RLG00000030207

hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
57533342 .. 57561063
27722 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030207

Sequence Viewer

Length: 1383 bp
ATGATGCGTGTAGAACTACATGGCATAAACTCAAAAGATGAATTTGTGAAGAGGATCAAAGAAGCTGTGAGAAATGCAAAACAAGGTTCCTGGATTTTGGGCGGTGGATGGAACAATGATCTGTGGGGAGGTGAGTTGCCATTGGCTTCTTGGATTGACGATATTACACCTTATAATCCTGTCTTTCTATCAAGAATGGATGGGCATATGAGCTTGGCTAATTCGGTGGCACTCAAGTTGGGTGGGATTACTAAATCATCAGTGGATCCAAATGGTGGAACCATCATGAAAACCACCAGTGGAGAACCTACTGGACTGTTGATTGATTCTGCAATGGAACTTATCCTTCCACTCATTCCAGAGGTCTCAGTAGAGGAGCGGAGGGAAGCTTTGCGTAAAGCCAGCAATCATGCCTTGATGAGGGGTGTGACGACAGTTGTTGACGTTGGTAGATACTTTCCTGGGACTTCTGTAAAAGATTCCTGGGAAGATTTTTCAGATGTGTATCAATGGGCTGATTTGTCAGGGAAGATGACGATCAGGGTCTGCTTATTTTTCCCACTGGAGACTTGGTCACGTTTACGCGATCTTATTAACAATGTTGGCCAATCCATTAGCCAGTGGATTCATTTGGGTGGGGTTAAAGCATTTGCTGATGGGTCTTTGGGTTCTCGTAGCGCACTTTTCTATGAGCCGTATGTTGATGAGCCTCATAATTATGGCTTACAAGTAGGAGATTATGAAAGTCTCCACAACCTGACCTTAGCATCAGATAGAGTTGGGCTTCAGGTTGCTATTCATGCTATAGGCGATCGAGCAAATGACTTGATCCTCGACATGTATGAGTCAGTCATTTCAAAAAACGGAGTGAGGGATCGAAGATTCAGGATTGAGCATGCGCAGCATCTGGCACCTGGGACACCAGCCAGATTCGGTAAACTAGGGATTGTTTCTTCAGTACAGCCAGAGCACCTGTTAGCTGATGCCGAGTCTGTAAACAAAAAGCTTGGGATAGACAGGGCTCAGAGATCTTATTTATTCCAGTCACTCTTGGGTAGCAATGTAGAATTGGCATTTGGCTCCGACTGGCCAGTTGTAGACATTAATCCTTTAGGTGGTATTAAGACGGCAATGAAAAGGATACCCCCGGCCTGGGATAGTGCTTGGGTTCCATCAGAGAGCGTTTCACTGAATGACTCACTGAAAGCGTATACTCTTTCAGCTGCTCGTGCATGCTTTCTTGACAGTGATCTGGGATCTTTGTCCCCTGGAAAACTGGCAGATTTTGTCGTACTTTCCATATATTCATGGGATGACTTTGTGGCAGAAGGATCTGCATCCATTGACGCAACTTATGTTGGTGGTGTACAAGCCTATCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

461

Amino Acids

50.37

Weight (kDa)

