Rmu_sc0021009.1_g000001

Protein ENHANCED DISEASE RESISTANCE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021009.1
OG0001313
Physical Location & Seq
Forward (+)
1 .. 1597
1597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021009.1_g000001.1.cds

Sequence Viewer

Length: 1597 bp
ggcgtacgagtggaaatgtgtgcgaacagttaatggtgttagaatatttcaagatgttgctaactctgacaggggtaaaggagttatcgtcaaggccgttggagttatcgatgcaagtgcagatactgcttttgaagtgcttttgaaccttgagcgacatcagagatatgagtgggatatgctgacaggtgatttggagatggtagattcttttgatggacactttgatgttgtctatgggacgtacagtcctatgtatctttctaggtgggactccaagagagattttatcttttctaggcaatggttccgcggacaagatggaacatacacaatcttgcaatccccagctgttcataagaagaagcctcggaggtctggatatcgtcgtacaaaactaaatccatctacttgggagattagaaattttaacacatccatggatactaatactccaagatgtcttgtcacacagatggtggagatacgttctgttggctggtggaagtggaagaaaaatcacttctcaaagtttgaaaaaagtgtcccttatgcattgttgtgtcaagtggcaggtctcaaggaatatattgcagcaaatcctgcactcaaatttaaatctgctgcttcagttatccaatcaaaggtatctccggtttctgtttccagtggtgaatttgaggcagacgcagcgcatgatgagttttacgatgcaatgtctgcagactcttcttcttctgatgaagatagtgacactgaatttgaaaataaagattcaaaagtgaaactgaagaatgtggcatgggccatcacaagcttagctttgaagcgaagtttatcagatgctaataaggaacttgatcctaaagctgctcctttcatgattgatccaagccagttccatggttccttgcgcaaagcaagggatgaggccgacatggactgctggacatctccaagtggcatggggttcatgattagaggaaagacctacctaaaggatagttccaaggtaacaggaggagatcctcttctcaagctcatagcagtagattggttcaaagttgataaaagcatagatagaattgctctgcatcccaagtgtcttatgcagtcagaagctggaaagaagcttccatttgtactagttgttaatctccaggttccagcaacaccaaactatagtttggtactttactacgcttctgacagacctgtaaatcctaattctttgcttgctaaatttgtggatgggagcgatatgtttcgtaatgcaagatttaaactaattccaagtattgtggatggatattggatggtcaagcgtgctgttggaagcaaggcttgcctactgggcaaagctgtatcctgcaagtatctgaggcaagacaactttctcgagattgatgtggatattggatcatcttccgtggcgaggagtatcatcggacttgtcctcggatatgtcaccagcatagtagttgaccttgccattttgatagaggcgagggaggaggcagacttgccggagtacattcttggaactgttcgacttaatcgtttgaagattgattcagctgttcatttggaggcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336 START

Protein Analysis

531

Amino Acids

59.63

Weight (kDa)

