hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G55850 AT3G55850 AT3G55850 AT3G55850 AT3G55850 AT3G55850 |
| fragaria_vesca | FvH4_7g03070 |
| malus_domestica | MD07G1040200.v1.1 |
| prunus_persica | Prupe.2G036100_v2.0.a1 |
| pyrus_communis | pycom07g02780 |
| rosa_chinensis | RchiOBHm_Chr1g0324291 |
| rosa_laevigata | RLG00000030207 |
| rosa_multiflora | Rmu_sc0001850.1_g000050 Rmu_sc0031226.1_g000001 |
| rosa_roxburghii | Rroxscaffold_159G00432670 Rroxscaffold_4G00325720 |
| rosa_rugosa | Rorug01G0044600 Rorug01G0044700 Rorug01G0044800 |
| rosa_samantha | Rh1AG060700 Rh1BG051900 Rh1CG063000 Rh1DG067400 Rh4AG012000 |
| rosa_wichuraiana | Rw1G005170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 229, 602 |
| AccBSI | CCGCTC | 1 cut(s) | 706 |
| AccII | CGCG | 1 cut(s) | 1560 |
| AciI | CCGC | 7 cut(s) | 79, 107, 379, 470, 627, 706, 963 |
| AclWI | GGATC | 5 cut(s) | 1150, 1209, 1353, 1366, 1594 |
| AcoI | YGGCCR | 2 cut(s) | 67, 529 |
| AcsI | RAATTY | 3 cut(s) | 5, 368, 580 |
| AcuI | CTGAAG | 3 cut(s) | 1097, 1266, 1677 |
| AfaI | GTAC | 6 cut(s) | 15, 937, 1169, 1287, 1541, 1698 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 229, 602, 747, 1445, 1482, 1483 |
| AflII | CTTAAG | 1 cut(s) | 560 |
| AflIII | ACRYGT | 1 cut(s) | 1164 |
| AgsI | TTSAA | 6 cut(s) | 999, 1081, 1185, 1372, 1534, 1676 |
| AjiI | CACGTC | 1 cut(s) | 301 |
| AjnI | CCWGG | 6 cut(s) | 222, 280, 787, 809, 1240, 1477 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 582, 614 |
| AluBI | AGCT | 7 cut(s) | 253, 593, 667, 716, 974, 1556, 1655 |
| AluI | AGCT | 7 cut(s) | 253, 593, 667, 716, 974, 1556, 1655 |
| Alw21I | GWGCWC | 3 cut(s) | 255, 1009, 1299 |
| Alw26I | GTCTC | 6 cut(s) | 25, 102, 156, 887, 1079, 1429 |
| Alw44I | GTGCAC | 1 cut(s) | 1005 |
| AlwI | GGATC | 5 cut(s) | 1150, 1209, 1353, 1366, 1594 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 873 |
| Ama87I | CYCGRG | 1 cut(s) | 1268 |
| AoxI | GGCC | 3 cut(s) | 67, 529, 1701 |
| ApaLI | GTGCAC | 1 cut(s) | 1005 |
| ApeKI | GCWGC | 1 cut(s) | 1553 |
| ApoI | RAATTY | 3 cut(s) | 5, 368, 580 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1078, 1110 |
| AseI | ATTAAT | 1 cut(s) | 1434 |
| AspLEI | GCGC | 1 cut(s) | 1562 |
| AsuC2I | CCSGG | 1 cut(s) | 66 |
| AsuHPI | GGTGA | 5 cut(s) | 130, 874, 905, 1148, 1274 |
| AvaI | CYCGRG | 1 cut(s) | 1268 |
| BaeGI | GKGCMC | 1 cut(s) | 1009 |
