Rh1AG081600

Protein of unknown function (DUF667)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0014497
Physical Location & Seq
Reverse (-)
14022022 .. 14044576
22555 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG081600.1

Sequence Viewer

Length: 504 bp
ATGCAACATCTCATTGTCAATGGCCATATAAAGAGACCACAGGATGAAGACATACAATCCAATGTCCTTGAAATTGTTGGATCGAATATCCAGTCCACATACATTACTTGCCCTGCAGATCCATCAGCAACACTGAGTATAAAACTGCCGTTCCTTGTTATGATTGTCAAGAATCTGAAGAAATATTTCACATTTGAGATTCAAGTTCTGGATGATAAGAATGTCAGGCGACGTTTTCGAGCTTCCAATTTTCAAGCTGTCACTCGAGTGAAGCCGTATATCTGCACCATGCCACTGAGGATGGATGAGGGCTGGAATCAAATCCAGTTTAATCTGGCTGATTTTACCAGGAGAGCCTATGGAACAAACTATGTGGAGACATTGCGAGTTCAGGTTCATGCAAATTGTCGCCTGAGGAGGATATATTTCTCTGACCGCTTGTACTCTGAAGAGGAACTTCCTCCGGAATTTAAACTATACCTTCCAATGCAGCAGAGGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF667

Protein Analysis

167

Amino Acids

19.76

Weight (kDa)