5.36

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amidohydro_3 PF07969 8 - 459 1.9e-70 Amidohydrolase family
Amidohydro_1 PF01979 253 - 455 2.3e-10 Amidohydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 174
Acc16I TGCGCA 1 cut(s) 900
AccB1I GGYRCC 1 cut(s) 910
AccB7I CCANNNNNTGG 1 cut(s) 275
AccBSI CCGCTC 1 cut(s) 379
AccI GTMKAC 2 cut(s) 1098, 1211
AccII CGCG 1 cut(s) 585
AciI CCGC 2 cut(s) 102, 379
AclWI GGATC 7 cut(s) 62, 260, 273, 823, 882, 1264, 1339
AcoI YGGCCR 2 cut(s) 604, 1088
AcsI RAATTY 1 cut(s) 41
AcuI CTGAAG 2 cut(s) 770, 939
AfaI GTAC 3 cut(s) 960, 1293, 1368
AfiI CCNNNNNNNGG 5 cut(s) 275, 420, 1115, 1152, 1153
AflIII ACRYGT 1 cut(s) 837
AgsI TTSAA 1 cut(s) 858
AjnI CCWGG 6 cut(s) 89, 460, 482, 913, 1151, 1267
AjuI GAANNNNNNNTTGG 2 cut(s) 1059, 1091
AluBI AGCT 6 cut(s) 65, 213, 389, 980, 1006, 1223
AluI AGCT 6 cut(s) 65, 213, 389, 980, 1006, 1223
Alw21I GWGCWC 1 cut(s) 972
Alw26I GTCTC 3 cut(s) 370, 560, 752
AlwI GGATC 7 cut(s) 62, 260, 273, 823, 882, 1264, 1339
AlwNI CAGNNNCTG 2 cut(s) 546, 907
AoxI GGCC 3 cut(s) 604, 1088, 1149
ApeKI GCWGC 2 cut(s) 901, 1223
ApoI RAATTY 1 cut(s) 41
AseI ATTAAT 1 cut(s) 1104
AspLEI GCGC 2 cut(s) 680, 901
AsuC2I CCSGG 1 cut(s) 1148
AsuHPI GGTGA 1 cut(s) 143
BalI TGGCCA 2 cut(s) 606, 1090
BamHI GGATCC 1 cut(s) 265
BanI GGYRCC 1 cut(s) 910
BanII GRGCYC 1 cut(s) 1024
BauI CACGAG 1 cut(s) 1227
Bbv12I GWGCWC 1 cut(s) 972
BbvI GCAGC 2 cut(s) 913, 1210
BccI CCATC 5 cut(s) 102, 194, 290, 650, 1180
BceAI ACGGC 2 cut(s) 679, 1143
BciT130I CCWGG 6 cut(s) 91, 462, 484, 915, 1153, 1269
BciVI GTATCC 1 cut(s) 1134
BcnI CCSGG 1 cut(s) 1148
BcoDI GTCTC 3 cut(s) 370, 560, 752
BfaI CTAG 1 cut(s) 941
BfmI CTRYAG 1 cut(s) 804
BfuI GTATCC 1 cut(s) 1134
BglII AGATCT 1 cut(s) 1028
BisI GCNGC 2 cut(s) 902, 1224
BlsI GCNGC 2 cut(s) 903, 1225
Bme1390I CCNGG 7 cut(s) 91, 462, 484, 915, 1148, 1153, 1269
BmiI GGNNCC 6 cut(s) 88, 267, 280, 912, 1081, 1170
BmrFI CCNGG 7 cut(s) 91, 462, 484, 915, 1148, 1153, 1269
BmsI GCATC 4 cut(s) 776, 913, 973, 1346
BpmI CTGGAG 1 cut(s) 584
Bpu10I CCTNAGC 1 cut(s) 763
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 1148
BsaBI GATNNNNATC 3 cut(s) 504, 536, 1336
BsaI GGTCTC 1 cut(s) 370
BsaJI CCNNGG 6 cut(s) 461, 483, 914, 1146, 1152, 1267
BsaXI ACNNNNNCTCC 2 cut(s) 557, 587
Bsc4I CCNNNNNNNGG 5 cut(s) 275, 420, 1115, 1152, 1153
Bse1I ACTGG 8 cut(s) 297, 316, 567, 619, 1042, 1091, 1091, 1281
Bse3DI GCAATG 3 cut(s) 339, 1066, 1137
Bse8I GATNNNNATC 3 cut(s) 504, 536, 1336
BseBI CCWGG 6 cut(s) 91, 462, 484, 915, 1153, 1269
BseDI CCNNGG 6 cut(s) 461, 483, 914, 1146, 1152, 1267
BseGI GGATG 4 cut(s) 113, 205, 1318, 1337
BseJI GATNNNNATC 3 cut(s) 504, 536, 1336