| BalI | TGGCCA | 1 cut(s) | 531 |
| BamHI | GGATCC | 1 cut(s) | 1358 |
| BanII | GRGCYC | 2 cut(s) | 255, 1351 |
| BauI | CACGAG | 1 cut(s) | 139 |
| Bbv12I | GWGCWC | 3 cut(s) | 255, 1009, 1299 |
| BbvI | GCAGC | 1 cut(s) | 1565 |
| BccI | CCATC | 8 cut(s) | 312, 322, 429, 517, 521, 685, 853, 977 |
| BceAI | ACGGC | 2 cut(s) | 32, 1634 |
| BciT130I | CCWGG | 6 cut(s) | 224, 282, 789, 811, 1242, 1479 |
| BciVI | GTATCC | 1 cut(s) | 1480 |
| BclI | TGATCA | 1 cut(s) | 864 |
| BcnI | CCSGG | 1 cut(s) | 66 |
| BcoDI | GTCTC | 6 cut(s) | 25, 102, 156, 887, 1079, 1429 |
| BfaI | CTAG | 1 cut(s) | 1235 |
| BfrI | CTTAAG | 1 cut(s) | 560 |
| BfuI | GTATCC | 1 cut(s) | 1480 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 537 |
| BisI | GCNGC | 2 cut(s) | 471, 1554 |
| BlsI | GCNGC | 2 cut(s) | 472, 1555 |
| Bme1390I | CCNGG | 7 cut(s) | 66, 224, 282, 789, 811, 1242, 1479 |
| BmeT110I | CYCGRG | 1 cut(s) | 1268 |
| BmgBI | CACGTC | 1 cut(s) | 301 |
| BmiI | GGNNCC | 1 cut(s) | 1360 |
| BmrFI | CCNGG | 7 cut(s) | 66, 224, 282, 789, 811, 1242, 1479 |
| BmrI | ACTGGG | 1 cut(s) | 1001 |
| BmsI | GCATC | 3 cut(s) | 803, 1636, 1676 |
| BmuI | ACTGGG | 1 cut(s) | 1001 |
| BpmI | CTGGAG | 1 cut(s) | 308 |
| BpuMI | CCSGG | 1 cut(s) | 66 |
| BsaBI | GATNNNNATC | 4 cut(s) | 831, 863, 1434, 1591 |
| BsaI | GGTCTC | 1 cut(s) | 1429 |
| BsaJI | CCNNGG | 8 cut(s) | 171, 280, 788, 810, 888, 1241, 1477, 1629 |
| BsaWI | WCCGGW | 2 cut(s) | 100, 1420 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 200, 230, 884, 914 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 229, 602, 747, 1445, 1482, 1483 |
| Bse1I | ACTGG | 4 cut(s) | 73, 643, 996, 1611 |
| Bse3DI | GCAATG | 3 cut(s) | 666, 1396, 1467 |
| Bse8I | GATNNNNATC | 4 cut(s) | 831, 863, 1434, 1591 |
| BseBI | CCWGG | 6 cut(s) | 224, 282, 789, 811, 1242, 1479 |
| BseDI | CCNNGG | 8 cut(s) | 171, 280, 788, 810, 888, 1241, 1477, 1629 |
| BseGI | GGATG | 5 cut(s) | 440, 528, 532, 677, 1648 |
| BseJI | GATNNNNATC | 4 cut(s) | 831, 863, 1434, 1591 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 229, 602, 747, 1445, 1482, 1483 |
| BseMI | GCAATG | 3 cut(s) | 666, 1396, 1467 |
| BseMII | CTCAG | 2 cut(s) | 365, 932 |
| BseNI | ACTGG | 4 cut(s) | 73, 643, 996, 1611 |
| BseRI | GAGGAG | 2 cut(s) | 205, 716 |
| BseSI | GKGCMC | 1 cut(s) | 1009 |
| BseXI | GCAGC | 1 cut(s) | 1565 |