9.35

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CFA20_dom PF05018 5 - 160 2.1e-77 CFA20 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12300
fragaria_vesca FvH4_7g03830
malus_domestica MD02G1276800.v1.1 MD07G1044300.v1.1
prunus_persica Prupe.2G043300_v2.0.a1 Prupe.2G043300_v2.0.a1
pyrus_communis pycom02g23710
rosa_chinensis RchiOBHm_Chr1g0327201
rosa_laevigata RLG00000030035
rosa_multiflora Rmu_sc0000972.1_g000014
rosa_roxburghii Rroxscaffold_4G00323070 Rroxscaffold_4G00323150
rosa_rugosa Rorug01G0064500
rosa_samantha Rh1AG081600 Rh1BG064800 Rh1DG086100
rosa_wichuraiana Rw1G006440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 463
AciI CCGC 1 cut(s) 436
AclWI GGATC 2 cut(s) 88, 113
AcoI YGGCCR 1 cut(s) 22
AcsI RAATTY 1 cut(s) 467
AcuI CTGAAG 2 cut(s) 197, 468
AfaI GTAC 1 cut(s) 443
AgsI TTSAA 3 cut(s) 71, 203, 254
AjnI CCWGG 1 cut(s) 347
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 2 cut(s) 242, 257
AluI AGCT 2 cut(s) 242, 257
Alw26I GTCTC 2 cut(s) 28, 371
AlwI GGATC 2 cut(s) 88, 113
Ama87I CYCGRG 1 cut(s) 264
Aor13HI TCCGGA 1 cut(s) 463
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 490
ApoI RAATTY 1 cut(s) 467
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
Asp700I GAANNNNTTC 1 cut(s) 185
AvaI CYCGRG 1 cut(s) 264
AxyI CCTNAGG 1 cut(s) 413
BalI TGGCCA 1 cut(s) 24
BbsI GAAGAC 1 cut(s) 54
BccI CCATC 2 cut(s) 130, 295
BceAI ACGGC 2 cut(s) 133, 259
BciT130I CCWGG 1 cut(s) 349
BcoDI GTCTC 2 cut(s) 28, 371
BfmI CTRYAG 1 cut(s) 114
BisI GCNGC 1 cut(s) 491
BlsI GCNGC 1 cut(s) 492
Bme1390I CCNGG 1 cut(s) 349
BmeT110I CYCGRG 1 cut(s) 264
BmrFI CCNGG 1 cut(s) 349
BpiI GAAGAC 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 28
BsaWI WCCGGW 1 cut(s) 463
Bse1I ACTGG 2 cut(s) 91, 325
Bse21I CCTNAGG 1 cut(s) 413
Bse3DI GCAATG 1 cut(s) 380
BseAI TCCGGA 1 cut(s) 463
BseBI CCWGG 1 cut(s) 349
BseGI GGATG 4 cut(s) 49, 217, 306, 310
BseMI GCAATG 1 cut(s) 380
BseMII CTCAG 3 cut(s) 125, 287, 404
BseNI ACTGG 2 cut(s) 91, 325
BseRI GAGGAG 1 cut(s) 430
BsgI GTGCAG 1 cut(s) 268
BshFI GGCC 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 264
BsiSI CCGG 1 cut(s) 464
BsmAI GTCTC 2 cut(s) 28, 371
BsnI GGCC 1 cut(s) 24
Bso31I GGTCTC 1 cut(s) 28
BsoBI CYCGRG 1 cut(s) 264
Bsp13I TCCGGA 1 cut(s) 463
Bsp143I GATC 2 cut(s) 80, 118
BspACI CCGC 1 cut(s) 436
BspANI GGCC 1 cut(s) 24
BspCNI CTCAG 3 cut(s) 126, 288, 405
BspEI TCCGGA 1 cut(s) 463
BspMAI CTGCAG 1 cut(s) 118
BspPI GGATC 2 cut(s) 88, 113
BspTNI GGTCTC 1 cut(s) 28
BsrDI GCAATG 1 cut(s) 380
BsrI ACTGG 2 cut(s) 91, 325
BssMI GATC 2 cut(s) 80, 118
Bst2UI CCWGG 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 444
BstDEI CTNAG 3 cut(s) 134, 296, 413
BstF5I GGATG 4 cut(s) 49, 217, 306, 310
BstKTI GATC 2 cut(s) 83, 121
BstMAI GTCTC 2 cut(s) 28, 371
BstMBI GATC 2 cut(s) 80, 118
BstNI CCWGG 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 347
BstSFI CTRYAG 1 cut(s) 114
BstV2I GAAGAC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
Bsu36I CCTNAGG 1 cut(s) 413
BsuRI GGCC 1 cut(s) 24
BtsCI GGATG 4 cut(s) 49, 217, 306, 310
BtsIMutI CAGTG 2 cut(s) 131, 293
Csp6I GTAC 1 cut(s) 442
CspCI CAANNNNNGTGG 2 cut(s) 354, 389
CviAII CATG 3 cut(s) 289, 398, 501
CviJI RGCY 7 cut(s) 24, 242, 257, 274, 312, 338, 356
CviKI_1 RGCY 7 cut(s) 24, 242, 257, 274, 312, 338, 356
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 3 cut(s) 134, 296, 413
DpnI GATC 2 cut(s) 82, 120
DpnII GATC 2 cut(s) 80, 118
DraI TTTAAA 1 cut(s) 472
EaeI YGGCCR 1 cut(s) 22
Eam1104I CTCTTC 1 cut(s) 444
EarI CTCTTC 1 cut(s) 444
Eco31I GGTCTC 1 cut(s) 28
Eco57I CTGAAG 2 cut(s) 197, 468
Eco81I CCTNAGG 1 cut(s) 413
Eco88I CYCGRG 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 347
FaeI CATG 3 cut(s) 292, 401, 504
FalI AAGNNNNNCTT 2 cut(s) 441, 473
FatI CATG 3 cut(s) 288, 397, 500
Fnu4HI GCNGC 1 cut(s) 491
FokI GGATG 4 cut(s) 56, 224, 313, 317
Fsp4HI GCNGC 1 cut(s) 491
GluI GCNGC 1 cut(s) 491
HaeIII GGCC 1 cut(s) 24
HapII CCGG 1 cut(s) 464
Hin1II CATG 3 cut(s) 292, 401, 504
HinfI GANTC 3 cut(s) 172, 199, 316
HpaII CCGG 1 cut(s) 464
Hpy166II GTNNAC 1 cut(s) 96
Hpy188I TCNGA 3 cut(s) 177, 433, 448
Hpy188III TCNNGA 3 cut(s) 169, 209, 464
Hpy8I GTNNAC 1 cut(s) 96
Hpy99I CGWCG 1 cut(s) 234
HpyAV CCTTC 1 cut(s) 491
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 5 cut(s) 4, 116, 285, 401, 490
HpyF3I CTNAG 3 cut(s) 134, 296, 413
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 3 cut(s) 292, 401, 504
Kpn2I TCCGGA 1 cut(s) 463
Kzo9I GATC 2 cut(s) 80, 118
MaeII ACGT 1 cut(s) 232
MaeIII GTNAC 1 cut(s) 259
MalI GATC 2 cut(s) 82, 120
MboI GATC 2 cut(s) 80, 118
MboII GAAGA 3 cut(s) 59, 190, 461
MflI RGATCY 1 cut(s) 118
MlsI TGGCCA 1 cut(s) 24
MluCI AATT 4 cut(s) 72, 247, 403, 467
MluNI TGGCCA 1 cut(s) 24
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 7 cut(s) 291, 301, 408, 411, 445, 471, 489
Mox20I TGGCCA 1 cut(s) 24
MroI TCCGGA 1 cut(s) 463
MroXI GAANNNNTTC 1 cut(s) 185
MscI TGGCCA 1 cut(s) 24
MseI TTAA 2 cut(s) 330, 471
MslI CAYNNNNRTG 1 cut(s) 266
Msp20I TGGCCA 1 cut(s) 24
MspI CCGG 1 cut(s) 464
MspR9I CCNGG 1 cut(s) 349
MvaI CCWGG 1 cut(s) 349
NdeII GATC 2 cut(s) 80, 118
NlaIII CATG 3 cut(s) 292, 401, 504
NmuCI GTSAC 1 cut(s) 259
OliI CACNNNNGTG 1 cut(s) 266
PaeR7I CTCGAG 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 185
PfeI GAWTC 3 cut(s) 172, 199, 316
PkrI GCNGC 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 347
PspGI CCWGG 1 cut(s) 347
PspXI VCTCGAGB 1 cut(s) 264
PstI CTGCAG 1 cut(s) 118
PsuI RGATCY 1 cut(s) 118
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 2 cut(s) 330, 471
SatI GCNGC 1 cut(s) 491
Sau3AI GATC 2 cut(s) 80, 118
ScrFI CCNGG 1 cut(s) 349
SetI ASST 5 cut(s) 235, 244, 259, 396, 483
SfcI CTRYAG 1 cut(s) 114
Sfr274I CTCGAG 1 cut(s) 264
SlaI CTCGAG 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
Sse9I AATT 4 cut(s) 72, 247, 403, 467
SsiI CCGC 1 cut(s) 436
SspI AATATT 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 347
TaiI ACGT 1 cut(s) 235
TaqI TCGA 3 cut(s) 83, 238, 265
TasI AATT 4 cut(s) 72, 247, 403, 467
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 3 cut(s) 172, 199, 316
Tru1I TTAA 2 cut(s) 330, 471
Tru9I TTAA 2 cut(s) 330, 471
TscAI CASTG 2 cut(s) 138, 300
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 1 cut(s) 490
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 2 cut(s) 60, 386
TspRI CASTG 2 cut(s) 138, 300
XapI RAATTY 1 cut(s) 467
XhoI CTCGAG 1 cut(s) 264
XmnI GAANNNNTTC 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.