BseLI CCNNNNNNNGG 5 cut(s) 275, 420, 1115, 1152, 1153
BseMI GCAATG 3 cut(s) 339, 1066, 1137
BseMII CTCAG 2 cut(s) 381, 1037
BseNI ACTGG 8 cut(s) 297, 316, 567, 619, 1042, 1091, 1091, 1281
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 2 cut(s) 913, 1210
Bsh1236I CGCG 1 cut(s) 585
Bsh1285I CGRYCG 1 cut(s) 814
BshFI GGCC 3 cut(s) 606, 1090, 1151
BshNI GGYRCC 1 cut(s) 910
BsiEI CGRYCG 1 cut(s) 814
BsiHKAI GWGCWC 1 cut(s) 972
BsiSI CCGG 1 cut(s) 1148
BslFI GGGAC 3 cut(s) 478, 931, 1249
BslI CCNNNNNNNGG 5 cut(s) 275, 420, 1115, 1152, 1153
BsmAI GTCTC 3 cut(s) 370, 560, 752
BsmFI GGGAC 3 cut(s) 478, 931, 1249
BsnI GGCC 3 cut(s) 606, 1090, 1151
Bso31I GGTCTC 1 cut(s) 370
Bsp1286I GDGCHC 2 cut(s) 972, 1024
Bsp1407I TGTACA 1 cut(s) 1366
BspACI CCGC 2 cut(s) 102, 379
BspANI GGCC 3 cut(s) 606, 1090, 1151
BspCNI CTCAG 2 cut(s) 380, 1036
BspFNI CGCG 1 cut(s) 585
BspHI TCATGA 1 cut(s) 285
BspLI GGNNCC 6 cut(s) 88, 267, 280, 912, 1081, 1170
BspPI GGATC 7 cut(s) 62, 260, 273, 823, 882, 1264, 1339
BspT107I GGYRCC 1 cut(s) 910
BspTNI GGTCTC 1 cut(s) 370
BsrBI CCGCTC 1 cut(s) 379
BsrDI GCAATG 3 cut(s) 339, 1066, 1137
BsrGI TGTACA 1 cut(s) 1366
BsrI ACTGG 8 cut(s) 297, 316, 567, 619, 1042, 1091, 1091, 1281
BssECI CCNNGG 6 cut(s) 461, 483, 914, 1146, 1152, 1267
BssNAI GTATAC 1 cut(s) 1212
BssSI CACGAG 1 cut(s) 1227
Bst1107I GTATAC 1 cut(s) 1212
Bst2BI CACGAG 1 cut(s) 1227
Bst2UI CCWGG 6 cut(s) 91, 462, 484, 915, 1153, 1269
Bst4CI ACNGT 3 cut(s) 318, 436, 1247
Bst6I CTCTTC 1 cut(s) 44
BstAUI TGTACA 1 cut(s) 1366
BstC8I GCNNGC 3 cut(s) 403, 897, 1234
BstDEI CTNAG 3 cut(s) 367, 763, 1023
BstENI CCTNNNNNAGG 1 cut(s) 418
BstF5I GGATG 4 cut(s) 113, 205, 1318, 1337
BstFNI CGCG 1 cut(s) 585
BstHHI GCGC 2 cut(s) 680, 901
BstMAI GTCTC 3 cut(s) 370, 560, 752
BstMCI CGRYCG 1 cut(s) 814
BstMWI GCNNNNNNNGC 3 cut(s) 800, 901, 1229
BstNI CCWGG 6 cut(s) 91, 462, 484, 915, 1153, 1269
BstNSI RCATGY 3 cut(s) 841, 899, 1236
BstSCI CCNGG 7 cut(s) 89, 460, 482, 913, 1146, 1151, 1267
BstSFI CTRYAG 1 cut(s) 804
BstUI CGCG 1 cut(s) 585
BstV1I GCAGC 2 cut(s) 913, 1210
BstX2I RGATCY 4 cut(s) 265, 1028, 1256, 1331
BstYI RGATCY 4 cut(s) 265, 1028, 1256, 1331
BstZ17I GTATAC 1 cut(s) 1212
BsuI GTATCC 1 cut(s) 1134
BsuRI GGCC 3 cut(s) 606, 1090, 1151
BtsCI GGATG 4 cut(s) 113, 205, 1318, 1337
BtsIMutI CAGTG 7 cut(s) 267, 304, 560, 626, 1187, 1199, 1252
Cac8I GCNNGC 3 cut(s) 403, 897, 1234
CaiI CAGNNNCTG 2 cut(s) 546, 907
CciI TCATGA 1 cut(s) 285
CfoI GCGC 2 cut(s) 680, 901
CseI GACGC 1 cut(s) 1355
Csp6I GTAC 3 cut(s) 959, 1292, 1367
CspCI CAANNNNNGTGG 2 cut(s) 223, 258
CviAII CATG 8 cut(s) 20, 286, 410, 800, 838, 896, 1233, 1308
CviQI GTAC 3 cut(s) 959, 1292, 1367
