Rh1BG051900

hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
7217087 .. 7225753
8667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG051900.1

Sequence Viewer

Length: 1539 bp
ATGGCCGTTCGCAACGGAAGGATTCTCCGGATTGGAAGCTACTCCTCAATTCAGGATATGGTAGGGTATGGGACTAAAGAGTTAGATCTTAAGGGAAAAATTGTAGTCCCTGGATTTATTGATTCCCATGTGCATCTGATCTTTGGTGGACTGCAGATGATGCGTGTAGAACTACATGGCATAAACTCAAAAGATGAATTTGTGAAGAGGATCAAAGAAGCTGTGAGAAATGCAAAACAAGGTTCCTGGATTTTGGGCGGTGGATGGAACAATGATCTATGGGGAGGTGAGTTGCCATTGGCTTCTTGGATTGACGATATTACACCTTATAATCCTGTCTTTCTATCAAGCATGGATGGGCATATGAGCTTGGCTAATTCAGTGGCACTCAAGTTGGGTGGGATTACTAAATCATCAGTGGATCCAAATGGTGGAACCATCATGAAAACCACCAGTGGAGAACCTACTGGACTGTTGATTGATTCTGCAATGGAACTCATCCTTCCACTCATTCCAGAGGTCTCAGTAGAGGAGCGGAGGGAAGCTTTGCGTAAAGCCAGCAATCATGCCTTGATGAGGGGTGTGACGACAGTTGTTGACGTTGGTAGATACTTTCCTGGGACTTCTGTAAAAGATTCCTGGGAAGATTTTTCAGATGTGTATCAATGGGCTGATTTGTCAGGGAAGATGACGATCAGGGTCTGCTTATTTTTCCCACTGGAGACTTGGTCACGTTTACGTGATCTTATTAACAATGTTGGCCAATCTATGAGCCAGTGGATTTATTTGGGTGGGGTTAAAGCATTTGCTGATGGGTCTTTGGGTTCTCGTAGCGCACTTTTCTATGAGCCGTATGTTGATGAGCCTCATAATTATGGCTTACAAGTAGGAGATTATGAAAGTCTCCACAACCTGACCTTAGCATCAGATAAAGTTGGGCTTCAGGTTACTATTCATGCTATAGGCGATCGAGCAAATGACTTGATCCTCGACATGTATGAGTCAGTCATTTCAAAAAACGGAGTGAGGGATCGAAGATTCAGGATTGAGCATGCGCAGCATCTGGCACCTGGGACTCCAGCCAGATTTGGTAAACTAGGGATTGTTGCTTCAGTACAGCCAGAGCAACTGTTAGCTGATGCCGAGTCTGTAAACAAAAAGCTTGGGATAGACAGGGCTCAGAGATCTTATTTATTCAAGTCACTCTTGGGTAGCAATGTAGAATTGGCATTTGGCTCCGACTGGCCAGTTGTAGACATTAATCCTTTAGGTGGTATTAAGACGGCAATGAAAAGGATGCCCCCGGCTTGGGATATTGCTTGGGTTCCATCAGAGAGCGTTTCTCTGAATGACTCACTGAAAGCGTATACTCTTTCAGCTGCTCGTGCATGCTTTCTTGACAGTGATCTGGGATCTTTGTCCCCTGGAAAACTGGCAGATTTTGTCGTACTTTCCATATATTCATGGGATGACTTTGTGGCAGAAGGATCTGCATCCATTGACGCAACTTATGTTGGTGGTGTACAAGCCTATCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

512

Amino Acids

56.04

Weight (kDa)

5.56

Isoelectric Point (pI)

34.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amidohydro_3 PF07969 27 - 511 2.4e-84 Amidohydrolase family
Amidohydro_1 PF01979 308 - 507 5.3e-11 Amidohydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 330
Acc16I TGCGCA 1 cut(s) 1056
AccB1I GGYRCC 1 cut(s) 1066
