hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G55850 AT3G55850 AT3G55850 AT3G55850 AT3G55850 AT3G55850 |
| fragaria_vesca | FvH4_7g03070 |
| malus_domestica | MD07G1040200.v1.1 |
| prunus_persica | Prupe.2G036100_v2.0.a1 |
| pyrus_communis | pycom07g02780 |
| rosa_chinensis | RchiOBHm_Chr1g0324291 |
| rosa_laevigata | RLG00000030207 |
| rosa_multiflora | Rmu_sc0001850.1_g000050 Rmu_sc0031226.1_g000001 |
| rosa_roxburghii | Rroxscaffold_159G00432670 Rroxscaffold_4G00325720 |
| rosa_rugosa | Rorug01G0044600 Rorug01G0044700 Rorug01G0044800 |
| rosa_samantha | Rh1AG060700 Rh1BG051900 Rh1CG063000 Rh1DG067400 Rh4AG012000 |
| rosa_wichuraiana | Rw1G005170 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 843 |
| Acc65I | GGTACC | 1 cut(s) | 251 |
| AccB1I | GGYRCC | 2 cut(s) | 251, 1246 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 611, 1243, 1454 |
| AccBSI | CCGCTC | 1 cut(s) | 715 |
| AccII | CGCG | 1 cut(s) | 343 |
| AccIII | TCCGGA | 1 cut(s) | 694 |
| AciI | CCGC | 5 cut(s) | 116, 190, 195, 388, 715 |
| AclWI | GGATC | 6 cut(s) | 398, 596, 1159, 1218, 1375, 1678 |
| AcoI | YGGCCR | 3 cut(s) | 183, 538, 940 |
| AcsI | RAATTY | 1 cut(s) | 377 |
| AcuI | CTGAAG | 4 cut(s) | 843, 1089, 1106, 1275 |
| AcvI | CACGTG | 1 cut(s) | 310 |
| AfaI | GTAC | 5 cut(s) | 253, 288, 1296, 1550, 1707 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 611, 756, 1099, 1243, 1454, 1491, 1492, 1606 |
| AflIII | ACRYGT | 1 cut(s) | 1173 |
| AgsI | TTSAA | 4 cut(s) | 1531, 1543, 1667, 1685 |
| AjnI | CCWGG | 6 cut(s) | 289, 425, 796, 818, 1486, 1637 |
| AluBI | AGCT | 6 cut(s) | 38, 725, 814, 983, 1562, 1688 |
| AluI | AGCT | 6 cut(s) | 38, 725, 814, 983, 1562, 1688 |
| Alw21I | GWGCWC | 2 cut(s) | 1018, 1308 |
| Alw26I | GTCTC | 7 cut(s) | 111, 165, 896, 1088, 1247, 1389, 1511 |
| Alw44I | GTGCAC | 1 cut(s) | 1014 |
| AlwI | GGATC | 6 cut(s) | 398, 596, 1159, 1218, 1375, 1678 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1243 |
| Aor13HI | TCCGGA | 1 cut(s) | 694 |
| AoxI | GGCC | 6 cut(s) | 183, 480, 538, 940, 1427, 1710 |
| ApaLI | GTGCAC | 1 cut(s) | 1014 |
| ApeKI | GCWGC | 2 cut(s) | 192, 1562 |
| ApoI | RAATTY | 1 cut(s) | 377 |
| AseI | ATTAAT | 1 cut(s) | 1443 |
| Asp718I | GGTACC | 1 cut(s) | 251 |
| AspLEI | GCGC | 1 cut(s) | 343 |
| AspS9I | GGNCC | 1 cut(s) | 1596 |
| AsuC2I | CCSGG | 1 cut(s) | 1608 |
| AsuHPI | GGTGA | 5 cut(s) | 7, 139, 622, 820, 1157 |
| AsuNHI | GCTAGC | 1 cut(s) | 1394 |
| AvaII | GGWCC | 1 cut(s) | 1596 |
| BaeGI | GKGCMC | 1 cut(s) | 1018 |