8.58

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 915
Acc36I ACCTGC 1 cut(s) 564
AccII CGCG 1 cut(s) 313
AciI CCGC 2 cut(s) 311, 313
AclWI GGATC 4 cut(s) 855, 882, 1020, 1427
AcsI RAATTY 5 cut(s) 425, 612, 675, 759, 1242
AcuI CTGAAG 2 cut(s) 613, 810
AfaI GTAC 6 cut(s) 6, 246, 392, 1144, 1192, 1533
AfiI CCNNNNNNNGG 2 cut(s) 644, 1435
AgsI TTSAA 9 cut(s) 51, 135, 146, 537, 765, 778, 827, 1061, 1565
AhdI GACNNNNNGTC 1 cut(s) 247
AhlI ACTAGT 1 cut(s) 1145
AjnI CCWGG 1 cut(s) 1159
AluBI AGCT 9 cut(s) 351, 817, 822, 870, 1040, 1122, 1133, 1362, 1578
AluI AGCT 9 cut(s) 351, 817, 822, 870, 1040, 1122, 1133, 1362, 1578
Alw26I GTCTC 1 cut(s) 582
AlwI GGATC 4 cut(s) 855, 882, 1020, 1427
AlwNI CAGNNNCTG 2 cut(s) 126, 1122
Ama87I CYCGRG 1 cut(s) 1398
AoxI GGCC 3 cut(s) 94, 805, 931
ApeKI GCWGC 4 cut(s) 594, 624, 690, 870
ApoI RAATTY 5 cut(s) 425, 612, 675, 759, 1242
ArsI GACNNNNNNTTYG 4 cut(s) 176, 208, 744, 776
AspLEI GCGC 2 cut(s) 695, 916
AspS9I GGNCC 1 cut(s) 805
AsuHPI GGTGA 3 cut(s) 201, 684, 1460
AvaI CYCGRG 1 cut(s) 1398
BbvI GCAGC 4 cut(s) 606, 611, 702, 857
BccI CCATC 9 cut(s) 194, 210, 315, 413, 470, 816, 1245, 1299, 1310
BceAI ACGGC 1 cut(s) 81
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BciT130I CCWGG 1 cut(s) 1161
BciVI GTATCC 2 cut(s) 437, 1376
BcoDI GTCTC 1 cut(s) 582
BcuI ACTAGT 1 cut(s) 1145
BfaI CTAG 3 cut(s) 265, 298, 1146
BfmI CTRYAG 2 cut(s) 721, 1181
BfuAI ACCTGC 1 cut(s) 564
BfuI GTATCC 2 cut(s) 437, 1376
BglI GCCNNNNNGGC 1 cut(s) 1354
BisI GCNGC 4 cut(s) 595, 625, 691, 871
BlpI GCTNAGC 1 cut(s) 818
BlsI GCNGC 4 cut(s) 596, 626, 692, 872
Bme1390I CCNGG 1 cut(s) 1161
BmeRI GACNNNNNGTC 1 cut(s) 247
BmeT110I CYCGRG 1 cut(s) 1398
BmgT120I GGNCC 1 cut(s) 805
BmiI GGNNCC 3 cut(s) 309, 908, 1165
BmrFI CCNGG 1 cut(s) 1161
BmrI ACTGGG 1 cut(s) 1362
BmsI GCATC 4 cut(s) 101, 701, 833, 1103
BmuI ACTGGG 1 cut(s) 1362
BpmI CTGGAG 1 cut(s) 1143
Bpu1102I GCTNAGC 1 cut(s) 818
BpuEI CTTGAG 3 cut(s) 171, 564, 1020
Bsa29I ATCGAT 1 cut(s) 109
BsaI GGTCTC 1 cut(s) 582
BsaJI CCNNGG 7 cut(s) 311, 369, 439, 902, 1009, 1429, 1457
BsaWI WCCGGW 1 cut(s) 653
BsaXI ACNNNNNCTCC 4 cut(s) 73, 103, 437, 467
Bsc4I CCNNNNNNNGG 2 cut(s) 644, 1435
Bse1I ACTGG 3 cut(s) 667, 896, 1357
Bse3DI GCAATG 2 cut(s) 309, 721
BseBI CCWGG 1 cut(s) 1161
BseCI ATCGAT 1 cut(s) 109
BseDI CCNNGG 7 cut(s) 311, 369, 439, 902, 1009, 1429, 1457
BseGI GGATG 6 cut(s) 435, 932, 1094, 1256, 1310, 1321
BseLI CCNNNNNNNGG 2 cut(s) 644, 1435
BseMI GCAATG 2 cut(s) 309, 721
BseMII CTCAG 1 cut(s) 1371
BseNI ACTGG 3 cut(s) 667, 896, 1357
BseRI GAGGAG 3 cut(s) 1036, 1451, 1527
BseXI GCAGC 4 cut(s) 606, 611, 702, 857
BseYI CCCAGC 1 cut(s) 347
