Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0014497

Physical Location & Seq

Genomic Coordinates Forward (+)

3774935 .. 3775412

Gene Structure 478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1044300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGCCCTTGAGTATGGATGATGGCTGGAATCAAATCCAGTTTAATCTAGCTGATTTTACAAGGAGAGCCTATGGAACAAACTATGTGGAGACATTGCGAGTTCAGGTTCATGCAAATTGCCGCCTGAGGAGGATATATTTCTCTGACGGCTTGTACTCTGAAGAGGAACTTCCTCCTGAGTTTAAGTTGTACCTCCCAATGCAGAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF667

Protein Analysis

71

Amino Acids

8.35

Weight (kDa)

5.68

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CFA20_dom	PF05018	1 - 64	7.4e-30	CFA20 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12300
fragaria_vesca	FvH4_7g03830
malus_domestica	MD02G1276800.v1.1 MD07G1044300.v1.1
prunus_persica	Prupe.2G043300_v2.0.a1 Prupe.2G043300_v2.0.a1
pyrus_communis	pycom02g23710
rosa_chinensis	RchiOBHm_Chr1g0327201
rosa_laevigata	RLG00000030035
rosa_multiflora	Rmu_sc0000972.1_g000014
rosa_roxburghii	Rroxscaffold_4G00323070 Rroxscaffold_4G00323150
rosa_rugosa	Rorug01G0064500
rosa_samantha	Rh1AG081600 Rh1BG064800 Rh1DG086100
rosa_wichuraiana	Rw1G006440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	2 cut(s)	155, 191
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw26I	GTCTC	1 cut(s)	83
AxyI	CCTNAGG	1 cut(s)	125
BccI	CCATC	1 cut(s)	14
BceAI	ACGGC	1 cut(s)	163
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	47
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
BpuEI	CTTGAG	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	37
Bse21I	CCTNAGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	92
BseGI	GGATG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	92
BseMII	CTCAG	2 cut(s)	116, 168
BseNI	ACTGG	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	83
BspACI	CCGC	1 cut(s)	121
BspCNI	CTCAG	2 cut(s)	117, 169
BsrDI	GCAATG	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	125, 177
BstF5I	GGATG	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	83
Bsu36I	CCTNAGG	1 cut(s)	125
BtsCI	GGATG	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	154, 190
CspCI	CAANNNNNGTGG	2 cut(s)	66, 101
CviAII	CATG	2 cut(s)	110, 210
CviJI	RGCY	4 cut(s)	24, 50, 68, 150
CviKI_1	RGCY	4 cut(s)	24, 50, 68, 150
CviQI	GTAC	2 cut(s)	154, 190
DdeI	CTNAG	2 cut(s)	125, 177
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	180
Eco81I	CCTNAGG	1 cut(s)	125
FaeI	CATG	2 cut(s)	113, 213
FaiI	YATR	6 cut(s)	14, 72, 84, 111, 136, 211
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	2 cut(s)	109, 209
Fnu4HI	GCNGC	1 cut(s)	121
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	121
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	1 cut(s)	121
Hin1II	CATG	2 cut(s)	113, 213
HinfI	GANTC	1 cut(s)	28
Hpy188I	TCNGA	2 cut(s)	145, 160
Hpy188III	TCNNGA	1 cut(s)	176
HpyCH4V	TGCA	2 cut(s)	113, 202
HpyF3I	CTNAG	2 cut(s)	125, 177
Hsp92II	CATG	2 cut(s)	113, 213
LpnPI	CCDG	5 cut(s)	10, 50, 89, 137, 189
MaeI	CTAG	1 cut(s)	47
MboII	GAAGA	1 cut(s)	173
MluCI	AATT	1 cut(s)	115
MnlI	CCTC	5 cut(s)	120, 123, 157, 183, 203
MseI	TTAA	2 cut(s)	42, 183
NlaIII	CATG	2 cut(s)	113, 213
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	122
RsaI	GTAC	2 cut(s)	155, 191
RsaNI	GTAC	2 cut(s)	154, 190
SaqAI	TTAA	2 cut(s)	42, 183
SatI	GCNGC	1 cut(s)	121
SetI	ASST	3 cut(s)	52, 108, 195
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	1 cut(s)	115
SsiI	CCGC	1 cut(s)	121
SspMI	CTAG	1 cut(s)	47
TasI	AATT	1 cut(s)	115
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	2 cut(s)	42, 183
Tru9I	TTAA	2 cut(s)	42, 183
TspDTI	ATGAA	1 cut(s)	98
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.