| BalI | TGGCCA | 2 cut(s) | 540, 942 |
| BanI | GGYRCC | 2 cut(s) | 251, 1246 |
| BanII | GRGCYC | 1 cut(s) | 1360 |
| BauI | CACGAG | 1 cut(s) | 1566 |
| BbrPI | CACGTG | 1 cut(s) | 310 |
| Bbv12I | GWGCWC | 2 cut(s) | 1018, 1308 |
| BbvI | GCAGC | 2 cut(s) | 204, 1549 |
| BccI | CCATC | 7 cut(s) | 242, 331, 438, 472, 526, 530, 986 |
| BceAI | ACGGC | 1 cut(s) | 170 |
| BciT130I | CCWGG | 6 cut(s) | 291, 427, 798, 820, 1488, 1639 |
| BciVI | GTATCC | 1 cut(s) | 1473 |
| BcnI | CCSGG | 1 cut(s) | 1608 |
| BcoDI | GTCTC | 7 cut(s) | 111, 165, 896, 1088, 1247, 1389, 1511 |
| BfaI | CTAG | 3 cut(s) | 1277, 1395, 1616 |
| BfmI | CTRYAG | 2 cut(s) | 33, 1140 |
| BfuI | GTATCC | 1 cut(s) | 1473 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 546 |
| BglII | AGATCT | 1 cut(s) | 265 |
| BisI | GCNGC | 2 cut(s) | 193, 1563 |
| BlsI | GCNGC | 2 cut(s) | 194, 1564 |
| Bme1390I | CCNGG | 7 cut(s) | 291, 427, 798, 820, 1488, 1608, 1639 |
| Bme18I | GGWCC | 1 cut(s) | 1596 |
| BmgT120I | GGNCC | 1 cut(s) | 1596 |
| BmiI | GGNNCC | 5 cut(s) | 253, 424, 1248, 1597, 1598 |
| BmrFI | CCNGG | 7 cut(s) | 291, 427, 798, 820, 1488, 1608, 1639 |
| BmsI | GCATC | 4 cut(s) | 322, 1249, 1309, 1685 |
| BmtI | GCTAGC | 1 cut(s) | 1398 |
| BpmI | CTGGAG | 1 cut(s) | 317 |
| BpuEI | CTTGAG | 1 cut(s) | 554 |
| BpuMI | CCSGG | 1 cut(s) | 1608 |
| BsaAI | YACGTR | 1 cut(s) | 310 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1443, 1675 |
| BsaI | GGTCTC | 3 cut(s) | 111, 1389, 1511 |
| BsaJI | CCNNGG | 8 cut(s) | 180, 255, 797, 819, 1098, 1486, 1607, 1638 |
| BsaWI | WCCGGW | 2 cut(s) | 694, 1380 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 893, 923 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 611, 756, 1099, 1243, 1454, 1491, 1492, 1606 |
| Bse1I | ACTGG | 5 cut(s) | 88, 150, 633, 652, 1430 |
| Bse3DI | GCAATG | 3 cut(s) | 675, 1405, 1476 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1443, 1675 |
| BseAI | TCCGGA | 1 cut(s) | 694 |
| BseBI | CCWGG | 6 cut(s) | 291, 427, 798, 820, 1488, 1639 |
| BseDI | CCNNGG | 8 cut(s) | 180, 255, 797, 819, 1098, 1486, 1607, 1638 |
| BseGI | GGATG | 5 cut(s) | 449, 537, 541, 1657, 1676 |
| BseJI | GATNNNNATC | 2 cut(s) | 1443, 1675 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 611, 756, 1099, 1243, 1454, 1491, 1492, 1606 |
| BseMI | GCAATG | 3 cut(s) | 675, 1405, 1476 |
| BseMII | CTCAG | 4 cut(s) | 1242, 1314, 1373, 1527 |
| BseNI | ACTGG | 5 cut(s) | 88, 150, 633, 652, 1430 |
| BseRI | GAGGAG | 3 cut(s) | 214, 725, 1076 |