AccB7I CCANNNNNTGG 1 cut(s) 431
AccBSI CCGCTC 1 cut(s) 535
AccI GTMKAC 2 cut(s) 1254, 1367
AccIII TCCGGA 1 cut(s) 27
AciI CCGC 2 cut(s) 258, 535
AclWI GGATC 7 cut(s) 218, 416, 429, 979, 1038, 1420, 1495
AcoI YGGCCR 3 cut(s) 3, 760, 1244
AcsI RAATTY 1 cut(s) 197
AcuI CTGAAG 2 cut(s) 926, 1095
AfaI GTAC 3 cut(s) 1116, 1449, 1524
AfiI CCNNNNNNNGG 5 cut(s) 431, 576, 1271, 1308, 1309
AflII CTTAAG 1 cut(s) 89
AflIII ACRYGT 1 cut(s) 993
AgsI TTSAA 2 cut(s) 1014, 1198
AjnI CCWGG 6 cut(s) 109, 245, 616, 638, 1069, 1423
AjuI GAANNNNNNNTTGG 2 cut(s) 1215, 1247
AluBI AGCT 7 cut(s) 39, 221, 369, 545, 1136, 1162, 1379
AluI AGCT 7 cut(s) 39, 221, 369, 545, 1136, 1162, 1379
Alw26I GTCTC 3 cut(s) 526, 716, 908
AlwI GGATC 7 cut(s) 218, 416, 429, 979, 1038, 1420, 1495
AlwNI CAGNNNCTG 2 cut(s) 702, 1063
Aor13HI TCCGGA 1 cut(s) 27
AoxI GGCC 3 cut(s) 3, 760, 1244
ApeKI GCWGC 2 cut(s) 1057, 1379
ApoI RAATTY 1 cut(s) 197
AseI ATTAAT 1 cut(s) 1260
AspLEI GCGC 2 cut(s) 836, 1057
AsuC2I CCSGG 1 cut(s) 1304
AsuHPI GGTGA 1 cut(s) 299
BalI TGGCCA 2 cut(s) 762, 1246
BamHI GGATCC 1 cut(s) 421
BanI GGYRCC 1 cut(s) 1066
BanII GRGCYC 1 cut(s) 1180
BauI CACGAG 1 cut(s) 1383
BbvI GCAGC 2 cut(s) 1069, 1366
BccI CCATC 5 cut(s) 258, 350, 446, 806, 1336
BceAI ACGGC 2 cut(s) 835, 1299
BciT130I CCWGG 6 cut(s) 111, 247, 618, 640, 1071, 1425
BcnI CCSGG 1 cut(s) 1304
BcoDI GTCTC 3 cut(s) 526, 716, 908
BfaI CTAG 1 cut(s) 1097
BfmI CTRYAG 2 cut(s) 152, 960
BfrI CTTAAG 1 cut(s) 89
BglII AGATCT 2 cut(s) 85, 1184
BisI GCNGC 2 cut(s) 1058, 1380
BlsI GCNGC 2 cut(s) 1059, 1381
Bme1390I CCNGG 7 cut(s) 111, 247, 618, 640, 1071, 1304, 1425
BmiI GGNNCC 6 cut(s) 244, 423, 436, 1068, 1237, 1326
BmrFI CCNGG 7 cut(s) 111, 247, 618, 640, 1071, 1304, 1425
BmsI GCATC 7 cut(s) 142, 150, 932, 1069, 1129, 1287, 1502
BplI GAGNNNNNCTC 2 cut(s) 1327, 1359
BpmI CTGGAG 2 cut(s) 740, 1062
Bpu10I CCTNAGC 1 cut(s) 919
BpuEI CTTGAG 1 cut(s) 374
BpuMI CCSGG 1 cut(s) 1304
BsaAI YACGTR 1 cut(s) 740
BsaBI GATNNNNATC 3 cut(s) 660, 692, 1492
BsaI GGTCTC 1 cut(s) 526
BsaJI CCNNGG 6 cut(s) 109, 617, 639, 1070, 1302, 1423
BsaWI WCCGGW 1 cut(s) 27
BsaXI ACNNNNNCTCC 2 cut(s) 713, 743
