Rorug01G0064500

Protein of unknown function (DUF667)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
10490474 .. 10491538
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0064500.1

Sequence Viewer

Length: 324 bp
ATGCAGAATCTGAAATTGCTCCATTGTGCGGAGAAATTAGGAGTCATTGTGTCTCCACCGCCGAGCCTTGTTGCCAATCTTTCAGAAAGGTTACAGAGAAAGATTAACGATAGTTTTTTAGAGGGTGAGGCTTTGATCATTTCTCTTGGTTGTTTGGCTTTGTATGGCTTGTTTCTGGGAAGTAGTGGTGCAAGGCTTTCGCTATGGTGGAAGAAGGAAAACAAGGCAGAGTGGGAAGCTTCCTGTGTGATGTGTATTGCTGAAATTGAAGGAAGAAAATGTGGCATCTTGTGTAGATTTCTAGCGCTGGAACTCGGCCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

107

Amino Acids

11.83

Weight (kDa)

8.26

Isoelectric Point (pI)

34.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014497)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 29, 59, 319
AcoI YGGCCR 1 cut(s) 316
AfeI AGCGCT 1 cut(s) 306
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 1 cut(s) 269
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
Alw26I GTCTC 1 cut(s) 57
AlwNI CAGNNNCTG 1 cut(s) 10
Aor51HI AGCGCT 1 cut(s) 306
AoxI GGCC 1 cut(s) 316
AspLEI GCGC 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 137
BcgI CGANNNNNNTGC 2 cut(s) 180, 214
BclI TGATCA 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 57
BfaI CTAG 1 cut(s) 302
BfoI RGCGCY 1 cut(s) 308
BisI GCNGC 1 cut(s) 319
BlsI GCNGC 1 cut(s) 320
BmsI GCATC 1 cut(s) 294
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 28
BseX3I CGGCCG 1 cut(s) 316
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 1 cut(s) 318
BsiEI CGRYCG 1 cut(s) 319
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 57
BsnI GGCC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 135
BspACI CCGC 3 cut(s) 29, 59, 319
BspANI GGCC 1 cut(s) 318
BssMI GATC 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 1 cut(s) 307
BstKTI GATC 1 cut(s) 138
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 1 cut(s) 135
BstMCI CGRYCG 1 cut(s) 319
BstZI CGGCCG 1 cut(s) 316
BsuRI GGCC 1 cut(s) 318
CaiI CAGNNNCTG 1 cut(s) 10
CfoI GCGC 1 cut(s) 307
CviJI RGCY 7 cut(s) 66, 131, 158, 168, 196, 239, 318
CviKI_1 RGCY 7 cut(s) 66, 131, 158, 168, 196, 239, 318
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
EaeI YGGCCR 1 cut(s) 316
EagI CGGCCG 1 cut(s) 316
EclXI CGGCCG 1 cut(s) 316
Eco47III AGCGCT 1 cut(s) 306
Eco52I CGGCCG 1 cut(s) 316
FaiI YATR 2 cut(s) 165, 205
FbaI TGATCA 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 319
Fsp4HI GCNGC 1 cut(s) 319
FspBI CTAG 1 cut(s) 302
GlaI GCGC 1 cut(s) 306
GluI GCNGC 1 cut(s) 319
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 1 cut(s) 318
HhaI GCGC 1 cut(s) 307
Hin6I GCGC 1 cut(s) 305
HinP1I GCGC 1 cut(s) 305
HindIII AAGCTT 1 cut(s) 237
HinfI GANTC 2 cut(s) 7, 42
HphI GGTGA 1 cut(s) 137
Hpy188I TCNGA 2 cut(s) 12, 85
HpyAV CCTTC 2 cut(s) 208, 263
HpyCH4V TGCA 2 cut(s) 4, 191
HspAI GCGC 1 cut(s) 305
Ksp22I TGATCA 1 cut(s) 135
Kzo9I GATC 1 cut(s) 135
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 3 cut(s) 161, 256, 293
LweI GCATC 1 cut(s) 294
MaeI CTAG 1 cut(s) 302
MaeIII GTNAC 1 cut(s) 90
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 2 cut(s) 223, 285
MluCI AATT 3 cut(s) 14, 35, 264
MlyI GAGTC 1 cut(s) 51
MnlI CCTC 2 cut(s) 115, 121
MseI TTAA 1 cut(s) 105
NdeII GATC 1 cut(s) 135
NmeAIII GCCGAG 2 cut(s) 87, 294
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 320
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PstNI CAGNNNCTG 1 cut(s) 10
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 1 cut(s) 319
Sau3AI GATC 1 cut(s) 135
SchI GAGTC 1 cut(s) 51
SetI ASST 2 cut(s) 92, 241
SfaNI GCATC 1 cut(s) 294
Sse9I AATT 3 cut(s) 14, 35, 264
SsiI CCGC 3 cut(s) 29, 59, 319
SspMI CTAG 1 cut(s) 302
TasI AATT 3 cut(s) 14, 35, 264
TauI GCSGC 1 cut(s) 321
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
XspI CTAG 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.