DdeI CTNAG 3 cut(s) 367, 763, 1023
EaeI YGGCCR 2 cut(s) 604, 1088
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco24I GRGCYC 1 cut(s) 1024
Eco31I GGTCTC 1 cut(s) 370
Eco57I CTGAAG 2 cut(s) 770, 939
EcoNI CCTNNNNNAGG 1 cut(s) 418
EcoRII CCWGG 6 cut(s) 89, 460, 482, 913, 1151, 1267
EcoT38I GRGCYC 1 cut(s) 1024
FaeI CATG 8 cut(s) 23, 289, 413, 803, 841, 899, 1236, 1311
FaqI GGGAC 3 cut(s) 478, 931, 1249
FatI CATG 8 cut(s) 19, 285, 409, 799, 837, 895, 1232, 1307
FauNDI CATATG 1 cut(s) 207
FblI GTMKAC 2 cut(s) 1098, 1211
Fnu4HI GCNGC 2 cut(s) 902, 1224
FokI GGATG 4 cut(s) 120, 212, 1324, 1325
FriOI GRGCYC 1 cut(s) 1024
Fsp4HI GCNGC 2 cut(s) 902, 1224
FspBI CTAG 1 cut(s) 941
FspI TGCGCA 1 cut(s) 900
GlaI GCGC 2 cut(s) 679, 900
GluI GCNGC 2 cut(s) 902, 1224
GsuI CTGGAG 1 cut(s) 584
HaeIII GGCC 3 cut(s) 606, 1090, 1151
HapII CCGG 1 cut(s) 1148
HgaI GACGC 1 cut(s) 1355
HhaI GCGC 2 cut(s) 680, 901
Hin1II CATG 8 cut(s) 23, 289, 413, 803, 841, 899, 1236, 1311
Hin6I GCGC 2 cut(s) 678, 899
HinP1I GCGC 2 cut(s) 678, 899
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HindIII AAGCTT 2 cut(s) 387, 1004
HinfI GANTC 8 cut(s) 326, 479, 625, 845, 882, 930, 989, 1196
HpaII CCGG 1 cut(s) 1148
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 7 cut(s) 442, 581, 938, 997, 1099, 1212, 1367
Hpy188I TCNGA 5 cut(s) 499, 772, 1026, 1084, 1177
Hpy188III TCNNGA 5 cut(s) 192, 286, 359, 886, 1241
Hpy8I GTNNAC 7 cut(s) 442, 581, 938, 997, 1099, 1212, 1367
HpyAV CCTTC 2 cut(s) 356, 1322
HpyCH4III ACNGT 3 cut(s) 318, 436, 1247
HpyCH4IV ACGT 2 cut(s) 444, 577
HpyCH4V TGCA 4 cut(s) 77, 332, 1232, 1337
HpyF10VI GCNNNNNNNGC 3 cut(s) 800, 901, 1229
HpyF3I CTNAG 3 cut(s) 367, 763, 1023
HpySE526I ACGT 2 cut(s) 444, 577
Hsp92II CATG 8 cut(s) 23, 289, 413, 803, 841, 899, 1236, 1311
HspAI GCGC 2 cut(s) 678, 899
LmnI GCTCC 2 cut(s) 376, 1085
Lsp1109I GCAGC 2 cut(s) 913, 1210
LweI GCATC 4 cut(s) 776, 913, 973, 1346
MaeI CTAG 1 cut(s) 941
MaeII ACGT 2 cut(s) 444, 577
MaeIII GTNAC 3 cut(s) 427, 573, 1044
MbiI CCGCTC 1 cut(s) 379
MboII GAAGA 5 cut(s) 61, 500, 541, 891, 945
MflI RGATCY 4 cut(s) 265, 1028, 1256, 1331
MhlI GDGCHC 2 cut(s) 972, 1024
MlsI TGGCCA 2 cut(s) 606, 1090
MluCI AATT 4 cut(s) 41, 220, 715, 1067
MluNI TGGCCA 2 cut(s) 606, 1090
MlyI GAGTC 3 cut(s) 854, 998, 1190
MmeI TCCRAC 1 cut(s) 1107
MnlI CCTC 9 cut(s) 45, 122, 355, 367, 375, 414, 720, 842, 864
Mox20I TGGCCA 2 cut(s) 606, 1090
MscI TGGCCA 2 cut(s) 606, 1090
MseI TTAA 4 cut(s) 594, 642, 1104, 1122
MslI CAYNNNNRTG 2 cut(s) 633, 717
Msp20I TGGCCA 2 cut(s) 606, 1090
MspA1I CMGCKG 1 cut(s) 1223
MspI CCGG 1 cut(s) 1148
MspR9I CCNGG 7 cut(s) 91, 462, 484, 915, 1148, 1153, 1269