Bsc4I CCNNNNNNNGG 5 cut(s) 431, 576, 1271, 1308, 1309
Bse1I ACTGG 7 cut(s) 453, 472, 723, 775, 1247, 1247, 1437
Bse3DI GCAATG 3 cut(s) 495, 1222, 1293
Bse8I GATNNNNATC 3 cut(s) 660, 692, 1492
BseAI TCCGGA 1 cut(s) 27
BseBI CCWGG 6 cut(s) 111, 247, 618, 640, 1071, 1425
BseDI CCNNGG 6 cut(s) 109, 617, 639, 1070, 1302, 1423
BseGI GGATG 6 cut(s) 269, 361, 498, 1302, 1474, 1493
BseJI GATNNNNATC 3 cut(s) 660, 692, 1492
BseLI CCNNNNNNNGG 5 cut(s) 431, 576, 1271, 1308, 1309
BseMI GCAATG 3 cut(s) 495, 1222, 1293
BseMII CTCAG 2 cut(s) 537, 1193
BseNI ACTGG 7 cut(s) 453, 472, 723, 775, 1247, 1247, 1437
BseRI GAGGAG 2 cut(s) 34, 545
BseXI GCAGC 2 cut(s) 1069, 1366
Bsh1285I CGRYCG 1 cut(s) 970
BshFI GGCC 3 cut(s) 5, 762, 1246
BshNI GGYRCC 1 cut(s) 1066
BsiEI CGRYCG 1 cut(s) 970
BsiSI CCGG 2 cut(s) 28, 1304
BslFI GGGAC 5 cut(s) 85, 92, 634, 1087, 1405
BslI CCNNNNNNNGG 5 cut(s) 431, 576, 1271, 1308, 1309
BsmAI GTCTC 3 cut(s) 526, 716, 908
BsmFI GGGAC 5 cut(s) 85, 92, 634, 1087, 1405
BsnI GGCC 3 cut(s) 5, 762, 1246
Bso31I GGTCTC 1 cut(s) 526
Bsp1286I GDGCHC 1 cut(s) 1180
Bsp13I TCCGGA 1 cut(s) 27
Bsp1407I TGTACA 1 cut(s) 1522
BspACI CCGC 2 cut(s) 258, 535
BspANI GGCC 3 cut(s) 5, 762, 1246
BspCNI CTCAG 2 cut(s) 536, 1192
BspEI TCCGGA 1 cut(s) 27
BspHI TCATGA 1 cut(s) 441
BspLI GGNNCC 6 cut(s) 244, 423, 436, 1068, 1237, 1326
BspMAI CTGCAG 1 cut(s) 156
BspPI GGATC 7 cut(s) 218, 416, 429, 979, 1038, 1420, 1495
BspT107I GGYRCC 1 cut(s) 1066
BspTI CTTAAG 1 cut(s) 89
BspTNI GGTCTC 1 cut(s) 526
BsrBI CCGCTC 1 cut(s) 535
BsrDI GCAATG 3 cut(s) 495, 1222, 1293
BsrGI TGTACA 1 cut(s) 1522
BsrI ACTGG 7 cut(s) 453, 472, 723, 775, 1247, 1247, 1437
BssECI CCNNGG 6 cut(s) 109, 617, 639, 1070, 1302, 1423
BssNAI GTATAC 1 cut(s) 1368
BssSI CACGAG 1 cut(s) 1383
Bst1107I GTATAC 1 cut(s) 1368
Bst2BI CACGAG 1 cut(s) 1383
Bst2UI CCWGG 6 cut(s) 111, 247, 618, 640, 1071, 1425
Bst4CI ACNGT 4 cut(s) 474, 592, 1131, 1403
Bst6I CTCTTC 1 cut(s) 200
BstAFI CTTAAG 1 cut(s) 89
BstAPI GCANNNNNTGC 1 cut(s) 160
BstAUI TGTACA 1 cut(s) 1522
BstBAI YACGTR 1 cut(s) 740
BstC8I GCNNGC 3 cut(s) 559, 1053, 1390
BstDEI CTNAG 3 cut(s) 523, 919, 1179