| BseSI | GKGCMC | 1 cut(s) | 1018 |
| BseXI | GCAGC | 2 cut(s) | 204, 1549 |
| BseYI | CCCAGC | 2 cut(s) | 578, 1236 |
| Bsh1236I | CGCG | 1 cut(s) | 343 |
| BshFI | GGCC | 6 cut(s) | 185, 482, 540, 942, 1429, 1712 |
| BshNI | GGYRCC | 2 cut(s) | 251, 1246 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1018, 1308 |
| BsiSI | CCGG | 3 cut(s) | 695, 1381, 1607 |
| BslFI | GGGAC | 4 cut(s) | 814, 836, 1582, 1655 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 611, 756, 1099, 1243, 1454, 1491, 1492, 1606 |
| BsmAI | GTCTC | 7 cut(s) | 111, 165, 896, 1088, 1247, 1389, 1511 |
| BsmFI | GGGAC | 4 cut(s) | 814, 836, 1582, 1655 |
| BsnI | GGCC | 6 cut(s) | 185, 482, 540, 942, 1429, 1712 |
| Bso31I | GGTCTC | 3 cut(s) | 111, 1389, 1511 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1018, 1308, 1360 |
| Bsp13I | TCCGGA | 1 cut(s) | 694 |
| Bsp1407I | TGTACA | 1 cut(s) | 1705 |
| Bsp143I | GATC | 8 cut(s) | 265, 390, 454, 601, 1164, 1210, 1367, 1670 |
| Bsp19I | CCATGG | 1 cut(s) | 180 |
| BspACI | CCGC | 5 cut(s) | 116, 190, 195, 388, 715 |
| BspANI | GGCC | 6 cut(s) | 185, 482, 540, 942, 1429, 1712 |
| BspCNI | CTCAG | 4 cut(s) | 1243, 1315, 1372, 1526 |
| BspEI | TCCGGA | 1 cut(s) | 694 |
| BspFNI | CGCG | 1 cut(s) | 343 |
| BspLI | GGNNCC | 5 cut(s) | 253, 424, 1248, 1597, 1598 |
| BspOI | GCTAGC | 1 cut(s) | 1398 |
| BspPI | GGATC | 6 cut(s) | 398, 596, 1159, 1218, 1375, 1678 |
| BspT107I | GGYRCC | 2 cut(s) | 251, 1246 |
| BspTNI | GGTCTC | 3 cut(s) | 111, 1389, 1511 |
| BsrBI | CCGCTC | 1 cut(s) | 715 |
| BsrDI | GCAATG | 3 cut(s) | 675, 1405, 1476 |
| BsrGI | TGTACA | 1 cut(s) | 1705 |
| BsrI | ACTGG | 5 cut(s) | 88, 150, 633, 652, 1430 |
| BssECI | CCNNGG | 8 cut(s) | 180, 255, 797, 819, 1098, 1486, 1607, 1638 |
| BssMI | GATC | 8 cut(s) | 265, 390, 454, 601, 1164, 1210, 1367, 1670 |
| BssSI | CACGAG | 1 cut(s) | 1566 |
| BssT1I | CCWWGG | 3 cut(s) | 180, 255, 1098 |
| Bst2BI | CACGAG | 1 cut(s) | 1566 |
| Bst2UI | CCWGG | 6 cut(s) | 291, 427, 798, 820, 1488, 1639 |
| Bst4CI | ACNGT | 5 cut(s) | 19, 772, 915, 1020, 1635 |
| Bst6I | CTCTTC | 2 cut(s) | 69, 75 |
| BstAUI | TGTACA | 1 cut(s) | 1705 |
| BstBAI | YACGTR | 1 cut(s) | 310 |
| BstC8I | GCNNGC | 4 cut(s) | 739, 1233, 1396, 1573 |
| BstDEI | CTNAG | 4 cut(s) | 1251, 1323, 1359, 1513 |
| BstDSI | CCRYGG | 1 cut(s) | 180 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 754 |
| BstF5I | GGATG | 5 cut(s) | 449, 537, 541, 1657, 1676 |
| BstFNI | CGCG | 1 cut(s) | 343 |
| BstHHI | GCGC | 1 cut(s) | 343 |
