Rorug01G0053500

Protein ENHANCED DISEASE RESISTANCE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001313
Physical Location & Seq
Forward (+)
8812055 .. 8815067
3013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0053500.1

Sequence Viewer

Length: 672 bp
ATGAATATGGTCGTATTGAGGAAGCAGATGAGGTTCAGTAAAGAGAATCTTGTCCTAGGTTTCAGACCTTACAAGCTAAGGGCTGTTGATGCGCTTCGTCAGGCACTTAACTTATACCAGGAGCTTCTTCCTCCCAAGCACGATGATTATCATATGATGCTGAGGAACAAAGTGGATGTTAGAGAACTTGCAATTCAATTTGGGTGTGTTCAGATCATTCTCTTTGTTCCAAAGGGTTTATTCCTACATTTCCTCCATCTAAGGACTGAGGCACAAGGGAAGATCTCTAGTGGTGCTCACCCTCCTCATGAAGCAGATGGTACACACAATACTTATTTCTTCAGTTGTGTTTTTGTTAATATGCAGATGGTAGCTGATCAGTTCTATGACATTCTACATAAGCACTGCAGAAAAGTAGAAGTTAAACTTGTAAAATGCATTGTTCAAAGTATGATTGTAGATATATCCTTCAATCAGTTAGGAGGACTTTGTACACTACGCTTTCTTGAACAGGTTGATCACTATATTGGCAAAGATCATATTTTCAAACGCAGCATTATTCTGATAAAAGTGTTGTGCTACTATGAGAGTCGTATTCTTGGTGCTCATCATGGTTTATTTTCAACATATGCTTTGGAAACATATGCTTTGATTGGGAGAAATATTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336 START

Protein Analysis

223

Amino Acids

25.94

Weight (kDa)

