Rh1DG086100

Protein of unknown function (DUF667)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0014497
Physical Location & Seq
Reverse (-)
16007353 .. 16013687
6335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG086100.1

Sequence Viewer

Length: 642 bp
ATGAATCCACTGATTTCTGCCACTTCCGTTATTGTTATTGGATTGGCAGTCGAGTTTGCTTCTATTGGACTTGGGGTTGTTCAAGGTACTGCTACAGGACAGGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAAGGAAAAATACGGGTTGTCAATGGCCATATAAAGAGACCACAGGATGAAGACATACAATCCAATGTCCTTGAAATTGTTGGATCGAATATCCAGTCCACATACATTACTTGCCCTGCAGATCCATCAGCAACACTGAGTATAAAACTGCCGTTCCTTGTTATGATTGTGAAGAATCTGAAGAAATATTTCACATTTGAGATTCAAGTTCTGGATGATAAGAATGTCAGGCGACGTTTTCGAGCTTCCAATTTTCAAGCTGTCACTCGAGTGAAGCCGTATATCTGCACCATGCCACTGAGGATGGATGAGGGCTGGAATCAAATCCAGTTTAATCTGGCTGATTTTACCAGGAGAGCCTATGGAACAAACTATGTGGAGACGTTGCGAGTTCAGGTTCATGCAAATTGTCGCCTGAGGAGGATATATTTCTCTGATCGCTTGTACTCTGAAGAGGAACTTCCTCCTGAATTTAAACTATACCTTCCAATGCAGCAGAGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF667

Protein Analysis

213

Amino Acids

24.24

Weight (kDa)

