Rorug01G0053400

Protein ENHANCED DISEASE RESISTANCE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001313
Physical Location & Seq
Forward (+)
8803243 .. 8803953
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0053400.1

Sequence Viewer

Length: 711 bp
ATGGCTGTGTGCAGCCTTCTCTGGTTCACATGGACTGAACGTAATAGAATCAGAAACAATGGCTGCTGTAAGATTAATTTGGGGCGCTTTACACAGTGTTTCATCCTAGTTCTGAAGGAAGCTGCTCAGCTAGTCTTTAAACCTTATTCCAATTCTACTTCTGCTCTTCCAATCTTTCTATTGCTGGAATTATCACCGCTGCGGTGCAGTGCACAGTCTTTCAAGCCTGCGACTTGGATGGCTCCTCCTGCATCTTGGTTGAAAGTGAACACAGATAGGTCCTTTAGAGATGTTACAAGCGCTGGATATGGTGGTATTTTTAGGGATGCAGATGGTAATTTTGTGGGGGCTTTTTCAGCCAGAGTTGACGTCCCTAGTGCCATGGATGCTGAGGTACTTGCTGTTATTGAGGTCATTCAGGTGGCTTGGGTTCGGCGTTGGACTCATATATGGCTTGAGACGGACTCAATGCTTGTGTTACATTATTTTCGAAACCCAGGTCTTATTCCTTGGCATAATTGTTTGTTTCAAGCTCGTCAACTTACTTTTCATGTCTCACATATATATCGAGAAGGCAATAGTGTTGCAGATAAGCTAGCAAATTATGGAGCTTTGAATGCGGGATCTGTCTGGTGGGCTTCCCTTCCTTCGTTCATCAGTACTCAATTCAGTCATGATTTTAATTCACGTACTAGTTATCTATTCCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336 START

Protein Analysis

236

Amino Acids

26.81

Weight (kDa)

8.98

Isoelectric Point (pI)