| Bsh1236I | CGCG | 1 cut(s) | 1560 |
| BshFI | GGCC | 3 cut(s) | 69, 531, 1703 |
| BsiHKAI | GWGCWC | 3 cut(s) | 255, 1009, 1299 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1268 |
| BsiSI | CCGG | 3 cut(s) | 66, 101, 1421 |
| BslFI | GGGAC | 2 cut(s) | 263, 1258 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 229, 602, 747, 1445, 1482, 1483 |
| BsmAI | GTCTC | 6 cut(s) | 25, 102, 156, 887, 1079, 1429 |
| BsmBI | CGTCTC | 1 cut(s) | 25 |
| BsmFI | GGGAC | 2 cut(s) | 263, 1258 |
| BsnI | GGCC | 3 cut(s) | 69, 531, 1703 |
| Bso31I | GGTCTC | 1 cut(s) | 1429 |
| BsoBI | CYCGRG | 1 cut(s) | 1268 |
| Bsp1286I | GDGCHC | 4 cut(s) | 255, 1009, 1299, 1351 |
| Bsp143I | GATC | 6 cut(s) | 256, 864, 1155, 1201, 1358, 1586 |
| Bsp19I | CCATGG | 1 cut(s) | 171 |
| BspACI | CCGC | 7 cut(s) | 79, 107, 379, 470, 627, 706, 963 |
| BspANI | GGCC | 3 cut(s) | 69, 531, 1703 |
| BspCNI | CTCAG | 2 cut(s) | 366, 933 |
| BspFNI | CGCG | 1 cut(s) | 1560 |
| BspLI | GGNNCC | 1 cut(s) | 1360 |
| BspPI | GGATC | 5 cut(s) | 1150, 1209, 1353, 1366, 1594 |
| BspTI | CTTAAG | 1 cut(s) | 560 |
| BspTNI | GGTCTC | 1 cut(s) | 1429 |
| BsrBI | CCGCTC | 1 cut(s) | 706 |
| BsrDI | GCAATG | 3 cut(s) | 666, 1396, 1467 |
| BsrI | ACTGG | 4 cut(s) | 73, 643, 996, 1611 |
| BssECI | CCNNGG | 8 cut(s) | 171, 280, 788, 810, 888, 1241, 1477, 1629 |
| BssMI | GATC | 6 cut(s) | 256, 864, 1155, 1201, 1358, 1586 |
| BssSI | CACGAG | 1 cut(s) | 139 |
| BssT1I | CCWWGG | 2 cut(s) | 171, 888 |
| Bst2BI | CACGAG | 1 cut(s) | 139 |
| Bst2UI | CCWGG | 6 cut(s) | 224, 282, 789, 811, 1242, 1479 |
| Bst4CI | ACNGT | 6 cut(s) | 763, 906, 1011, 1398, 1577, 1626 |
| Bst6I | CTCTTC | 1 cut(s) | 1082 |
| BstAFI | CTTAAG | 1 cut(s) | 560 |
| BstC8I | GCNNGC | 8 cut(s) | 468, 571, 730, 1052, 1224, 1387, 1558, 1564 |
| BstDEI | CTNAG | 4 cut(s) | 246, 374, 722, 941 |
| BstDSI | CCRYGG | 2 cut(s) | 171, 1629 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 745 |
| BstF5I | GGATG | 5 cut(s) | 440, 528, 532, 677, 1648 |
| BstFNI | CGCG | 1 cut(s) | 1560 |
| BstHHI | GCGC | 1 cut(s) | 1562 |
| BstKTI | GATC | 6 cut(s) | 259, 867, 1158, 1204, 1361, 1589 |
| BstMAI | GTCTC | 6 cut(s) | 25, 102, 156, 887, 1079, 1429 |
| BstMBI | GATC | 6 cut(s) | 256, 864, 1155, 1201, 1358, 1586 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 32, 537, 1127, 1319, 1559 |