BstENI CCTNNNNNAGG 1 cut(s) 574
BstF5I GGATG 6 cut(s) 269, 361, 498, 1302, 1474, 1493
BstHHI GCGC 2 cut(s) 836, 1057
BstMAI GTCTC 3 cut(s) 526, 716, 908
BstMCI CGRYCG 1 cut(s) 970
BstMWI GCNNNNNNNGC 3 cut(s) 160, 1057, 1385
BstNI CCWGG 6 cut(s) 111, 247, 618, 640, 1071, 1425
BstNSI RCATGY 3 cut(s) 997, 1055, 1392
BstSCI CCNGG 7 cut(s) 109, 245, 616, 638, 1069, 1302, 1423
BstSFI CTRYAG 2 cut(s) 152, 960
BstV1I GCAGC 2 cut(s) 1069, 1366
BstX2I RGATCY 5 cut(s) 85, 421, 1184, 1412, 1487
BstYI RGATCY 5 cut(s) 85, 421, 1184, 1412, 1487
BstZ17I GTATAC 1 cut(s) 1368
BsuRI GGCC 3 cut(s) 5, 762, 1246
BtsCI GGATG 6 cut(s) 269, 361, 498, 1302, 1474, 1493
BtsIMutI CAGTG 7 cut(s) 387, 423, 460, 716, 782, 1355, 1408
Cac8I GCNNGC 3 cut(s) 559, 1053, 1390
CaiI CAGNNNCTG 2 cut(s) 702, 1063
CciI TCATGA 1 cut(s) 441
CfoI GCGC 2 cut(s) 836, 1057
CseI GACGC 1 cut(s) 1511
Csp6I GTAC 3 cut(s) 1115, 1448, 1523
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviQI GTAC 3 cut(s) 1115, 1448, 1523
DdeI CTNAG 3 cut(s) 523, 919, 1179
EaeI YGGCCR 3 cut(s) 3, 760, 1244
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 1180
Eco31I GGTCTC 1 cut(s) 526
Eco57I CTGAAG 2 cut(s) 926, 1095
EcoNI CCTNNNNNAGG 1 cut(s) 574
EcoRII CCWGG 6 cut(s) 109, 245, 616, 638, 1069, 1423
EcoT38I GRGCYC 1 cut(s) 1180
FalI AAGNNNNNCTT 4 cut(s) 924, 956, 1190, 1222
FaqI GGGAC 5 cut(s) 85, 92, 634, 1087, 1405
FauNDI CATATG 1 cut(s) 363
FblI GTMKAC 2 cut(s) 1254, 1367
Fnu4HI GCNGC 2 cut(s) 1058, 1380
FokI GGATG 6 cut(s) 276, 368, 485, 1309, 1480, 1481
FriOI GRGCYC 1 cut(s) 1180
Fsp4HI GCNGC 2 cut(s) 1058, 1380
FspBI CTAG 1 cut(s) 1097
FspI TGCGCA 1 cut(s) 1056
GlaI GCGC 2 cut(s) 835, 1056
GluI GCNGC 2 cut(s) 1058, 1380
GsuI CTGGAG 2 cut(s) 740, 1062
HaeIII GGCC 3 cut(s) 5, 762, 1246
HapII CCGG 2 cut(s) 28, 1304
HgaI GACGC 1 cut(s) 1511
HhaI GCGC 2 cut(s) 836, 1057
Hin6I GCGC 2 cut(s) 834, 1055
HinP1I GCGC 2 cut(s) 834, 1055
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HindIII AAGCTT 2 cut(s) 543, 1160
HinfI GANTC 9 cut(s) 22, 122, 482, 635, 1001, 1038, 1075, 1145, 1352
HpaII CCGG 2 cut(s) 28, 1304
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 8 cut(s) 149, 598, 737, 1094, 1153, 1255, 1368, 1523