BsgI GTGCAG 2 cut(s) 139, 589
Bsh1236I CGCG 1 cut(s) 313
BshFI GGCC 3 cut(s) 96, 807, 933
BshVI ATCGAT 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 1398
BsiSI CCGG 2 cut(s) 654, 1527
BsiWI CGTACG 1 cut(s) 4
BslFI GGGAC 3 cut(s) 254, 285, 531
BslI CCNNNNNNNGG 2 cut(s) 644, 1435
BsmAI GTCTC 1 cut(s) 582
BsmFI GGGAC 3 cut(s) 254, 285, 531
BsnI GGCC 3 cut(s) 96, 807, 933
Bso31I GGTCTC 1 cut(s) 582
BsoBI CYCGRG 1 cut(s) 1398
Bsp143I GATC 4 cut(s) 860, 887, 1025, 1419
Bsp1720I GCTNAGC 1 cut(s) 818
Bsp19I CCATGG 2 cut(s) 439, 902
BspACI CCGC 2 cut(s) 311, 313
BspANI GGCC 3 cut(s) 96, 807, 933
BspCNI CTCAG 1 cut(s) 1372
BspDI ATCGAT 1 cut(s) 109
BspFNI CGCG 1 cut(s) 313
BspHI TCATGA 2 cut(s) 880, 973
BspLI GGNNCC 3 cut(s) 309, 908, 1165
BspMAI CTGCAG 1 cut(s) 725
BspMI ACCTGC 1 cut(s) 564
BspPI GGATC 4 cut(s) 855, 882, 1020, 1427
BspTNI GGTCTC 1 cut(s) 582
BsrDI GCAATG 2 cut(s) 309, 721
BsrI ACTGG 3 cut(s) 667, 896, 1357
BssECI CCNNGG 7 cut(s) 311, 369, 439, 902, 1009, 1429, 1457
BssMI GATC 4 cut(s) 860, 887, 1025, 1419
BssT1I CCWWGG 3 cut(s) 439, 902, 1009
Bst2UI CCWGG 1 cut(s) 1161
Bst4CI ACNGT 3 cut(s) 29, 249, 1547
Bst6I CTCTTC 2 cut(s) 734, 1036
BstAPI GCANNNNNTGC 4 cut(s) 126, 603, 720, 1345
BstC8I GCNNGC 3 cut(s) 1237, 1327, 1346
BstDEI CTNAG 2 cut(s) 818, 1380
BstDSI CCRYGG 4 cut(s) 311, 439, 902, 1429
BstF5I GGATG 6 cut(s) 435, 932, 1094, 1256, 1310, 1321
BstFNI CGCG 1 cut(s) 313
BstHHI GCGC 2 cut(s) 695, 916
BstKTI GATC 4 cut(s) 863, 890, 1028, 1422
BstMAI GTCTC 1 cut(s) 582
BstMBI GATC 4 cut(s) 860, 887, 1025, 1419
BstMWI GCNNNNNNNGC 6 cut(s) 126, 603, 690, 720, 1345, 1354
BstNI CCWGG 1 cut(s) 1161
BstSCI CCNGG 1 cut(s) 1159
BstSFI CTRYAG 2 cut(s) 721, 1181
BstUI CGCG 1 cut(s) 313
BstV1I GCAGC 4 cut(s) 606, 611, 702, 857
BstX2I RGATCY 1 cut(s) 1025
BstXI CCANNNNNNTGG 2 cut(s) 412, 903
BstYI RGATCY 1 cut(s) 1025
Bsu15I ATCGAT 1 cut(s) 109
BsuI GTATCC 2 cut(s) 437, 1376
BsuRI GGCC 3 cut(s) 96, 807, 933
BsuTUI ATCGAT 1 cut(s) 109
BtgI CCRYGG 4 cut(s) 311, 439, 902, 1429
BtsCI GGATG 6 cut(s) 435, 932, 1094, 1256, 1310, 1321
BtsIMutI CAGTG 2 cut(s) 674, 754
BveI ACCTGC 1 cut(s) 564
Cac8I GCNNGC 3 cut(s) 1237, 1327, 1346
CaiI CAGNNNCTG 2 cut(s) 126, 1122
CciI TCATGA 2 cut(s) 880, 973
CfoI GCGC 2 cut(s) 695, 916
Cfr13I GGNCC 1 cut(s) 805
Cfr42I CCGCGG 1 cut(s) 314
ClaI ATCGAT 1 cut(s) 109
CseI GACGC 1 cut(s) 696
Csp6I GTAC 6 cut(s) 5, 245, 391, 1143, 1191, 1532
CspCI CAANNNNNGTGG 2 cut(s) 1282, 1317
CviAII CATG 9 cut(s) 440, 696, 802, 881, 903, 938, 965, 974, 1594
CviQI GTAC 6 cut(s) 5, 245, 391, 1143, 1191, 1532
DdeI CTNAG 2 cut(s) 818, 1380
DpnI GATC 4 cut(s) 862, 889, 1027, 1421
