Rorug01G0053300

Protein ENHANCED DISEASE RESISTANCE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001313
Physical Location & Seq
Reverse (-)
8799665 .. 8800371
707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0053300.1

Sequence Viewer

Length: 642 bp
ATGAGTGAACGGTCTCTTGACAGCCAGGCTCAAGGGGAAAATTTTCGACGTCCTGAATACAATTTCAGTAAAAATAGGAGAGCGTCAAGGGTTGACGATGAAGACTATTCTGATGCTGACATTATTAAGCCAAGCAGAGGGTTTGATGATTTTGATGATGAAGATGATGATATTGACAATTACGAGTTGGACACTCAAAACAGTGAAGGTCCAGACAATAATCTGCATGCTCGCAAAACGAACTCTCCATCTTACAATAAGCCATCTAAGTCTATGCATCGACGGGCAGCATTATCTGTCTCAGATGATGATGAAATTGATATAAATTCTGACGAAGACATTTCAGTTCTTCCCAACCGGAGATCATGTCATGTTGCTGATTCTAGATCAAGAGGTAGGGCTAGAGACTCAACTGGTCCATCAAAGAGAGTAAGCTTTGTATCTGATAATGAAGCTGGGCTCTACTCTGATATGGATGATGATCTAGATAAAAATATTACATCCAGACAAGGTAAACTGAACAAATTGGATTCTGGGAGAAAAGACTTTCAGAGGAGAATAAATTTTGATAGTGATGATGATTCTGTGTCTGGTTCAAACCAAATAGTTTCAAAGGTGCACAATTTAAATCCAGTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336 START

Protein Analysis

213

Amino Acids

24.16

Weight (kDa)

4.69

Isoelectric Point (pI)