MvaI CCWGG 6 cut(s) 91, 462, 484, 915, 1153, 1269
MvnI CGCG 1 cut(s) 585
MwoI GCNNNNNNNGC 3 cut(s) 800, 901, 1229
NciI CCSGG 1 cut(s) 1148
NdeI CATATG 1 cut(s) 207
NlaIII CATG 8 cut(s) 23, 289, 413, 803, 841, 899, 1236, 1311
NlaIV GGNNCC 6 cut(s) 88, 267, 280, 912, 1081, 1170
NmeAIII GCCGAG 1 cut(s) 1012
NmuCI GTSAC 3 cut(s) 427, 573, 1044
NsbI TGCGCA 1 cut(s) 900
NspI RCATGY 3 cut(s) 841, 899, 1236
PaeI GCATGC 2 cut(s) 899, 1236
PagI TCATGA 1 cut(s) 285
PciI ACATGT 1 cut(s) 837
PfeI GAWTC 5 cut(s) 326, 479, 625, 882, 930
PflFI GACNNNGTC 1 cut(s) 571
PflMI CCANNNNNTGG 1 cut(s) 275
PfoI TCCNGGA 1 cut(s) 89
PkrI GCNGC 2 cut(s) 903, 1225
Ple19I CGATCG 1 cut(s) 814
PleI GAGTC 3 cut(s) 853, 997, 1190
PpsI GAGTC 3 cut(s) 853, 997, 1190
PscI ACATGT 1 cut(s) 837
PshBI ATTAAT 1 cut(s) 1104
PsiI TTATAA 1 cut(s) 174
Psp6I CCWGG 6 cut(s) 89, 460, 482, 913, 1151, 1267
PspGI CCWGG 6 cut(s) 89, 460, 482, 913, 1151, 1267
PspN4I GGNNCC 6 cut(s) 88, 267, 280, 912, 1081, 1170
PstNI CAGNNNCTG 2 cut(s) 546, 907
PsuI RGATCY 4 cut(s) 265, 1028, 1256, 1331
PsyI GACNNNGTC 1 cut(s) 571
PvuI CGATCG 1 cut(s) 814
PvuII CAGCTG 1 cut(s) 1223
RsaI GTAC 3 cut(s) 960, 1293, 1368
RsaNI GTAC 3 cut(s) 959, 1292, 1367
RseI CAYNNNNRTG 2 cut(s) 633, 717
SaqAI TTAA 4 cut(s) 594, 642, 1104, 1122
SatI GCNGC 2 cut(s) 902, 1224
SchI GAGTC 3 cut(s) 854, 998, 1190
ScrFI CCNGG 7 cut(s) 91, 462, 484, 915, 1148, 1153, 1269
SduI GDGCHC 2 cut(s) 972, 1024
SfaNI GCATC 4 cut(s) 776, 913, 973, 1346
SfcI CTRYAG 1 cut(s) 804
SmiMI CAYNNNNRTG 2 cut(s) 633, 717
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SphI GCATGC 2 cut(s) 899, 1236
Sse9I AATT 4 cut(s) 41, 220, 715, 1067
SsiI CCGC 2 cut(s) 102, 379
SspMI CTAG 1 cut(s) 941
StyD4I CCNGG 7 cut(s) 89, 460, 482, 913, 1146, 1151, 1267
TaaI ACNGT 3 cut(s) 318, 436, 1247
TaiI ACGT 2 cut(s) 447, 580
TaqI TCGA 3 cut(s) 814, 834, 877
TasI AATT 4 cut(s) 41, 220, 715, 1067
TatI WGTACW 2 cut(s) 958, 1366
TfiI GAWTC 5 cut(s) 326, 479, 625, 882, 930
Tru1I TTAA 4 cut(s) 594, 642, 1104, 1122
Tru9I TTAA 4 cut(s) 594, 642, 1104, 1122
TscAI CASTG 7 cut(s) 267, 304, 567, 626, 1194, 1206, 1252
TseFI GTSAC 3 cut(s) 427, 573, 1044
TseI GCWGC 2 cut(s) 901, 1223
Tsp45I GTSAC 3 cut(s) 427, 573, 1044
TspDTI ATGAA 7 cut(s) 54, 302, 617, 756, 788, 1148, 1296
TspGWI ACGGA 1 cut(s) 879
TspRI CASTG 7 cut(s) 267, 304, 567, 626, 1194, 1206, 1252
Tth111I GACNNNGTC 1 cut(s) 571
Van91I CCANNNNNTGG 1 cut(s) 275
VspI ATTAAT 1 cut(s) 1104
XagI CCTNNNNNAGG 1 cut(s) 418
XapI RAATTY 1 cut(s) 41
XceI RCATGY 3 cut(s) 841, 899, 1236
XcmI CCANNNNNNNNNTGG 2 cut(s) 147, 567
XmiI GTMKAC 2 cut(s) 1098, 1211
XspI CTAG 1 cut(s) 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.