| BstNI | CCWGG | 6 cut(s) | 224, 282, 789, 811, 1242, 1479 |
| BstNSI | RCATGY | 3 cut(s) | 1168, 1226, 1566 |
| BstSCI | CCNGG | 7 cut(s) | 64, 222, 280, 787, 809, 1240, 1477 |
| BstSLI | GKGCMC | 1 cut(s) | 1009 |
| BstUI | CGCG | 1 cut(s) | 1560 |
| BstV1I | GCAGC | 1 cut(s) | 1565 |
| BstX2I | RGATCY | 2 cut(s) | 1358, 1586 |
| BstYI | RGATCY | 2 cut(s) | 1358, 1586 |
| BsuI | GTATCC | 1 cut(s) | 1480 |
| BsuRI | GGCC | 3 cut(s) | 69, 531, 1703 |
| BtgI | CCRYGG | 2 cut(s) | 171, 1629 |
| BtrI | CACGTC | 1 cut(s) | 301 |
| BtsCI | GGATG | 5 cut(s) | 440, 528, 532, 677, 1648 |
| BtsI | GCAGTG | 1 cut(s) | 399 |
| BtsIMutI | CAGTG | 8 cut(s) | 80, 399, 558, 989, 1007, 1182, 1503, 1582 |
| Cac8I | GCNNGC | 8 cut(s) | 468, 571, 730, 1052, 1224, 1387, 1558, 1564 |
| CaiI | CAGNNNCTG | 1 cut(s) | 873 |
| CfoI | GCGC | 1 cut(s) | 1562 |
| CseI | GACGC | 1 cut(s) | 1319 |
| Csp6I | GTAC | 6 cut(s) | 14, 936, 1168, 1286, 1540, 1697 |
| CviAII | CATG | 8 cut(s) | 112, 172, 737, 1127, 1165, 1223, 1494, 1563 |
| CviQI | GTAC | 6 cut(s) | 14, 936, 1168, 1286, 1540, 1697 |
| DdeI | CTNAG | 4 cut(s) | 246, 374, 722, 941 |
| DpnI | GATC | 6 cut(s) | 258, 866, 1157, 1203, 1360, 1588 |
| DpnII | GATC | 6 cut(s) | 256, 864, 1155, 1201, 1358, 1586 |
| EaeI | YGGCCR | 2 cut(s) | 67, 529 |
| Eam1104I | CTCTTC | 1 cut(s) | 1082 |
| EarI | CTCTTC | 1 cut(s) | 1082 |
| EciI | GGCGGA | 1 cut(s) | 122 |
| Ecl136II | GAGCTC | 1 cut(s) | 253 |
| Eco130I | CCWWGG | 2 cut(s) | 171, 888 |
| Eco147I | AGGCCT | 1 cut(s) | 1703 |
| Eco24I | GRGCYC | 2 cut(s) | 255, 1351 |
| Eco31I | GGTCTC | 1 cut(s) | 1429 |
| Eco32I | GATATC | 1 cut(s) | 239 |
| Eco53kI | GAGCTC | 1 cut(s) | 253 |
| Eco57I | CTGAAG | 3 cut(s) | 1097, 1266, 1677 |
| Eco88I | CYCGRG | 1 cut(s) | 1268 |
| EcoICRI | GAGCTC | 1 cut(s) | 253 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 745 |
| EcoRII | CCWGG | 6 cut(s) | 222, 280, 787, 809, 1240, 1477 |
| EcoRV | GATATC | 1 cut(s) | 239 |
| EcoT14I | CCWWGG | 2 cut(s) | 171, 888 |
| EcoT38I | GRGCYC | 2 cut(s) | 255, 1351 |
| ErhI | CCWWGG | 2 cut(s) | 171, 888 |
| Esp3I | CGTCTC | 1 cut(s) | 25 |
| FaeI | CATG | 8 cut(s) | 115, 175, 740, 1130, 1168, 1226, 1497, 1566 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 705, 737, 1095, 1127, 1364, 1396 |
| FaqI | GGGAC | 2 cut(s) | 263, 1258 |
| FatI | CATG | 8 cut(s) | 111, 171, 736, 1126, 1164, 1222, 1493, 1562 |