| BstKTI | GATC | 8 cut(s) | 268, 393, 457, 604, 1167, 1213, 1370, 1673 |
| BstMAI | GTCTC | 7 cut(s) | 111, 165, 896, 1088, 1247, 1389, 1511 |
| BstMBI | GATC | 8 cut(s) | 265, 390, 454, 601, 1164, 1210, 1367, 1670 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 35, 56, 546, 1136, 1237, 1328, 1544, 1568 |
| BstNI | CCWGG | 6 cut(s) | 291, 427, 798, 820, 1488, 1639 |
| BstNSI | RCATGY | 3 cut(s) | 1177, 1235, 1575 |
| BstSCI | CCNGG | 7 cut(s) | 289, 425, 796, 818, 1486, 1606, 1637 |
| BstSFI | CTRYAG | 2 cut(s) | 33, 1140 |
| BstSLI | GKGCMC | 1 cut(s) | 1018 |
| BstUI | CGCG | 1 cut(s) | 343 |
| BstV1I | GCAGC | 2 cut(s) | 204, 1549 |
| BstX2I | RGATCY | 4 cut(s) | 265, 601, 1367, 1670 |
| BstYI | RGATCY | 4 cut(s) | 265, 601, 1367, 1670 |
| BsuI | GTATCC | 1 cut(s) | 1473 |
| BsuRI | GGCC | 6 cut(s) | 185, 482, 540, 942, 1429, 1712 |
| BtgI | CCRYGG | 1 cut(s) | 180 |
| BtsCI | GGATG | 5 cut(s) | 449, 537, 541, 1657, 1676 |
| BtsI | GCAGTG | 1 cut(s) | 408 |
| BtsIMutI | CAGTG | 5 cut(s) | 157, 408, 640, 1016, 1191 |
| Cac8I | GCNNGC | 4 cut(s) | 739, 1233, 1396, 1573 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1243 |
| CfoI | GCGC | 1 cut(s) | 343 |
| Cfr13I | GGNCC | 1 cut(s) | 1596 |
| CseI | GACGC | 1 cut(s) | 1544 |
| Csp6I | GTAC | 5 cut(s) | 252, 287, 1295, 1549, 1706 |
| CviAII | CATG | 8 cut(s) | 181, 746, 949, 1136, 1174, 1232, 1572, 1647 |
| CviQI | GTAC | 5 cut(s) | 252, 287, 1295, 1549, 1706 |
| DdeI | CTNAG | 4 cut(s) | 1251, 1323, 1359, 1513 |
| DpnI | GATC | 8 cut(s) | 267, 392, 456, 603, 1166, 1212, 1369, 1672 |
| DpnII | GATC | 8 cut(s) | 265, 390, 454, 601, 1164, 1210, 1367, 1670 |
| EaeI | YGGCCR | 3 cut(s) | 183, 538, 940 |
| Eam1104I | CTCTTC | 2 cut(s) | 69, 75 |
| EarI | CTCTTC | 2 cut(s) | 69, 75 |
| EciI | GGCGGA | 2 cut(s) | 131, 403 |
| Eco130I | CCWWGG | 3 cut(s) | 180, 255, 1098 |
| Eco147I | AGGCCT | 1 cut(s) | 1712 |
| Eco24I | GRGCYC | 1 cut(s) | 1360 |
| Eco31I | GGTCTC | 3 cut(s) | 111, 1389, 1511 |
| Eco47I | GGWCC | 1 cut(s) | 1596 |
| Eco57I | CTGAAG | 4 cut(s) | 843, 1089, 1106, 1275 |
| Eco72I | CACGTG | 1 cut(s) | 310 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 754 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1596 |
| EcoRII | CCWGG | 6 cut(s) | 289, 425, 796, 818, 1486, 1637 |
| EcoT14I | CCWWGG | 3 cut(s) | 180, 255, 1098 |
| EcoT38I | GRGCYC | 1 cut(s) | 1360 |
| ErhI | CCWWGG | 3 cut(s) | 180, 255, 1098 |
| FaeI | CATG | 8 cut(s) | 184, 749, 952, 1139, 1177, 1235, 1575, 1650 |
| FaqI | GGGAC | 4 cut(s) | 814, 836, 1582, 1655 |