60.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 52
AcsI RAATTY 3 cut(s) 40, 325, 562
AcyI GRCGYC 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 2 cut(s) 597, 612
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 2 cut(s) 435, 455
AluI AGCT 2 cut(s) 435, 455
Alw21I GWGCWC 1 cut(s) 621
Alw26I GTCTC 3 cut(s) 18, 304, 399
Alw44I GTGCAC 1 cut(s) 617
ApaLI GTGCAC 1 cut(s) 617
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 3 cut(s) 40, 325, 562
Asp700I GAANNNNTTC 1 cut(s) 42
AspS9I GGNCC 2 cut(s) 209, 416
AvaII GGWCC 2 cut(s) 209, 416
BaeGI GKGCMC 1 cut(s) 621
BanII GRGCYC 1 cut(s) 462
BbsI GAAGAC 2 cut(s) 108, 342
Bbv12I GWGCWC 1 cut(s) 621
BbvI GCAGC 1 cut(s) 299
BccI CCATC 3 cut(s) 256, 271, 427
BciT130I CCWGG 1 cut(s) 26
BcoDI GTCTC 3 cut(s) 18, 304, 399
BfaI CTAG 3 cut(s) 384, 402, 485
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 2 cut(s) 209, 416
BmgT120I GGNCC 2 cut(s) 209, 416
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 2 cut(s) 103, 286
BpiI GAAGAC 2 cut(s) 108, 342
BpuEI CTTGAG 1 cut(s) 15
BsaBI GATNNNNATC 1 cut(s) 480
BsaHI GRCGYC 1 cut(s) 49
BsaI GGTCTC 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 357
BsaXI ACNNNNNCTCC 4 cut(s) 229, 259, 352, 382
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 418, 632
Bse8I GATNNNNATC 1 cut(s) 480
BseBI CCWGG 1 cut(s) 26
BseGI GGATG 2 cut(s) 481, 500
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 2 cut(s) 418, 632
BseRI GAGGAG 1 cut(s) 568
BseSI GKGCMC 1 cut(s) 621
BseXI GCAGC 1 cut(s) 299
BseYI CCCAGC 1 cut(s) 455
BsiHKAI GWGCWC 1 cut(s) 621
BsiSI CCGG 1 cut(s) 358
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 3 cut(s) 18, 304, 399
Bso31I GGTCTC 1 cut(s) 18
Bsp1286I GDGCHC 2 cut(s) 462, 621
Bsp143I GATC 3 cut(s) 362, 386, 481
BspCNI CTCAG 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 18
BsrI ACTGG 2 cut(s) 418, 632
BssMI GATC 3 cut(s) 362, 386, 481
BssNI GRCGYC 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 2 cut(s) 12, 203
BstACI GRCGYC 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 228, 232
BstDEI CTNAG 2 cut(s) 267, 301
BstF5I GGATG 2 cut(s) 481, 500
BstKTI GATC 3 cut(s) 365, 389, 484
BstMAI GTCTC 3 cut(s) 18, 304, 399
BstMBI GATC 3 cut(s) 362, 386, 481
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 24
BstSLI GKGCMC 1 cut(s) 621
BstV1I GCAGC 1 cut(s) 299
BstV2I GAAGAC 2 cut(s) 108, 342
BtsCI GGATG 2 cut(s) 481, 500
BtsIMutI CAGTG 2 cut(s) 208, 639
Cac8I GCNNGC 2 cut(s) 228, 232
Cfr13I GGNCC 2 cut(s) 209, 416
CseI GACGC 1 cut(s) 72
CviAII CATG 3 cut(s) 227, 366, 371
CviJI RGCY 8 cut(s) 24, 29, 130, 262, 401, 435, 455, 460
CviKI_1 RGCY 8 cut(s) 24, 29, 130, 262, 401, 435, 455, 460
DdeI CTNAG 2 cut(s) 267, 301
DpnI GATC 3 cut(s) 364, 388, 483
DpnII GATC 3 cut(s) 362, 386, 481
DraI TTTAAA 1 cut(s) 627
Eco24I GRGCYC 1 cut(s) 462
Eco31I GGTCTC 1 cut(s) 18
Eco47I GGWCC 2 cut(s) 209, 416
EcoRII CCWGG 1 cut(s) 24
EcoT22I ATGCAT 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 462
FaeI CATG 3 cut(s) 230, 369, 374
FaiI YATR 6 cut(s) 228, 275, 323, 367, 372, 473
FatI CATG 3 cut(s) 226, 365, 370
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 2 cut(s) 487, 488
FriOI GRGCYC 1 cut(s) 462
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 3 cut(s) 384, 402, 485
GluI GCNGC 1 cut(s) 288
GsaI CCCAGC 1 cut(s) 459
HapII CCGG 1 cut(s) 358
HgaI GACGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 49
Hin1II CATG 3 cut(s) 230, 369, 374
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HindIII AAGCTT 1 cut(s) 433
HinfI GANTC 4 cut(s) 380, 407, 530, 581
HpaII CCGG 1 cut(s) 358
Hpy166II GTNNAC 4 cut(s) 8, 94, 515, 619
Hpy188I TCNGA 6 cut(s) 112, 304, 331, 445, 469, 552
Hpy188III TCNNGA 7 cut(s) 17, 53, 212, 384, 390, 485, 504
Hpy8I GTNNAC 4 cut(s) 8, 94, 515, 619
Hpy99I CGWCG 2 cut(s) 51, 285
HpyAV CCTTC 1 cut(s) 200
HpyCH4III ACNGT 2 cut(s) 12, 203
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 226, 277, 619
HpyF3I CTNAG 2 cut(s) 267, 301
HpySE526I ACGT 1 cut(s) 49
Hsp92I GRCGYC 1 cut(s) 49
Hsp92II CATG 3 cut(s) 230, 369, 374
Kzo9I GATC 3 cut(s) 362, 386, 481
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 2 cut(s) 103, 286
MaeI CTAG 3 cut(s) 384, 402, 485
MaeII ACGT 1 cut(s) 49
MalI GATC 3 cut(s) 364, 388, 483
MboI GATC 3 cut(s) 362, 386, 481
MboII GAAGA 4 cut(s) 113, 173, 341, 347
MhlI GDGCHC 2 cut(s) 462, 621
MluCI AATT 8 cut(s) 40, 61, 178, 315, 325, 524, 562, 622
MlyI GAGTC 1 cut(s) 401
MmeI TCCRAC 1 cut(s) 168
MnlI CCTC 3 cut(s) 131, 386, 546
Mph1103I ATGCAT 1 cut(s) 279
MroXI GAANNNNTTC 1 cut(s) 42
MseI TTAA 2 cut(s) 126, 626
MspI CCGG 1 cut(s) 358
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
NdeII GATC 3 cut(s) 362, 386, 481
NlaIII CATG 3 cut(s) 230, 369, 374
NsiI ATGCAT 1 cut(s) 279
NspI RCATGY 1 cut(s) 230
PaeI GCATGC 1 cut(s) 230
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 380, 530, 581
PkrI GCNGC 1 cut(s) 289
PleI GAGTC 1 cut(s) 401
PpsI GAGTC 1 cut(s) 401
Psp6I CCWGG 1 cut(s) 24
PspFI CCCAGC 1 cut(s) 455
PspGI CCWGG 1 cut(s) 24
PspPI GGNCC 2 cut(s) 209, 416
SaqAI TTAA 2 cut(s) 126, 626
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 3 cut(s) 362, 386, 481
Sau96I GGNCC 2 cut(s) 209, 416
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 2 cut(s) 462, 621
SetI ASST 7 cut(s) 52, 211, 397, 437, 457, 514, 618
SfaNI GCATC 2 cut(s) 103, 286
SinI GGWCC 2 cut(s) 209, 416
SmiI ATTTAAAT 1 cut(s) 627
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
SphI GCATGC 1 cut(s) 230
Sse9I AATT 8 cut(s) 40, 61, 178, 315, 325, 524, 562, 622
SspI AATATT 1 cut(s) 496
SspMI CTAG 3 cut(s) 384, 402, 485
StyD4I CCNGG 1 cut(s) 24
SwaI ATTTAAAT 1 cut(s) 627
TaaI ACNGT 2 cut(s) 12, 203
TaiI ACGT 1 cut(s) 52
TaqI TCGA 2 cut(s) 46, 280
TasI AATT 8 cut(s) 40, 61, 178, 315, 325, 524, 562, 622
TfiI GAWTC 3 cut(s) 380, 530, 581
Tru1I TTAA 2 cut(s) 126, 626
Tru9I TTAA 2 cut(s) 126, 626
TscAI CASTG 2 cut(s) 208, 639
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 4 cut(s) 114, 174, 327, 465
TspRI CASTG 2 cut(s) 208, 639
VneI GTGCAC 1 cut(s) 617
VpaK11BI GGWCC 2 cut(s) 209, 416
XapI RAATTY 3 cut(s) 40, 325, 562
XbaI TCTAGA 2 cut(s) 383, 484
XceI RCATGY 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 3 cut(s) 384, 402, 485
ZraI GACGTC 1 cut(s) 50
Zsp2I ATGCAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.