| FauI | CCCGC | 1 cut(s) | 372 |
| FauNDI | CATATG | 3 cut(s) | 534, 1024, 1684 |
| FbaI | TGATCA | 1 cut(s) | 864 |
| Fnu4HI | GCNGC | 2 cut(s) | 471, 1554 |
| FokI | GGATG | 5 cut(s) | 447, 535, 539, 664, 1655 |
| FriOI | GRGCYC | 2 cut(s) | 255, 1351 |
| Fsp4HI | GCNGC | 2 cut(s) | 471, 1554 |
| FspBI | CTAG | 1 cut(s) | 1235 |
| GlaI | GCGC | 1 cut(s) | 1561 |
| GluI | GCNGC | 2 cut(s) | 471, 1554 |
| GsuI | CTGGAG | 1 cut(s) | 308 |
| HaeIII | GGCC | 3 cut(s) | 69, 531, 1703 |
| HapII | CCGG | 3 cut(s) | 66, 101, 1421 |
| HgaI | GACGC | 1 cut(s) | 1319 |
| HhaI | GCGC | 1 cut(s) | 1562 |
| Hin1II | CATG | 8 cut(s) | 115, 175, 740, 1130, 1168, 1226, 1497, 1566 |
| Hin6I | GCGC | 1 cut(s) | 1560 |
| HinP1I | GCGC | 1 cut(s) | 1560 |
| HincII | GTYRAC | 1 cut(s) | 922 |
| HindII | GTYRAC | 1 cut(s) | 922 |
| HindIII | AAGCTT | 2 cut(s) | 665, 972 |
| HpaI | GTTAAC | 1 cut(s) | 922 |
| HpaII | CCGG | 3 cut(s) | 66, 101, 1421 |
| HphI | GGTGA | 5 cut(s) | 130, 874, 905, 1148, 1274 |
| Hpy166II | GTNNAC | 6 cut(s) | 320, 922, 1007, 1265, 1542, 1629 |
| Hpy188III | TCNNGA | 5 cut(s) | 325, 686, 1213, 1270, 1571 |
| Hpy8I | GTNNAC | 6 cut(s) | 320, 922, 1007, 1265, 1542, 1629 |
| Hpy99I | CGWCG | 4 cut(s) | 35, 44, 47, 149 |
| HpyAV | CCTTC | 3 cut(s) | 183, 683, 1528 |
| HpyCH4III | ACNGT | 6 cut(s) | 763, 906, 1011, 1398, 1577, 1626 |
| HpyCH4IV | ACGT | 2 cut(s) | 300, 934 |
| HpyCH4V | TGCA | 4 cut(s) | 1007, 1054, 1493, 1667 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 32, 537, 1127, 1319, 1559 |
| HpyF3I | CTNAG | 4 cut(s) | 246, 374, 722, 941 |
| HpySE526I | ACGT | 2 cut(s) | 300, 934 |
| Hsp92II | CATG | 8 cut(s) | 115, 175, 740, 1130, 1168, 1226, 1497, 1566 |
| HspAI | GCGC | 1 cut(s) | 1560 |
| Ksp22I | TGATCA | 1 cut(s) | 864 |
| KspAI | GTTAAC | 1 cut(s) | 922 |
| Kzo9I | GATC | 6 cut(s) | 256, 864, 1155, 1201, 1358, 1586 |
| LmnI | GCTCC | 3 cut(s) | 250, 598, 703 |
| Lsp1109I | GCAGC | 1 cut(s) | 1565 |
| LweI | GCATC | 3 cut(s) | 803, 1636, 1676 |
| MaeI | CTAG | 1 cut(s) | 1235 |
| MaeII | ACGT | 2 cut(s) | 300, 934 |
| MaeIII | GTNAC | 5 cut(s) | 754, 900, 906, 1057, 1374 |
| MalI | GATC | 6 cut(s) | 258, 866, 1157, 1203, 1360, 1588 |
| MbiI | CCGCTC | 1 cut(s) | 706 |
| MboI | GATC | 6 cut(s) | 256, 864, 1155, 1201, 1358, 1586 |
| MboII | GAAGA | 6 cut(s) | 188, 827, 868, 1069, 1218, 1670 |
| MfeI | CAATTG | 1 cut(s) | 597 |