Hpy188I TCNGA 7 cut(s) 138, 655, 928, 1182, 1240, 1333, 1347
Hpy188III TCNNGA 6 cut(s) 28, 53, 442, 515, 1042, 1397
Hpy8I GTNNAC 8 cut(s) 149, 598, 737, 1094, 1153, 1255, 1368, 1523
HpyAV CCTTC 3 cut(s) 12, 512, 1478
HpyCH4III ACNGT 4 cut(s) 474, 592, 1131, 1403
HpyCH4IV ACGT 3 cut(s) 600, 733, 739
HpyCH4V TGCA 6 cut(s) 133, 154, 233, 488, 1388, 1493
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 1057, 1385
HpyF3I CTNAG 3 cut(s) 523, 919, 1179
HpySE526I ACGT 3 cut(s) 600, 733, 739
HspAI GCGC 2 cut(s) 834, 1055
Kpn2I TCCGGA 1 cut(s) 27
LmnI GCTCC 2 cut(s) 532, 1241
Lsp1109I GCAGC 2 cut(s) 1069, 1366
LweI GCATC 7 cut(s) 142, 150, 932, 1069, 1129, 1287, 1502
MaeI CTAG 1 cut(s) 1097
MaeII ACGT 3 cut(s) 600, 733, 739
MaeIII GTNAC 4 cut(s) 583, 729, 946, 1200
MbiI CCGCTC 1 cut(s) 535
MboII GAAGA 4 cut(s) 217, 656, 697, 1047
MflI RGATCY 5 cut(s) 85, 421, 1184, 1412, 1487
MhlI GDGCHC 1 cut(s) 1180
MlsI TGGCCA 2 cut(s) 762, 1246
MluCI AATT 6 cut(s) 48, 99, 197, 376, 871, 1223
MluNI TGGCCA 2 cut(s) 762, 1246
MlyI GAGTC 4 cut(s) 1010, 1069, 1154, 1346
MmeI TCCRAC 1 cut(s) 1263
Mox20I TGGCCA 2 cut(s) 762, 1246
MroI TCCGGA 1 cut(s) 27
MscI TGGCCA 2 cut(s) 762, 1246
MseI TTAA 5 cut(s) 90, 750, 798, 1260, 1278
MslI CAYNNNNRTG 1 cut(s) 873
Msp20I TGGCCA 2 cut(s) 762, 1246
MspA1I CMGCKG 1 cut(s) 1379
MspCI CTTAAG 1 cut(s) 89
MspI CCGG 2 cut(s) 28, 1304
MspR9I CCNGG 7 cut(s) 111, 247, 618, 640, 1071, 1304, 1425
MvaI CCWGG 6 cut(s) 111, 247, 618, 640, 1071, 1425
MwoI GCNNNNNNNGC 3 cut(s) 160, 1057, 1385
NciI CCSGG 1 cut(s) 1304
NdeI CATATG 1 cut(s) 363
NlaIV GGNNCC 6 cut(s) 244, 423, 436, 1068, 1237, 1326
NmeAIII GCCGAG 1 cut(s) 1168
NmuCI GTSAC 3 cut(s) 583, 729, 1200
NsbI TGCGCA 1 cut(s) 1056
NspI RCATGY 3 cut(s) 997, 1055, 1392
PaeI GCATGC 2 cut(s) 1055, 1392
PagI TCATGA 1 cut(s) 441
PciI ACATGT 1 cut(s) 993
PfeI GAWTC 5 cut(s) 22, 122, 482, 635, 1038
PflFI GACNNNGTC 1 cut(s) 727
PflMI CCANNNNNTGG 1 cut(s) 431
PfoI TCCNGGA 1 cut(s) 245
PkrI GCNGC 2 cut(s) 1059, 1381
Ple19I CGATCG 1 cut(s) 970
PleI GAGTC 4 cut(s) 1009, 1069, 1153, 1346