9.2

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP-OAS1 PF26180 176 - 217 9.7e-20 PAP/OAS1 substrate-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 325
AfaI GTAC 2 cut(s) 322, 493
AgsI TTSAA 6 cut(s) 197, 446, 472, 509, 547, 624
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 3 cut(s) 76, 124, 374
AluI AGCT 3 cut(s) 76, 124, 374
Alw21I GWGCWC 2 cut(s) 298, 607
ApeKI GCWGC 1 cut(s) 552
AspA2I CCTAGG 1 cut(s) 55
AspLEI GCGC 1 cut(s) 94
AsuHPI GGTGA 1 cut(s) 290
AvrII CCTAGG 1 cut(s) 55
Bbv12I GWGCWC 2 cut(s) 298, 607
BbvCI CCTCAGC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 564
BccI CCATC 3 cut(s) 264, 311, 361
BciT130I CCWGG 1 cut(s) 119
BclI TGATCA 2 cut(s) 376, 517
BfaI CTAG 2 cut(s) 56, 288
BfmI CTRYAG 1 cut(s) 406
BglII AGATCT 1 cut(s) 282
BisI GCNGC 1 cut(s) 553
BlnI CCTAGG 1 cut(s) 55
BlsI GCNGC 1 cut(s) 554
Bme1390I CCNGG 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 2 cut(s) 79, 147
Bpu10I CCTNAGC 2 cut(s) 77, 161
BsaBI GATNNNNATC 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 55
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bse8I GATNNNNATC 1 cut(s) 147
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 181
BseJI GATNNNNATC 1 cut(s) 147
BseMII CTCAG 2 cut(s) 152, 258
BseRI GAGGAG 1 cut(s) 294
BseXI GCAGC 1 cut(s) 564
BsiHKAI GWGCWC 2 cut(s) 298, 607
Bsp1286I GDGCHC 2 cut(s) 298, 607
Bsp1407I TGTACA 1 cut(s) 491
Bsp143I GATC 5 cut(s) 213, 282, 376, 517, 535
BspCNI CTCAG 2 cut(s) 153, 259
BspHI TCATGA 1 cut(s) 307
BspMAI CTGCAG 1 cut(s) 410
BsrGI TGTACA 1 cut(s) 491
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 5 cut(s) 213, 282, 376, 517, 535
BssT1I CCWWGG 1 cut(s) 55
Bst2UI CCWGG 1 cut(s) 119
BstAUI TGTACA 1 cut(s) 491
BstDEI CTNAG 4 cut(s) 77, 161, 260, 267
BstF5I GGATG 1 cut(s) 181
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 5 cut(s) 216, 285, 379, 520, 538
BstMBI GATC 5 cut(s) 213, 282, 376, 517, 535
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 406
BstV1I GCAGC 1 cut(s) 564
BstX2I RGATCY 1 cut(s) 282
BstYI RGATCY 1 cut(s) 282
BtsCI GGATG 1 cut(s) 181
BtsI GCAGTG 1 cut(s) 403
BtsIMutI CAGTG 1 cut(s) 403
CciI TCATGA 1 cut(s) 307
CfoI GCGC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 321, 492
CviAII CATG 2 cut(s) 308, 611
CviJI RGCY 4 cut(s) 76, 83, 124, 374
CviKI_1 RGCY 4 cut(s) 76, 83, 124, 374
CviQI GTAC 2 cut(s) 321, 492
DdeI CTNAG 4 cut(s) 77, 161, 260, 267
DpnI GATC 5 cut(s) 215, 284, 378, 519, 537
DpnII GATC 5 cut(s) 213, 282, 376, 517, 535
Eco130I CCWWGG 1 cut(s) 55
Eco57I CTGAAG 1 cut(s) 325
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 55
EcoT22I ATGCAT 1 cut(s) 440
ErhI CCWWGG 1 cut(s) 55
FaeI CATG 2 cut(s) 311, 614
FalI AAGNNNNNCTT 4 cut(s) 33, 65, 411, 443
FatI CATG 2 cut(s) 307, 610
FauNDI CATATG 3 cut(s) 153, 628, 643
FbaI TGATCA 2 cut(s) 376, 517
Fnu4HI GCNGC 1 cut(s) 553
FokI GGATG 1 cut(s) 188
Fsp4HI GCNGC 1 cut(s) 553
FspBI CTAG 2 cut(s) 56, 288
GlaI GCGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 553
HhaI GCGC 1 cut(s) 94
Hin1II CATG 2 cut(s) 311, 614
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HinfI GANTC 2 cut(s) 46, 589
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 323, 494
Hpy188I TCNGA 3 cut(s) 65, 213, 564
Hpy188III TCNNGA 2 cut(s) 308, 506
Hpy8I GTNNAC 2 cut(s) 323, 494
HpyAV CCTTC 1 cut(s) 478
HpyCH4V TGCA 4 cut(s) 191, 364, 408, 438
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 4 cut(s) 77, 161, 260, 267
Hsp92II CATG 2 cut(s) 311, 614
HspAI GCGC 1 cut(s) 92
Ksp22I TGATCA 2 cut(s) 376, 517
Kzo9I GATC 5 cut(s) 213, 282, 376, 517, 535
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 4 cut(s) 86, 104, 131, 497
Lsp1109I GCAGC 1 cut(s) 564
LweI GCATC 2 cut(s) 79, 147
MaeI CTAG 2 cut(s) 56, 288
MalI GATC 5 cut(s) 215, 284, 378, 519, 537
MboI GATC 5 cut(s) 213, 282, 376, 517, 535
MboII GAAGA 3 cut(s) 119, 292, 331
MflI RGATCY 1 cut(s) 282
MhlI GDGCHC 2 cut(s) 298, 607
MluCI AATT 2 cut(s) 192, 197
MlyI GAGTC 1 cut(s) 598
MnlI CCTC 9 cut(s) 12, 24, 141, 156, 262, 263, 312, 315, 476
Mph1103I ATGCAT 1 cut(s) 440
MseI TTAA 3 cut(s) 108, 357, 423
MspR9I CCNGG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeI CATATG 3 cut(s) 153, 628, 643
NdeII GATC 5 cut(s) 213, 282, 376, 517, 535
NlaIII CATG 2 cut(s) 311, 614
NsiI ATGCAT 1 cut(s) 440
PagI TCATGA 1 cut(s) 307
PfeI GAWTC 1 cut(s) 46
PkrI GCNGC 1 cut(s) 554
PleI GAGTC 1 cut(s) 597
PpsI GAGTC 1 cut(s) 597
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PstI CTGCAG 1 cut(s) 410
PsuI RGATCY 1 cut(s) 282
RsaI GTAC 2 cut(s) 322, 493
RsaNI GTAC 2 cut(s) 321, 492
SaqAI TTAA 3 cut(s) 108, 357, 423
SatI GCNGC 1 cut(s) 553
Sau3AI GATC 5 cut(s) 213, 282, 376, 517, 535
SchI GAGTC 1 cut(s) 598
ScrFI CCNGG 1 cut(s) 119
SduI GDGCHC 2 cut(s) 298, 607
SetI ASST 7 cut(s) 35, 61, 70, 78, 126, 376, 516
SfaNI GCATC 2 cut(s) 79, 147
SfcI CTRYAG 1 cut(s) 406
Sse9I AATT 2 cut(s) 192, 197
SspI AATATT 1 cut(s) 664
SspMI CTAG 2 cut(s) 56, 288
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 55
TasI AATT 2 cut(s) 192, 197
TatI WGTACW 1 cut(s) 491
TfiI GAWTC 1 cut(s) 46
Tru1I TTAA 3 cut(s) 108, 357, 423
Tru9I TTAA 3 cut(s) 108, 357, 423
TscAI CASTG 1 cut(s) 410
TseI GCWGC 1 cut(s) 552
TspDTI ATGAA 2 cut(s) 17, 324
TspRI CASTG 1 cut(s) 410
XmaJI CCTAGG 1 cut(s) 55
XspI CTAG 2 cut(s) 56, 288
Zsp2I ATGCAT 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.