Rh1BG064800

Protein of unknown function (DUF667)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0014497
Physical Location & Seq
Reverse (-)
9857455 .. 9858459
1005 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG064800.1

Sequence Viewer

Length: 345 bp
ATGATTGTGAAGAATCTGAAGAAATATTTCACATTTGAGATTCAAGTTCTGGATGATAAGAATGTCAGGCGACGTTTTCGAGCTTCCAATTTTCAAGCTGTCACTCGAGTGAAGCCGTATATCTGCACCATGCCACTGAGGATGGATGAGGGCTGGAATCAAATCCAGTTTAATCTGGCTGATTTTACCAGGAGAGCCTATGGAACAAACTATGTGGAGACATTGCGAGTTCAGGTTCATGCAAATTGTCGCCTGAGGAGGATATATTTCTCTGACCGCTTGTACTCTGAAGAGGAACTTCCTCCTGAATTTAAACTATACCTTCCAATGCAGCAGAGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF667

Protein Analysis

114

Amino Acids

13.94

Weight (kDa)

9.82

Isoelectric Point (pI)

45.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CFA20_dom PF05018 1 - 107 1.5e-53 CFA20 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12300
fragaria_vesca FvH4_7g03830
malus_domestica MD02G1276800.v1.1 MD07G1044300.v1.1
prunus_persica Prupe.2G043300_v2.0.a1 Prupe.2G043300_v2.0.a1
pyrus_communis pycom02g23710
rosa_chinensis RchiOBHm_Chr1g0327201
rosa_laevigata RLG00000030035
rosa_multiflora Rmu_sc0000972.1_g000014
rosa_roxburghii Rroxscaffold_4G00323070 Rroxscaffold_4G00323150
rosa_rugosa Rorug01G0064500
rosa_samantha Rh1AG081600 Rh1BG064800 Rh1DG086100
rosa_wichuraiana Rw1G006440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 277
AcsI RAATTY 1 cut(s) 308
AcuI CTGAAG 2 cut(s) 38, 309
AfaI GTAC 1 cut(s) 284
AgsI TTSAA 2 cut(s) 44, 95
AjnI CCWGG 1 cut(s) 188
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 2 cut(s) 83, 98
AluI AGCT 2 cut(s) 83, 98
Alw26I GTCTC 1 cut(s) 212
Ama87I CYCGRG 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 331
ApoI RAATTY 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 26
AvaI CYCGRG 1 cut(s) 105
AxyI CCTNAGG 1 cut(s) 254
BccI CCATC 1 cut(s) 136
BceAI ACGGC 1 cut(s) 100
BciT130I CCWGG 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 212
BisI GCNGC 1 cut(s) 332
BlsI GCNGC 1 cut(s) 333
Bme1390I CCNGG 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 166
Bse21I CCTNAGG 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 221
BseBI CCWGG 1 cut(s) 190
BseGI GGATG 3 cut(s) 58, 147, 151
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 2 cut(s) 128, 245
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 271
BsgI GTGCAG 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 105
BsmAI GTCTC 1 cut(s) 212
BsoBI CYCGRG 1 cut(s) 105
BspACI CCGC 1 cut(s) 277
BspCNI CTCAG 2 cut(s) 129, 246
BsrDI GCAATG 1 cut(s) 221
BsrI ACTGG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 137, 254
BstF5I GGATG 3 cut(s) 58, 147, 151
BstMAI GTCTC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 188
Bsu36I CCTNAGG 1 cut(s) 254
BtsCI GGATG 3 cut(s) 58, 147, 151
BtsIMutI CAGTG 1 cut(s) 134
Csp6I GTAC 1 cut(s) 283
CspCI CAANNNNNGTGG 2 cut(s) 195, 230
CviAII CATG 3 cut(s) 130, 239, 342
CviJI RGCY 6 cut(s) 83, 98, 115, 153, 179, 197
CviKI_1 RGCY 6 cut(s) 83, 98, 115, 153, 179, 197
CviQI GTAC 1 cut(s) 283
DdeI CTNAG 2 cut(s) 137, 254
DraI TTTAAA 1 cut(s) 313
Eam1104I CTCTTC 1 cut(s) 285
EarI CTCTTC 1 cut(s) 285
Eco57I CTGAAG 2 cut(s) 38, 309
Eco81I CCTNAGG 1 cut(s) 254
Eco88I CYCGRG 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 188
FaeI CATG 3 cut(s) 133, 242, 345
FaiI YATR 8 cut(s) 120, 131, 201, 213, 240, 265, 319, 343
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FatI CATG 3 cut(s) 129, 238, 341
Fnu4HI GCNGC 1 cut(s) 332
FokI GGATG 3 cut(s) 65, 154, 158
Fsp4HI GCNGC 1 cut(s) 332
GluI GCNGC 1 cut(s) 332
Hin1II CATG 3 cut(s) 133, 242, 345
HinfI GANTC 3 cut(s) 13, 40, 157
Hpy188I TCNGA 3 cut(s) 18, 274, 289
Hpy188III TCNNGA 2 cut(s) 50, 305
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 1 cut(s) 332
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 3 cut(s) 126, 242, 331
HpyF3I CTNAG 2 cut(s) 137, 254
HpySE526I ACGT 1 cut(s) 73
Hsp92II CATG 3 cut(s) 133, 242, 345
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 1 cut(s) 100
MboII GAAGA 3 cut(s) 22, 31, 302
MluCI AATT 3 cut(s) 88, 244, 308
MnlI CCTC 7 cut(s) 132, 142, 249, 252, 286, 312, 330
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 2 cut(s) 171, 312
MslI CAYNNNNRTG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 190
MvaI CCWGG 1 cut(s) 190
NlaIII CATG 3 cut(s) 133, 242, 345
NmuCI GTSAC 1 cut(s) 100
OliI CACNNNNGTG 1 cut(s) 107
PaeR7I CTCGAG 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 26
PfeI GAWTC 3 cut(s) 13, 40, 157
PkrI GCNGC 1 cut(s) 333
Psp6I CCWGG 1 cut(s) 188
PspGI CCWGG 1 cut(s) 188
PspXI VCTCGAGB 1 cut(s) 105
RsaI GTAC 1 cut(s) 284
RsaNI GTAC 1 cut(s) 283
RseI CAYNNNNRTG 1 cut(s) 107
SaqAI TTAA 2 cut(s) 171, 312
SatI GCNGC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 190
SetI ASST 5 cut(s) 76, 85, 100, 237, 324
Sfr274I CTCGAG 1 cut(s) 105
SlaI CTCGAG 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 105
SmoI CTYRAG 1 cut(s) 105
Sse9I AATT 3 cut(s) 88, 244, 308
SsiI CCGC 1 cut(s) 277
SspI AATATT 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 188
TaiI ACGT 1 cut(s) 76
TaqI TCGA 2 cut(s) 79, 106
TasI AATT 3 cut(s) 88, 244, 308
TatI WGTACW 1 cut(s) 282
TfiI GAWTC 3 cut(s) 13, 40, 157
Tru1I TTAA 2 cut(s) 171, 312
Tru9I TTAA 2 cut(s) 171, 312
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 1 cut(s) 331
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 227
TspRI CASTG 1 cut(s) 141
XapI RAATTY 1 cut(s) 308
XhoI CTCGAG 1 cut(s) 105
XmnI GAANNNNTTC 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.