PpsI GAGTC 4 cut(s) 1009, 1069, 1153, 1346
Ppu21I YACGTR 1 cut(s) 740
PscI ACATGT 1 cut(s) 993
PshBI ATTAAT 1 cut(s) 1260
PsiI TTATAA 1 cut(s) 330
Psp6I CCWGG 6 cut(s) 109, 245, 616, 638, 1069, 1423
PspGI CCWGG 6 cut(s) 109, 245, 616, 638, 1069, 1423
PspN4I GGNNCC 6 cut(s) 244, 423, 436, 1068, 1237, 1326
PstI CTGCAG 1 cut(s) 156
PstNI CAGNNNCTG 2 cut(s) 702, 1063
PsuI RGATCY 5 cut(s) 85, 421, 1184, 1412, 1487
PsyI GACNNNGTC 1 cut(s) 727
PvuI CGATCG 1 cut(s) 970
PvuII CAGCTG 1 cut(s) 1379
RsaI GTAC 3 cut(s) 1116, 1449, 1524
RsaNI GTAC 3 cut(s) 1115, 1448, 1523
RseI CAYNNNNRTG 1 cut(s) 873
SaqAI TTAA 5 cut(s) 90, 750, 798, 1260, 1278
SatI GCNGC 2 cut(s) 1058, 1380
SchI GAGTC 4 cut(s) 1010, 1069, 1154, 1346
ScrFI CCNGG 7 cut(s) 111, 247, 618, 640, 1071, 1304, 1425
SduI GDGCHC 1 cut(s) 1180
SfaNI GCATC 7 cut(s) 142, 150, 932, 1069, 1129, 1287, 1502
SfcI CTRYAG 2 cut(s) 152, 960
SmiMI CAYNNNNRTG 1 cut(s) 873
SmlI CTYRAG 2 cut(s) 89, 389
SmoI CTYRAG 2 cut(s) 89, 389
SphI GCATGC 2 cut(s) 1055, 1392
Sse9I AATT 6 cut(s) 48, 99, 197, 376, 871, 1223
SsiI CCGC 2 cut(s) 258, 535
SspMI CTAG 1 cut(s) 1097
StyD4I CCNGG 7 cut(s) 109, 245, 616, 638, 1069, 1302, 1423
TaaI ACNGT 4 cut(s) 474, 592, 1131, 1403
TaiI ACGT 3 cut(s) 603, 736, 742
TaqI TCGA 3 cut(s) 970, 990, 1033
TasI AATT 6 cut(s) 48, 99, 197, 376, 871, 1223
TatI WGTACW 2 cut(s) 1114, 1522
TfiI GAWTC 5 cut(s) 22, 122, 482, 635, 1038
Tru1I TTAA 5 cut(s) 90, 750, 798, 1260, 1278
Tru9I TTAA 5 cut(s) 90, 750, 798, 1260, 1278
TscAI CASTG 7 cut(s) 387, 423, 460, 723, 782, 1362, 1408
TseFI GTSAC 3 cut(s) 583, 729, 1200
TseI GCWGC 2 cut(s) 1057, 1379
Tsp45I GTSAC 3 cut(s) 583, 729, 1200
TspDTI ATGAA 6 cut(s) 210, 458, 912, 944, 1304, 1452
TspGWI ACGGA 3 cut(s) 30, 1035, 1524
TspRI CASTG 7 cut(s) 387, 423, 460, 723, 782, 1362, 1408
Tth111I GACNNNGTC 1 cut(s) 727
Van91I CCANNNNNTGG 1 cut(s) 431
Vha464I CTTAAG 1 cut(s) 89
VspI ATTAAT 1 cut(s) 1260
XagI CCTNNNNNAGG 1 cut(s) 574
XapI RAATTY 1 cut(s) 197
XceI RCATGY 3 cut(s) 997, 1055, 1392
XcmI CCANNNNNNNNNTGG 2 cut(s) 303, 723
XmiI GTMKAC 2 cut(s) 1254, 1367
XspI CTAG 1 cut(s) 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.