9.17

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CFA20_dom PF05018 41 - 206 7e-78 CFA20 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12300
fragaria_vesca FvH4_7g03830
malus_domestica MD02G1276800.v1.1 MD07G1044300.v1.1
prunus_persica Prupe.2G043300_v2.0.a1 Prupe.2G043300_v2.0.a1
pyrus_communis pycom02g23710
rosa_chinensis RchiOBHm_Chr1g0327201
rosa_laevigata RLG00000030035
rosa_multiflora Rmu_sc0000972.1_g000014
rosa_roxburghii Rroxscaffold_4G00323070 Rroxscaffold_4G00323150
rosa_rugosa Rorug01G0064500
rosa_samantha Rh1AG081600 Rh1BG064800 Rh1DG086100
rosa_wichuraiana Rw1G006440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 119
AciI CCGC 1 cut(s) 134
AclWI GGATC 3 cut(s) 122, 226, 251
AcoI YGGCCR 1 cut(s) 160
AcsI RAATTY 1 cut(s) 605
AcuI CTGAAG 2 cut(s) 335, 606
AfaI GTAC 2 cut(s) 88, 581
AgsI TTSAA 4 cut(s) 83, 209, 341, 392
AjnI CCWGG 1 cut(s) 485
AleI CACNNNNGTG 1 cut(s) 404
AluBI AGCT 2 cut(s) 380, 395
AluI AGCT 2 cut(s) 380, 395
Alw26I GTCTC 3 cut(s) 115, 166, 509
AlwI GGATC 3 cut(s) 122, 226, 251
Ama87I CYCGRG 2 cut(s) 128, 402
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 628
ApoI RAATTY 1 cut(s) 605
ArsI GACNNNNNNTTYG 2 cut(s) 215, 247
Asp700I GAANNNNTTC 1 cut(s) 323
AvaI CYCGRG 2 cut(s) 128, 402
AxyI CCTNAGG 1 cut(s) 551
BalI TGGCCA 1 cut(s) 162
BarI GAAGNNNNNNTAC 2 cut(s) 129, 161
BbsI GAAGAC 1 cut(s) 192
BccI CCATC 2 cut(s) 268, 433
BceAI ACGGC 2 cut(s) 271, 397
BciT130I CCWGG 1 cut(s) 487
BcoDI GTCTC 3 cut(s) 115, 166, 509
BfmI CTRYAG 3 cut(s) 93, 105, 252
BisI GCNGC 1 cut(s) 629
BlsI GCNGC 1 cut(s) 630
Bme1390I CCNGG 1 cut(s) 487
BmeT110I CYCGRG 2 cut(s) 128, 402
BmrFI CCNGG 1 cut(s) 487
BpiI GAAGAC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 129
Bse1I ACTGG 2 cut(s) 229, 463
Bse21I CCTNAGG 1 cut(s) 551
BseBI CCWGG 1 cut(s) 487
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 4 cut(s) 187, 355, 444, 448
BseMII CTCAG 3 cut(s) 263, 425, 542
BseNI ACTGG 2 cut(s) 229, 463
BseRI GAGGAG 1 cut(s) 568
BsgI GTGCAG 1 cut(s) 406
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 1 cut(s) 162
BsiHKCI CYCGRG 2 cut(s) 128, 402
BsmAI GTCTC 3 cut(s) 115, 166, 509
BsmBI CGTCTC 1 cut(s) 509
BsnI GGCC 1 cut(s) 162
Bso31I GGTCTC 1 cut(s) 166
BsoBI CYCGRG 2 cut(s) 128, 402
Bsp143I GATC 4 cut(s) 114, 218, 256, 571
Bsp68I TCGCGA 1 cut(s) 119
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 3 cut(s) 264, 426, 543
BspFNI CGCG 1 cut(s) 119
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 3 cut(s) 122, 226, 251
BspTNI GGTCTC 1 cut(s) 166
BsrI ACTGG 2 cut(s) 229, 463
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 4 cut(s) 114, 218, 256, 571
Bst2UI CCWGG 1 cut(s) 487
Bst6I CTCTTC 1 cut(s) 582
BstDEI CTNAG 3 cut(s) 272, 434, 551
BstF5I GGATG 4 cut(s) 187, 355, 444, 448
BstFNI CGCG 1 cut(s) 119
BstKTI GATC 4 cut(s) 117, 221, 259, 574
BstMAI GTCTC 3 cut(s) 115, 166, 509
BstMBI GATC 4 cut(s) 114, 218, 256, 571
BstNI CCWGG 1 cut(s) 487
BstSCI CCNGG 1 cut(s) 485
BstSFI CTRYAG 3 cut(s) 93, 105, 252
BstUI CGCG 1 cut(s) 119
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
Bsu36I CCTNAGG 1 cut(s) 551
BsuRI GGCC 1 cut(s) 162
BtsCI GGATG 4 cut(s) 187, 355, 444, 448
BtsIMutI CAGTG 3 cut(s) 8, 269, 431
BtuMI TCGCGA 1 cut(s) 119
Csp6I GTAC 2 cut(s) 87, 580
CspCI CAANNNNNGTGG 2 cut(s) 492, 527
CviAII CATG 3 cut(s) 427, 536, 639
CviJI RGCY 8 cut(s) 104, 162, 380, 395, 412, 450, 476, 494
CviKI_1 RGCY 8 cut(s) 104, 162, 380, 395, 412, 450, 476, 494