| FatI | CATG | 8 cut(s) | 180, 745, 948, 1135, 1173, 1231, 1571, 1646 |
| FauNDI | CATATG | 3 cut(s) | 543, 1033, 1693 |
| Fnu4HI | GCNGC | 2 cut(s) | 193, 1563 |
| FokI | GGATG | 5 cut(s) | 456, 544, 548, 1663, 1664 |
| FriOI | GRGCYC | 1 cut(s) | 1360 |
| Fsp4HI | GCNGC | 2 cut(s) | 193, 1563 |
| FspBI | CTAG | 3 cut(s) | 1277, 1395, 1616 |
| GlaI | GCGC | 1 cut(s) | 342 |
| GluI | GCNGC | 2 cut(s) | 193, 1563 |
| GsaI | CCCAGC | 2 cut(s) | 582, 1240 |
| GsuI | CTGGAG | 1 cut(s) | 317 |
| HaeIII | GGCC | 6 cut(s) | 185, 482, 540, 942, 1429, 1712 |
| HapII | CCGG | 3 cut(s) | 695, 1381, 1607 |
| HgaI | GACGC | 1 cut(s) | 1544 |
| HhaI | GCGC | 1 cut(s) | 343 |
| Hin1II | CATG | 8 cut(s) | 184, 749, 952, 1139, 1177, 1235, 1575, 1650 |
| Hin6I | GCGC | 1 cut(s) | 341 |
| HinP1I | GCGC | 1 cut(s) | 341 |
| HincII | GTYRAC | 1 cut(s) | 493 |
| HindII | GTYRAC | 1 cut(s) | 493 |
| HindIII | AAGCTT | 3 cut(s) | 723, 812, 981 |
| HpaII | CCGG | 3 cut(s) | 695, 1381, 1607 |
| HphI | GGTGA | 5 cut(s) | 7, 139, 622, 820, 1157 |
| Hpy166II | GTNNAC | 6 cut(s) | 329, 493, 1016, 1274, 1551, 1706 |
| Hpy188I | TCNGA | 7 cut(s) | 318, 598, 835, 1108, 1362, 1423, 1516 |
| Hpy188III | TCNNGA | 4 cut(s) | 334, 695, 1222, 1580 |
| Hpy8I | GTNNAC | 6 cut(s) | 329, 493, 1016, 1274, 1551, 1706 |
| Hpy99I | CGWCG | 1 cut(s) | 23 |
| HpyAV | CCTTC | 5 cut(s) | 192, 692, 1357, 1537, 1661 |
| HpyCH4III | ACNGT | 5 cut(s) | 19, 772, 915, 1020, 1635 |
| HpyCH4IV | ACGT | 1 cut(s) | 309 |
| HpyCH4V | TGCA | 8 cut(s) | 313, 413, 566, 668, 1016, 1331, 1571, 1676 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 35, 56, 546, 1136, 1237, 1328, 1544, 1568 |
| HpyF3I | CTNAG | 4 cut(s) | 1251, 1323, 1359, 1513 |
| HpySE526I | ACGT | 1 cut(s) | 309 |
| Hsp92II | CATG | 8 cut(s) | 184, 749, 952, 1139, 1177, 1235, 1575, 1650 |
| HspAI | GCGC | 1 cut(s) | 341 |
| KflI | GGGWCCC | 1 cut(s) | 1596 |
| Kpn2I | TCCGGA | 1 cut(s) | 694 |
| KpnI | GGTACC | 1 cut(s) | 255 |
| Kzo9I | GATC | 8 cut(s) | 265, 390, 454, 601, 1164, 1210, 1367, 1670 |
| LmnI | GCTCC | 1 cut(s) | 712 |
| Lsp1109I | GCAGC | 2 cut(s) | 204, 1549 |
| LweI | GCATC | 4 cut(s) | 322, 1249, 1309, 1685 |
| MaeI | CTAG | 3 cut(s) | 1277, 1395, 1616 |
| MaeII | ACGT | 1 cut(s) | 309 |
| MaeIII | GTNAC | 4 cut(s) | 152, 763, 909, 915 |
| MalI | GATC | 8 cut(s) | 267, 392, 456, 603, 1166, 1212, 1369, 1672 |
| MbiI | CCGCTC | 1 cut(s) | 715 |
| MboI | GATC | 8 cut(s) | 265, 390, 454, 601, 1164, 1210, 1367, 1670 |
| MboII | GAAGA | 6 cut(s) | 56, 62, 611, 849, 877, 1227 |