| MflI | RGATCY | 2 cut(s) | 1358, 1586 |
| MhlI | GDGCHC | 4 cut(s) | 255, 1009, 1299, 1351 |
| MlsI | TGGCCA | 1 cut(s) | 531 |
| MluCI | AATT | 7 cut(s) | 5, 368, 461, 547, 580, 597, 1042 |
| MluNI | TGGCCA | 1 cut(s) | 531 |
| MlyI | GAGTC | 3 cut(s) | 158, 315, 1181 |
| MmeI | TCCRAC | 2 cut(s) | 214, 910 |
| Mox20I | TGGCCA | 1 cut(s) | 531 |
| MscI | TGGCCA | 1 cut(s) | 531 |
| MseI | TTAA | 7 cut(s) | 561, 921, 969, 1161, 1434, 1452, 1711 |
| MslI | CAYNNNNRTG | 2 cut(s) | 116, 1044 |
| Msp20I | TGGCCA | 1 cut(s) | 531 |
| MspA1I | CMGCKG | 2 cut(s) | 470, 627 |
| MspCI | CTTAAG | 1 cut(s) | 560 |
| MspI | CCGG | 3 cut(s) | 66, 101, 1421 |
| MspR9I | CCNGG | 7 cut(s) | 66, 224, 282, 789, 811, 1242, 1479 |
| MunI | CAATTG | 1 cut(s) | 597 |
| MvaI | CCWGG | 6 cut(s) | 224, 282, 789, 811, 1242, 1479 |
| MvnI | CGCG | 1 cut(s) | 1560 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 32, 537, 1127, 1319, 1559 |
| NciI | CCSGG | 1 cut(s) | 66 |
| NcoI | CCATGG | 1 cut(s) | 171 |
| NdeI | CATATG | 3 cut(s) | 534, 1024, 1684 |
| NdeII | GATC | 6 cut(s) | 256, 864, 1155, 1201, 1358, 1586 |
| NlaIII | CATG | 8 cut(s) | 115, 175, 740, 1130, 1168, 1226, 1497, 1566 |
| NlaIV | GGNNCC | 1 cut(s) | 1360 |
| NmuCI | GTSAC | 3 cut(s) | 900, 1057, 1374 |
| NspI | RCATGY | 3 cut(s) | 1168, 1226, 1566 |
| PaeI | GCATGC | 2 cut(s) | 1226, 1566 |
| PceI | AGGCCT | 1 cut(s) | 1703 |
| PciI | ACATGT | 1 cut(s) | 1164 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 39, 45, 51 |
| PfeI | GAWTC | 9 cut(s) | 167, 293, 653, 1209, 1316, 1471, 1498, 1634, 1661 |
| PflFI | GACNNNGTC | 2 cut(s) | 898, 1616 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 229, 602 |
| PfoI | TCCNGGA | 1 cut(s) | 222 |
| PkrI | GCNGC | 2 cut(s) | 472, 1555 |
| PleI | GAGTC | 3 cut(s) | 157, 315, 1180 |
| PpsI | GAGTC | 3 cut(s) | 157, 315, 1180 |
| PscI | ACATGT | 1 cut(s) | 1164 |
| PshBI | ATTAAT | 1 cut(s) | 1434 |
| Psp124BI | GAGCTC | 1 cut(s) | 255 |
| Psp6I | CCWGG | 6 cut(s) | 222, 280, 787, 809, 1240, 1477 |
| PspGI | CCWGG | 6 cut(s) | 222, 280, 787, 809, 1240, 1477 |
| PspN4I | GGNNCC | 1 cut(s) | 1360 |
| PstNI | CAGNNNCTG | 1 cut(s) | 873 |
| PsuI | RGATCY | 2 cut(s) | 1358, 1586 |
| PsyI | GACNNNGTC | 2 cut(s) | 898, 1616 |
| RsaI | GTAC | 6 cut(s) | 15, 937, 1169, 1287, 1541, 1698 |
| RsaNI | GTAC | 6 cut(s) | 14, 936, 1168, 1286, 1540, 1697 |