DpnII GATC 4 cut(s) 860, 887, 1025, 1419
DraI TTTAAA 2 cut(s) 617, 1283
DriI GACNNNNNGTC 1 cut(s) 247
Eam1104I CTCTTC 2 cut(s) 734, 1036
Eam1105I GACNNNNNGTC 1 cut(s) 247
EarI CTCTTC 2 cut(s) 734, 1036
Eco130I CCWWGG 3 cut(s) 439, 902, 1009
Eco31I GGTCTC 1 cut(s) 582
Eco32I GATATC 1 cut(s) 384
Eco57I CTGAAG 2 cut(s) 613, 810
Eco88I CYCGRG 1 cut(s) 1398
EcoRII CCWGG 1 cut(s) 1159
EcoRV GATATC 1 cut(s) 384
EcoT14I CCWWGG 3 cut(s) 439, 902, 1009
EcoT22I ATGCAT 1 cut(s) 557
ErhI CCWWGG 3 cut(s) 439, 902, 1009
FaeI CATG 9 cut(s) 443, 699, 805, 884, 906, 941, 968, 977, 1597
FalI AAGNNNNNCTT 6 cut(s) 533, 565, 806, 838, 1328, 1360
FaqI GGGAC 3 cut(s) 254, 285, 531
FatI CATG 9 cut(s) 439, 695, 801, 880, 902, 937, 964, 973, 1593
Fnu4HI GCNGC 4 cut(s) 595, 625, 691, 871
FokI GGATG 6 cut(s) 422, 939, 1081, 1263, 1317, 1328
Fsp4HI GCNGC 4 cut(s) 595, 625, 691, 871
FspBI CTAG 3 cut(s) 265, 298, 1146
FspI TGCGCA 1 cut(s) 915
GlaI GCGC 2 cut(s) 694, 915
GluI GCNGC 4 cut(s) 595, 625, 691, 871
GsaI CCCAGC 1 cut(s) 351
GsuI CTGGAG 1 cut(s) 1143
HaeIII GGCC 3 cut(s) 96, 807, 933
HapII CCGG 2 cut(s) 654, 1527
HgaI GACGC 1 cut(s) 696
HhaI GCGC 2 cut(s) 695, 916
Hin1II CATG 9 cut(s) 443, 699, 805, 884, 906, 941, 968, 977, 1597
Hin6I GCGC 2 cut(s) 693, 914
HinP1I GCGC 2 cut(s) 693, 914
HincII GTYRAC 1 cut(s) 1484
HindII GTYRAC 1 cut(s) 1484
HindIII AAGCTT 2 cut(s) 815, 1131
HinfI GANTC 5 cut(s) 207, 273, 726, 774, 1572
HpaII CCGG 2 cut(s) 654, 1527
HphI GGTGA 3 cut(s) 201, 684, 1460
Hpy166II GTNNAC 1 cut(s) 1484
Hpy188III TCNNGA 6 cut(s) 51, 379, 881, 974, 1398, 1400
Hpy8I GTNNAC 1 cut(s) 1484
Hpy99I CGWCG 1 cut(s) 391
HpyCH4III ACNGT 3 cut(s) 29, 249, 1547
HpyCH4IV ACGT 2 cut(s) 243, 488
HpyF10VI GCNNNNNNNGC 6 cut(s) 126, 603, 690, 720, 1345, 1354
HpyF3I CTNAG 2 cut(s) 818, 1380
HpySE526I ACGT 2 cut(s) 243, 488
Hsp92II CATG 9 cut(s) 443, 699, 805, 884, 906, 941, 968, 977, 1597
HspAI GCGC 2 cut(s) 693, 914
KspI CCGCGG 1 cut(s) 314
Kzo9I GATC 4 cut(s) 860, 887, 1025, 1419
LmnI GCTCC 2 cut(s) 878, 1255
Lsp1109I GCAGC 4 cut(s) 606, 611, 702, 857
LweI GCATC 4 cut(s) 101, 701, 833, 1103
MaeI CTAG 3 cut(s) 265, 298, 1146
MaeII ACGT 2 cut(s) 243, 488
MaeIII GTNAC 4 cut(s) 467, 750, 1013, 1466
MalI GATC 4 cut(s) 862, 889, 1027, 1421
MboI GATC 4 cut(s) 860, 887, 1025, 1419
MflI RGATCY 1 cut(s) 1025
MluCI AATT 8 cut(s) 425, 612, 675, 759, 1084, 1226, 1242, 1288
MlyI GAGTC 2 cut(s) 267, 720
MmeI TCCRAC 2 cut(s) 80, 1313
Mph1103I ATGCAT 1 cut(s) 557
MseI TTAA 6 cut(s) 31, 430, 616, 1153, 1282, 1555
MslI CAYNNNNRTG 4 cut(s) 226, 438, 474, 560
MspA1I CMGCKG 3 cut(s) 313, 351, 1578
MspI CCGG 2 cut(s) 654, 1527
MspR9I CCNGG 1 cut(s) 1161