| MfeI | CAATTG | 2 cut(s) | 618, 1406 |
| MflI | RGATCY | 4 cut(s) | 265, 601, 1367, 1670 |
| MhlI | GDGCHC | 3 cut(s) | 1018, 1308, 1360 |
| MlsI | TGGCCA | 2 cut(s) | 540, 942 |
| MluCI | AATT | 6 cut(s) | 377, 470, 556, 618, 1051, 1406 |
| MluNI | TGGCCA | 2 cut(s) | 540, 942 |
| MlyI | GAGTC | 5 cut(s) | 167, 324, 1190, 1334, 1637 |
| MmeI | TCCRAC | 2 cut(s) | 80, 223 |
| Mox20I | TGGCCA | 2 cut(s) | 540, 942 |
| MroI | TCCGGA | 1 cut(s) | 694 |
| MscI | TGGCCA | 2 cut(s) | 540, 942 |
| MseI | TTAA | 5 cut(s) | 95, 231, 978, 1443, 1461 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1053 |
| Msp20I | TGGCCA | 2 cut(s) | 540, 942 |
| MspA1I | CMGCKG | 2 cut(s) | 195, 1562 |
| MspI | CCGG | 3 cut(s) | 695, 1381, 1607 |
| MspR9I | CCNGG | 7 cut(s) | 291, 427, 798, 820, 1488, 1608, 1639 |
| MunI | CAATTG | 2 cut(s) | 618, 1406 |
| MvaI | CCWGG | 6 cut(s) | 291, 427, 798, 820, 1488, 1639 |
| MvnI | CGCG | 1 cut(s) | 343 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 35, 56, 546, 1136, 1237, 1328, 1544, 1568 |
| NciI | CCSGG | 1 cut(s) | 1608 |
| NcoI | CCATGG | 1 cut(s) | 180 |
| NdeI | CATATG | 3 cut(s) | 543, 1033, 1693 |
| NdeII | GATC | 8 cut(s) | 265, 390, 454, 601, 1164, 1210, 1367, 1670 |
| NheI | GCTAGC | 1 cut(s) | 1394 |
| NlaIII | CATG | 8 cut(s) | 184, 749, 952, 1139, 1177, 1235, 1575, 1650 |
| NlaIV | GGNNCC | 5 cut(s) | 253, 424, 1248, 1597, 1598 |
| NmuCI | GTSAC | 2 cut(s) | 152, 763 |
| NspI | RCATGY | 3 cut(s) | 1177, 1235, 1575 |
| PaeI | GCATGC | 2 cut(s) | 1235, 1575 |
| PceI | AGGCCT | 1 cut(s) | 1712 |
| PciI | ACATGT | 1 cut(s) | 1173 |
| PfeI | GAWTC | 7 cut(s) | 176, 302, 627, 662, 854, 1218, 1507 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 611, 1243, 1454 |
| PfoI | TCCNGGA | 1 cut(s) | 425 |
| PkrI | GCNGC | 2 cut(s) | 194, 1564 |
| PleI | GAGTC | 5 cut(s) | 166, 324, 1189, 1333, 1637 |
| PmaCI | CACGTG | 1 cut(s) | 310 |
| PmlI | CACGTG | 1 cut(s) | 310 |
| PpsI | GAGTC | 5 cut(s) | 166, 324, 1189, 1333, 1637 |
| Ppu21I | YACGTR | 1 cut(s) | 310 |
| PpuMI | RGGWCCY | 1 cut(s) | 1596 |
| PscI | ACATGT | 1 cut(s) | 1173 |
| PshBI | ATTAAT | 1 cut(s) | 1443 |
| PsiI | TTATAA | 1 cut(s) | 843 |
| Psp5II | RGGWCCY | 1 cut(s) | 1596 |
| Psp6I | CCWGG | 6 cut(s) | 289, 425, 796, 818, 1486, 1637 |
| PspCI | CACGTG | 1 cut(s) | 310 |
| PspFI | CCCAGC | 2 cut(s) | 578, 1236 |
| PspGI | CCWGG | 6 cut(s) | 289, 425, 796, 818, 1486, 1637 |
| PspN4I | GGNNCC | 5 cut(s) | 253, 424, 1248, 1597, 1598 |
| PspPI | GGNCC | 1 cut(s) | 1596 |