| RseI | CAYNNNNRTG | 2 cut(s) | 116, 1044 |
| SacI | GAGCTC | 1 cut(s) | 255 |
| SaqAI | TTAA | 7 cut(s) | 561, 921, 969, 1161, 1434, 1452, 1711 |
| SatI | GCNGC | 2 cut(s) | 471, 1554 |
| Sau3AI | GATC | 6 cut(s) | 256, 864, 1155, 1201, 1358, 1586 |
| SchI | GAGTC | 3 cut(s) | 158, 315, 1181 |
| ScrFI | CCNGG | 7 cut(s) | 66, 224, 282, 789, 811, 1242, 1479 |
| SduI | GDGCHC | 4 cut(s) | 255, 1009, 1299, 1351 |
| SfaNI | GCATC | 3 cut(s) | 803, 1636, 1676 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 116, 1044 |
| SmlI | CTYRAG | 1 cut(s) | 560 |
| SmoI | CTYRAG | 1 cut(s) | 560 |
| SphI | GCATGC | 2 cut(s) | 1226, 1566 |
| Sse9I | AATT | 7 cut(s) | 5, 368, 461, 547, 580, 597, 1042 |
| SseBI | AGGCCT | 1 cut(s) | 1703 |
| SsiI | CCGC | 7 cut(s) | 79, 107, 379, 470, 627, 706, 963 |
| SspMI | CTAG | 1 cut(s) | 1235 |
| SstI | GAGCTC | 1 cut(s) | 255 |
| StuI | AGGCCT | 1 cut(s) | 1703 |
| StyD4I | CCNGG | 7 cut(s) | 64, 222, 280, 787, 809, 1240, 1477 |
| StyI | CCWWGG | 2 cut(s) | 171, 888 |
| TaaI | ACNGT | 6 cut(s) | 763, 906, 1011, 1398, 1577, 1626 |
| TaiI | ACGT | 2 cut(s) | 303, 937 |
| TaqI | TCGA | 2 cut(s) | 255, 1204 |
| TasI | AATT | 7 cut(s) | 5, 368, 461, 547, 580, 597, 1042 |
| TatI | WGTACW | 1 cut(s) | 1285 |
| TauI | GCSGC | 1 cut(s) | 473 |
| TfiI | GAWTC | 9 cut(s) | 167, 293, 653, 1209, 1316, 1471, 1498, 1634, 1661 |
| Tru1I | TTAA | 7 cut(s) | 561, 921, 969, 1161, 1434, 1452, 1711 |
| Tru9I | TTAA | 7 cut(s) | 561, 921, 969, 1161, 1434, 1452, 1711 |
| TscAI | CASTG | 8 cut(s) | 80, 399, 558, 996, 1014, 1182, 1510, 1582 |
| TseFI | GTSAC | 3 cut(s) | 900, 1057, 1374 |
| TseI | GCWGC | 1 cut(s) | 1553 |
| Tsp45I | GTSAC | 3 cut(s) | 900, 1057, 1374 |
| TspDTI | ATGAA | 7 cut(s) | 17, 573, 629, 677, 1083, 1115, 1478 |
| TspGWI | ACGGA | 5 cut(s) | 19, 201, 208, 1076, 1646 |
| TspRI | CASTG | 8 cut(s) | 80, 399, 558, 996, 1014, 1182, 1510, 1582 |
| Tth111I | GACNNNGTC | 2 cut(s) | 898, 1616 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 229, 602 |
| Vha464I | CTTAAG | 1 cut(s) | 560 |
| VneI | GTGCAC | 1 cut(s) | 1005 |
| VspI | ATTAAT | 1 cut(s) | 1434 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 745 |
| XapI | RAATTY | 3 cut(s) | 5, 368, 580 |
| XceI | RCATGY | 3 cut(s) | 1168, 1226, 1566 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 230, 311, 474 |
| XspI | CTAG | 1 cut(s) | 1235 |