MvaI CCWGG 1 cut(s) 1161
MvnI CGCG 1 cut(s) 313
MwoI GCNNNNNNNGC 6 cut(s) 126, 603, 690, 720, 1345, 1354
NcoI CCATGG 2 cut(s) 439, 902
NdeII GATC 4 cut(s) 860, 887, 1025, 1419
NlaIII CATG 9 cut(s) 443, 699, 805, 884, 906, 941, 968, 977, 1597
NlaIV GGNNCC 3 cut(s) 309, 908, 1165
NmuCI GTSAC 3 cut(s) 467, 750, 1466
NsbI TGCGCA 1 cut(s) 915
NsiI ATGCAT 1 cut(s) 557
PaeR7I CTCGAG 1 cut(s) 1398
PagI TCATGA 2 cut(s) 880, 973
PcsI WCGNNNNNNNCGW 2 cut(s) 94, 1556
PfeI GAWTC 3 cut(s) 207, 774, 1572
Pfl23II CGTACG 1 cut(s) 4
PkrI GCNGC 4 cut(s) 596, 626, 692, 872
PleI GAGTC 2 cut(s) 267, 720
PpsI GAGTC 2 cut(s) 267, 720
Psp6I CCWGG 1 cut(s) 1159
PspFI CCCAGC 1 cut(s) 347
PspGI CCWGG 1 cut(s) 1159
PspLI CGTACG 1 cut(s) 4
PspN4I GGNNCC 3 cut(s) 309, 908, 1165
PspPI GGNCC 1 cut(s) 805
PstI CTGCAG 1 cut(s) 725
PstNI CAGNNNCTG 2 cut(s) 126, 1122
PsuI RGATCY 1 cut(s) 1025
PvuII CAGCTG 2 cut(s) 351, 1578
RsaI GTAC 6 cut(s) 6, 246, 392, 1144, 1192, 1533
RsaNI GTAC 6 cut(s) 5, 245, 391, 1143, 1191, 1532
RseI CAYNNNNRTG 4 cut(s) 226, 438, 474, 560
SacII CCGCGG 1 cut(s) 314
SaqAI TTAA 6 cut(s) 31, 430, 616, 1153, 1282, 1555
SatI GCNGC 4 cut(s) 595, 625, 691, 871
Sau3AI GATC 4 cut(s) 860, 887, 1025, 1419
Sau96I GGNCC 1 cut(s) 805
SchI GAGTC 2 cut(s) 267, 720
ScrFI CCNGG 1 cut(s) 1161
SfaNI GCATC 4 cut(s) 101, 701, 833, 1103
SfcI CTRYAG 2 cut(s) 721, 1181
Sfr274I CTCGAG 1 cut(s) 1398
Sfr303I CCGCGG 1 cut(s) 314
SgrBI CCGCGG 1 cut(s) 314
SlaI CTCGAG 1 cut(s) 1398
SmiI ATTTAAAT 1 cut(s) 617
SmiMI CAYNNNNRTG 4 cut(s) 226, 438, 474, 560
SmlI CTYRAG 4 cut(s) 150, 579, 1035, 1398
SmoI CTYRAG 4 cut(s) 150, 579, 1035, 1398
SpeI ACTAGT 1 cut(s) 1145
Sse9I AATT 8 cut(s) 425, 612, 675, 759, 1084, 1226, 1242, 1288
SsiI CCGC 2 cut(s) 311, 313
SspI AATATT 1 cut(s) 46
SspMI CTAG 3 cut(s) 265, 298, 1146
StyD4I CCNGG 1 cut(s) 1159
StyI CCWWGG 3 cut(s) 439, 902, 1009
SwaI ATTTAAAT 1 cut(s) 617
TaaI ACNGT 3 cut(s) 29, 249, 1547
TaiI ACGT 2 cut(s) 246, 491
TaqI TCGA 3 cut(s) 109, 1399, 1550
TasI AATT 8 cut(s) 425, 612, 675, 759, 1084, 1226, 1242, 1288
TatI WGTACW 2 cut(s) 1142, 1531
TfiI GAWTC 3 cut(s) 207, 774, 1572
Tru1I TTAA 6 cut(s) 31, 430, 616, 1153, 1282, 1555
Tru9I TTAA 6 cut(s) 31, 430, 616, 1153, 1282, 1555
TscAI CASTG 2 cut(s) 674, 761
TseFI GTSAC 3 cut(s) 467, 750, 1466
TseI GCWGC 4 cut(s) 594, 624, 690, 870
Tsp45I GTSAC 3 cut(s) 467, 750, 1466
TspDTI ATGAA 5 cut(s) 345, 757, 869, 962, 1572
TspGWI ACGGA 1 cut(s) 1418
TspRI CASTG 2 cut(s) 674, 761
XapI RAATTY 5 cut(s) 425, 612, 675, 759, 1242
XhoI CTCGAG 1 cut(s) 1398
XspI CTAG 3 cut(s) 265, 298, 1146
Zsp2I ATGCAT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.