| PspPPI | RGGWCCY | 1 cut(s) | 1596 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1243 |
| PsuI | RGATCY | 4 cut(s) | 265, 601, 1367, 1670 |
| PvuII | CAGCTG | 1 cut(s) | 1562 |
| RsaI | GTAC | 5 cut(s) | 253, 288, 1296, 1550, 1707 |
| RsaNI | GTAC | 5 cut(s) | 252, 287, 1295, 1549, 1706 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1053 |
| SaqAI | TTAA | 5 cut(s) | 95, 231, 978, 1443, 1461 |
| SatI | GCNGC | 2 cut(s) | 193, 1563 |
| Sau3AI | GATC | 8 cut(s) | 265, 390, 454, 601, 1164, 1210, 1367, 1670 |
| Sau96I | GGNCC | 1 cut(s) | 1596 |
| SchI | GAGTC | 5 cut(s) | 167, 324, 1190, 1334, 1637 |
| ScrFI | CCNGG | 7 cut(s) | 291, 427, 798, 820, 1488, 1608, 1639 |
| SduI | GDGCHC | 3 cut(s) | 1018, 1308, 1360 |
| SfaNI | GCATC | 4 cut(s) | 322, 1249, 1309, 1685 |
| SfcI | CTRYAG | 2 cut(s) | 33, 1140 |
| SinI | GGWCC | 1 cut(s) | 1596 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1053 |
| SmlI | CTYRAG | 1 cut(s) | 569 |
| SmoI | CTYRAG | 1 cut(s) | 569 |
| SphI | GCATGC | 2 cut(s) | 1235, 1575 |
| Sse9I | AATT | 6 cut(s) | 377, 470, 556, 618, 1051, 1406 |
| SseBI | AGGCCT | 1 cut(s) | 1712 |
| SsiI | CCGC | 5 cut(s) | 116, 190, 195, 388, 715 |
| SspMI | CTAG | 3 cut(s) | 1277, 1395, 1616 |
| StuI | AGGCCT | 1 cut(s) | 1712 |
| StyD4I | CCNGG | 7 cut(s) | 289, 425, 796, 818, 1486, 1606, 1637 |
| StyI | CCWWGG | 3 cut(s) | 180, 255, 1098 |
| TaaI | ACNGT | 5 cut(s) | 19, 772, 915, 1020, 1635 |
| TaiI | ACGT | 1 cut(s) | 312 |
| TaqI | TCGA | 2 cut(s) | 527, 1213 |
| TasI | AATT | 6 cut(s) | 377, 470, 556, 618, 1051, 1406 |
| TatI | WGTACW | 2 cut(s) | 1294, 1705 |
| TfiI | GAWTC | 7 cut(s) | 176, 302, 627, 662, 854, 1218, 1507 |
| Tru1I | TTAA | 5 cut(s) | 95, 231, 978, 1443, 1461 |
| Tru9I | TTAA | 5 cut(s) | 95, 231, 978, 1443, 1461 |
| TscAI | CASTG | 5 cut(s) | 157, 408, 640, 1023, 1191 |
| TseFI | GTSAC | 2 cut(s) | 152, 763 |
| TseI | GCWGC | 2 cut(s) | 192, 1562 |
| Tsp45I | GTSAC | 2 cut(s) | 152, 763 |
| TspDTI | ATGAA | 8 cut(s) | 17, 390, 582, 686, 1092, 1124, 1487, 1515 |
| TspRI | CASTG | 5 cut(s) | 157, 408, 640, 1023, 1191 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 611, 1243, 1454 |
| VneI | GTGCAC | 1 cut(s) | 1014 |
| VpaK11BI | GGWCC | 1 cut(s) | 1596 |
| VspI | ATTAAT | 1 cut(s) | 1443 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 754 |
| XapI | RAATTY | 1 cut(s) | 377 |
| XceI | RCATGY | 3 cut(s) | 1177, 1235, 1575 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 903 |
| XspI | CTAG | 3 cut(s) | 1277, 1395, 1616 |