CviQI GTAC 2 cut(s) 87, 580
DdeI CTNAG 3 cut(s) 272, 434, 551
DpnI GATC 4 cut(s) 116, 220, 258, 573
DpnII GATC 4 cut(s) 114, 218, 256, 571
DraI TTTAAA 1 cut(s) 610
EaeI YGGCCR 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 582
EarI CTCTTC 1 cut(s) 582
EciI GGCGGA 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 166
Eco57I CTGAAG 2 cut(s) 335, 606
Eco81I CCTNAGG 1 cut(s) 551
Eco88I CYCGRG 2 cut(s) 128, 402
EcoRII CCWGG 1 cut(s) 485
Esp3I CGTCTC 1 cut(s) 509
FaeI CATG 3 cut(s) 430, 539, 642
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FatI CATG 3 cut(s) 426, 535, 638
Fnu4HI GCNGC 1 cut(s) 629
FokI GGATG 4 cut(s) 194, 362, 451, 455
Fsp4HI GCNGC 1 cut(s) 629
GluI GCNGC 1 cut(s) 629
HaeIII GGCC 1 cut(s) 162
Hin1II CATG 3 cut(s) 430, 539, 642
HinfI GANTC 4 cut(s) 4, 310, 337, 454
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 3 cut(s) 315, 571, 586
Hpy188III TCNNGA 3 cut(s) 118, 347, 602
Hpy8I GTNNAC 1 cut(s) 234
Hpy99I CGWCG 1 cut(s) 372
HpyAV CCTTC 3 cut(s) 104, 131, 629
HpyCH4IV ACGT 2 cut(s) 370, 518
HpyCH4V TGCA 4 cut(s) 254, 423, 539, 628
HpyF3I CTNAG 3 cut(s) 272, 434, 551
HpySE526I ACGT 2 cut(s) 370, 518
Hsp92II CATG 3 cut(s) 430, 539, 642
Kzo9I GATC 4 cut(s) 114, 218, 256, 571
MaeII ACGT 2 cut(s) 370, 518
MaeIII GTNAC 1 cut(s) 397
MalI GATC 4 cut(s) 116, 220, 258, 573
MboI GATC 4 cut(s) 114, 218, 256, 571
MboII GAAGA 4 cut(s) 197, 319, 328, 599
MflI RGATCY 1 cut(s) 256
MlsI TGGCCA 1 cut(s) 162
MluCI AATT 4 cut(s) 210, 385, 541, 605
MluNI TGGCCA 1 cut(s) 162
MmeI TCCRAC 1 cut(s) 196
MnlI CCTC 8 cut(s) 124, 429, 439, 546, 549, 583, 609, 627
Mox20I TGGCCA 1 cut(s) 162
MroXI GAANNNNTTC 1 cut(s) 323
MscI TGGCCA 1 cut(s) 162
MseI TTAA 2 cut(s) 468, 609
MslI CAYNNNNRTG 1 cut(s) 404
Msp20I TGGCCA 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 487
MvaI CCWGG 1 cut(s) 487
MvnI CGCG 1 cut(s) 119
NdeII GATC 4 cut(s) 114, 218, 256, 571
NlaIII CATG 3 cut(s) 430, 539, 642
NmuCI GTSAC 1 cut(s) 397
NruI TCGCGA 1 cut(s) 119
OliI CACNNNNGTG 1 cut(s) 404
PaeR7I CTCGAG 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 4 cut(s) 4, 310, 337, 454
PkrI GCNGC 1 cut(s) 630
Psp6I CCWGG 1 cut(s) 485
PspGI CCWGG 1 cut(s) 485
PspXI VCTCGAGB 1 cut(s) 402
PstI CTGCAG 1 cut(s) 256
PsuI RGATCY 1 cut(s) 256
RruI TCGCGA 1 cut(s) 119
RsaI GTAC 2 cut(s) 88, 581
RsaNI GTAC 2 cut(s) 87, 580
RseI CAYNNNNRTG 1 cut(s) 404
SaqAI TTAA 2 cut(s) 468, 609
SatI GCNGC 1 cut(s) 629
Sau3AI GATC 4 cut(s) 114, 218, 256, 571
ScrFI CCNGG 1 cut(s) 487
SetI ASST 7 cut(s) 88, 373, 382, 397, 521, 534, 621
SfcI CTRYAG 3 cut(s) 93, 105, 252
Sfr274I CTCGAG 1 cut(s) 402
SlaI CTCGAG 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 404
SmlI CTYRAG 1 cut(s) 402
SmoI CTYRAG 1 cut(s) 402
Sse9I AATT 4 cut(s) 210, 385, 541, 605
SsiI CCGC 1 cut(s) 134
SspI AATATT 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 485
TaiI ACGT 2 cut(s) 373, 521
TaqI TCGA 4 cut(s) 51, 221, 376, 403
TasI AATT 4 cut(s) 210, 385, 541, 605
TatI WGTACW 1 cut(s) 579
TfiI GAWTC 4 cut(s) 4, 310, 337, 454
Tru1I TTAA 2 cut(s) 468, 609
Tru9I TTAA 2 cut(s) 468, 609
TscAI CASTG 3 cut(s) 15, 276, 438
TseFI GTSAC 1 cut(s) 397
TseI GCWGC 1 cut(s) 628
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 3 cut(s) 17, 198, 524
TspGWI ACGGA 1 cut(s) 16
TspRI CASTG 3 cut(s) 15, 276, 438
XapI RAATTY 1 cut(s) 605
XhoI CTCGAG 1 cut(s) 402
XmnI GAANNNNTTC 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.