MD07G1049900.v1.1

Protein ENHANCED DISEASE RESISTANCE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0001313
Physical Location & Seq
Reverse (-)
4273777 .. 4274097
321 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1049900.v1.1.491

Sequence Viewer

Length: 321 bp
ATGGACGGATGGCCGTTTAATAAGGTAGGGAGTGAGCGGCACAGCTCCAGCTCCAGAAGTGGAGTTGGAGGAGGAGGGATGTTTGAGTATTTTGGGTGGGTGTATCATCTGAGTACGAATAAGATAGGGCATGAATATTGTCACCTCCAGTTTCTTTTTCTCCGGGGAAAGTACGTCGAGATGTATAAGCGGGATCCCCATGAGAACCCCGGCATTAGACCCGTTCGGAGGGTTGCTGTTGGGCCTACTCCGATGGTGGAGGAGCTGGGGCGTCGAAAGGTTAATCATGGGGGGGTAAGGGTGGGGATATCTATGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336 START

Protein Analysis

107

Amino Acids

12.05

Weight (kDa)

9.84

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 37
AciI CCGC 2 cut(s) 37, 190
AclWI GGATC 2 cut(s) 188, 201
AcoI YGGCCR 1 cut(s) 11
AcyI GRCGYC 1 cut(s) 271
AfaI GTAC 2 cut(s) 115, 173
AfiI CCNNNNNNNGG 1 cut(s) 228
AluBI AGCT 3 cut(s) 45, 51, 265
AluI AGCT 3 cut(s) 45, 51, 265
AlwI GGATC 2 cut(s) 188, 201
AoxI GGCC 2 cut(s) 11, 242
AspS9I GGNCC 1 cut(s) 242
AsuC2I CCSGG 2 cut(s) 164, 210
AsuHPI GGTGA 1 cut(s) 134
BamHI GGATCC 1 cut(s) 193
BccI CCATC 2 cut(s) 3, 247
BcnI CCSGG 2 cut(s) 164, 210
BisI GCNGC 1 cut(s) 38
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 2 cut(s) 164, 210
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 2 cut(s) 164, 210
BpmI CTGGAG 3 cut(s) 31, 37, 131
BpuMI CCSGG 2 cut(s) 164, 210
BsaHI GRCGYC 1 cut(s) 271
BsaJI CCNNGG 2 cut(s) 163, 208
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 148
BseDI CCNNGG 2 cut(s) 163, 208
BseGI GGATG 2 cut(s) 14, 84
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 3 cut(s) 84, 87, 275
BseYI CCCAGC 1 cut(s) 265
BshFI GGCC 2 cut(s) 13, 244
BsiSI CCGG 2 cut(s) 163, 210
BslI CCNNNNNNNGG 1 cut(s) 228
BsnI GGCC 2 cut(s) 13, 244
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 2 cut(s) 37, 190
BspANI GGCC 2 cut(s) 13, 244
BspCNI CTCAG 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 2 cut(s) 188, 201
BsrBI CCGCTC 1 cut(s) 37
BsrI ACTGG 1 cut(s) 148
BssECI CCNNGG 2 cut(s) 163, 208
BssMI GATC 1 cut(s) 193
BssNI GRCGYC 1 cut(s) 271
BstACI GRCGYC 1 cut(s) 271
BstDEI CTNAG 1 cut(s) 110
BstF5I GGATG 2 cut(s) 14, 84
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstSCI CCNGG 2 cut(s) 162, 208
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 2 cut(s) 13, 244
BtsCI GGATG 2 cut(s) 14, 84
Cfr13I GGNCC 1 cut(s) 242
CseI GACGC 1 cut(s) 260
Csp6I GTAC 2 cut(s) 114, 172
CviAII CATG 3 cut(s) 131, 200, 287
CviJI RGCY 5 cut(s) 13, 45, 51, 244, 265
CviKI_1 RGCY 5 cut(s) 13, 45, 51, 244, 265
CviQI GTAC 2 cut(s) 114, 172
DdeI CTNAG 1 cut(s) 110
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 11
Eco32I GATATC 1 cut(s) 309
EcoRV GATATC 1 cut(s) 309
FaeI CATG 3 cut(s) 134, 203, 290
FaiI YATR 5 cut(s) 132, 186, 201, 288, 314
FatI CATG 3 cut(s) 130, 199, 286
FauI CCCGC 1 cut(s) 183
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 2 cut(s) 21, 91
Fsp4HI GCNGC 1 cut(s) 38
GluI GCNGC 1 cut(s) 38
GsaI CCCAGC 1 cut(s) 269
GsuI CTGGAG 3 cut(s) 31, 37, 131
HaeIII GGCC 2 cut(s) 13, 244
HapII CCGG 2 cut(s) 163, 210
HgaI GACGC 1 cut(s) 260
Hin1I GRCGYC 1 cut(s) 271
Hin1II CATG 3 cut(s) 134, 203, 290
HpaII CCGG 2 cut(s) 163, 210
HphI GGTGA 1 cut(s) 134
Hpy188I TCNGA 3 cut(s) 111, 228, 252
Hpy188III TCNNGA 2 cut(s) 54, 178
Hpy99I CGWCG 2 cut(s) 179, 276
HpyCH4IV ACGT 1 cut(s) 174
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 1 cut(s) 271
Hsp92II CATG 3 cut(s) 134, 203, 290
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 3 cut(s) 50, 56, 262
LpnPI CCDG 6 cut(s) 61, 67, 161, 176, 223, 251
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 140
MalI GATC 1 cut(s) 195
MbiI CCGCTC 1 cut(s) 37
MboI GATC 1 cut(s) 193
MflI RGATCY 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 46
MnlI CCTC 6 cut(s) 62, 65, 68, 155, 222, 253
MseI TTAA 2 cut(s) 18, 282
MspI CCGG 2 cut(s) 163, 210
MspR9I CCNGG 2 cut(s) 164, 210
NciI CCSGG 2 cut(s) 164, 210
NdeII GATC 1 cut(s) 193
NlaIII CATG 3 cut(s) 134, 203, 290
NlaIV GGNNCC 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 140
PkrI GCNGC 1 cut(s) 39
PspFI CCCAGC 1 cut(s) 265
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 1 cut(s) 242
PsuI RGATCY 1 cut(s) 193
RsaI GTAC 2 cut(s) 115, 173
RsaNI GTAC 2 cut(s) 114, 172
SaqAI TTAA 2 cut(s) 18, 282
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 242
ScrFI CCNGG 2 cut(s) 164, 210
SetI ASST 7 cut(s) 27, 47, 53, 147, 177, 267, 282
SsiI CCGC 2 cut(s) 37, 190
SspI AATATT 1 cut(s) 137
StyD4I CCNGG 2 cut(s) 162, 208
TaiI ACGT 1 cut(s) 177
TaqI TCGA 2 cut(s) 177, 274
TauI GCSGC 1 cut(s) 40
Tru1I TTAA 2 cut(s) 18, 282
Tru9I TTAA 2 cut(s) 18, 282
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 147
TspGWI ACGGA 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.