s)	56, 76, 100, 556
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	2 cut(s)	379, 456
SetI	ASST	9 cut(s)	118, 133, 188, 309, 379, 442, 564, 619, 698
SfaNI	GCATC	4 cut(s)	166, 349, 469, 500
SfcI	CTRYAG	1 cut(s)	198
SmiMI	CAYNNNNRTG	3 cut(s)	245, 521, 641
Sse9I	AATT	7 cut(s)	107, 121, 218, 262, 318, 468, 732
SsiI	CCGC	1 cut(s)	449
SspMI	CTAG	1 cut(s)	15
SstI	GAGCTC	1 cut(s)	379
StyD4I	CCNGG	1 cut(s)	511
TaaI	ACNGT	1 cut(s)	90
TaiI	ACGT	1 cut(s)	698
TaqI	TCGA	1 cut(s)	408
TasI	AATT	7 cut(s)	107, 121, 218, 262, 318, 468, 732
TfiI	GAWTC	2 cut(s)	227, 311
Tru1I	TTAA	5 cut(s)	11, 182, 339, 539, 731
Tru9I	TTAA	5 cut(s)	11, 182, 339, 539, 731
TscAI	CASTG	3 cut(s)	375, 534, 659
TseFI	GTSAC	1 cut(s)	186
TseI	GCWGC	3 cut(s)	40, 617, 679
Tsp45I	GTSAC	1 cut(s)	186
TspDTI	ATGAA	1 cut(s)	303
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	3 cut(s)	375, 534, 659
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	2 cut(s)	366, 730
XspI	CTAG	1 cut(s)	15
Zsp2I	ATGCAT	2 cut(s)	364, 493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.