31.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 99 - 202 1.7e-16 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 372
AciI CCGC 3 cut(s) 197, 202, 620
AclWI GGATC 1 cut(s) 631
AcuI CTGAAG 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 369
AfaI GTAC 3 cut(s) 396, 661, 691
AfeI AGCGCT 1 cut(s) 301
AgsI TTSAA 4 cut(s) 223, 262, 530, 616
AhlI ACTAGT 1 cut(s) 692
AjnI CCWGG 1 cut(s) 496
AluBI AGCT 5 cut(s) 122, 130, 533, 595, 611
AluI AGCT 5 cut(s) 122, 130, 533, 595, 611
Alw21I GWGCWC 1 cut(s) 214
Alw26I GTCTC 2 cut(s) 452, 559
Alw44I GTGCAC 1 cut(s) 210
AlwI GGATC 1 cut(s) 631
Aor51HI AGCGCT 1 cut(s) 301
ApaLI GTGCAC 1 cut(s) 210
ApeKI GCWGC 4 cut(s) 12, 63, 122, 199
ArsI GACNNNNNNTTYG 2 cut(s) 484, 516
AseI ATTAAT 1 cut(s) 75
AspLEI GCGC 2 cut(s) 87, 302
AspS9I GGNCC 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 186
AsuII TTCGAA 1 cut(s) 490
AsuNHI GCTAGC 1 cut(s) 595
AvaII GGWCC 1 cut(s) 279
BaeGI GKGCMC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 214
BbvCI CCTCAGC 1 cut(s) 390
BbvI GCAGC 4 cut(s) 24, 50, 109, 186
BccI CCATC 2 cut(s) 232, 326
BciT130I CCWGG 1 cut(s) 498
BcoDI GTCTC 2 cut(s) 452, 559
BcuI ACTAGT 1 cut(s) 692
BfaI CTAG 5 cut(s) 107, 131, 375, 596, 693
BfoI RGCGCY 2 cut(s) 88, 303
BisI GCNGC 4 cut(s) 13, 64, 123, 200
BlpI GCTNAGC 1 cut(s) 126
BlsI GCNGC 4 cut(s) 14, 65, 124, 201
BmcAI AGTACT 1 cut(s) 661
Bme1390I CCNGG 1 cut(s) 498
Bme18I GGWCC 1 cut(s) 279
BmgT120I GGNCC 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 498
BmsI GCATC 3 cut(s) 260, 316, 376
BmtI GCTAGC 1 cut(s) 599
BplI GAGNNNNNCTC 2 cut(s) 449, 481
Bpu10I CCTNAGC 1 cut(s) 390
Bpu1102I GCTNAGC 1 cut(s) 126
Bpu14I TTCGAA 1 cut(s) 490
BpuEI CTTGAG 1 cut(s) 476
BsaAI YACGTR 1 cut(s) 689
BsaHI GRCGYC 1 cut(s) 369
BsaJI CCNNGG 3 cut(s) 381, 496, 509
BseBI CCWGG 1 cut(s) 498
BseDI CCNNGG 3 cut(s) 381, 496, 509
BseGI GGATG 4 cut(s) 102, 243, 331, 391
BseMII CTCAG 2 cut(s) 140, 381
BseRI GAGGAG 1 cut(s) 234
BseSI GKGCMC 1 cut(s) 214
BseXI GCAGC 4 cut(s) 24, 50, 109, 186
BsgI GTGCAG 2 cut(s) 31, 226
BsiHKAI GWGCWC 1 cut(s) 214
BslFI GGGAC 1 cut(s) 356
BsmAI GTCTC 2 cut(s) 452, 559
BsmBI CGTCTC 1 cut(s) 452
BsmFI GGGAC 1 cut(s) 356
BsmI GAATGC 1 cut(s) 622
Bsp119I TTCGAA 1 cut(s) 490
Bsp1286I GDGCHC 1 cut(s) 214
Bsp143I GATC 1 cut(s) 623
Bsp1720I GCTNAGC 1 cut(s) 126
Bsp19I CCATGG 1 cut(s) 381
BspACI CCGC 3 cut(s) 197, 202, 620
BspCNI CTCAG 2 cut(s) 139, 382
BspHI TCATGA 1 cut(s) 673
BspLI GGNNCC 1 cut(s) 243
BspOI GCTAGC 1 cut(s) 599
BspPI GGATC 1 cut(s) 631
BspQI GCTCTTC 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 490
BssECI CCNNGG 3 cut(s) 381, 496, 509
BssMI GATC 1 cut(s) 623
BssNI GRCGYC 1 cut(s) 369
BssT1I CCWWGG 2 cut(s) 381, 509
Bst2UI CCWGG 1 cut(s) 498
Bst4CI ACNGT 2 cut(s) 96, 216
Bst6I CTCTTC 1 cut(s) 171
BstACI GRCGYC 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 689
BstBI TTCGAA 1 cut(s) 490
BstC8I GCNNGC 2 cut(s) 228, 597
BstDEI CTNAG 2 cut(s) 126, 390
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 4 cut(s) 102, 243, 331, 391
BstH2I RGCGCY 2 cut(s) 88, 303
BstHHI GCGC 2 cut(s) 87, 302
BstKTI GATC 1 cut(s) 626
BstMAI GTCTC 2 cut(s) 452, 559
BstMBI GATC 1 cut(s) 623
BstMWI GCNNNNNNNGC 4 cut(s) 248, 356, 386, 617
BstNI CCWGG 1 cut(s) 498
BstSCI CCNGG 1 cut(s) 496
BstSLI GKGCMC 1 cut(s) 214
BstV1I GCAGC 4 cut(s) 24, 50, 109, 186
BstX2I RGATCY 1 cut(s) 623
BstYI RGATCY 1 cut(s) 623
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 4 cut(s) 102, 243, 331, 391
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 2 cut(s) 101, 214
Cac8I GCNNGC 2 cut(s) 228, 597
CciI TCATGA 1 cut(s) 673
CfoI GCGC 2 cut(s) 87, 302
Cfr13I GGNCC 1 cut(s) 279
Csp6I GTAC 3 cut(s) 395, 660, 690
CviAII CATG 4 cut(s) 30, 382, 551, 674
CviQI GTAC 3 cut(s) 395, 660, 690
DdeI CTNAG 2 cut(s) 126, 390
DpnI GATC 1 cut(s) 625
DpnII GATC 1 cut(s) 623
DraI TTTAAA 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco130I CCWWGG 2 cut(s) 381, 509
Eco47I GGWCC 1 cut(s) 279
Eco47III AGCGCT 1 cut(s) 301
Eco57I CTGAAG 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 496
EcoT14I CCWWGG 2 cut(s) 381, 509
ErhI CCWWGG 2 cut(s) 381, 509
Esp3I CGTCTC 1 cut(s) 452
FaeI CATG 4 cut(s) 33, 385, 554, 677
FaqI GGGAC 1 cut(s) 356
FatI CATG 4 cut(s) 29, 381, 550, 673
FauI CCCGC 1 cut(s) 613
Fnu4HI GCNGC 4 cut(s) 13, 64, 123, 200
FokI GGATG 4 cut(s) 89, 250, 338, 398
Fsp4HI GCNGC 4 cut(s) 13, 64, 123, 200
FspBI CTAG 5 cut(s) 107, 131, 375, 596, 693
GlaI GCGC 2 cut(s) 86, 301
GluI GCNGC 4 cut(s) 13, 64, 123, 200
HaeII RGCGCY 2 cut(s) 88, 303
HhaI GCGC 2 cut(s) 87, 302
Hin1I GRCGYC 1 cut(s) 369
Hin1II CATG 4 cut(s) 33, 385, 554, 677
Hin6I GCGC 2 cut(s) 85, 300
HinP1I GCGC 2 cut(s) 85, 300
HincII GTYRAC 2 cut(s) 367, 539
HindII GTYRAC 2 cut(s) 367, 539
HinfI GANTC 3 cut(s) 48, 442, 464
HphI GGTGA 1 cut(s) 186
Hpy166II GTNNAC 5 cut(s) 27, 212, 268, 367, 539
Hpy188I TCNGA 2 cut(s) 53, 114
Hpy188III TCNNGA 2 cut(s) 569, 674
Hpy8I GTNNAC 5 cut(s) 27, 212, 268, 367, 539
HpyAV CCTTC 5 cut(s) 26, 109, 566, 653, 657
HpyCH4III ACNGT 2 cut(s) 96, 216
HpyCH4IV ACGT 3 cut(s) 40, 369, 688
HpyCH4V TGCA 6 cut(s) 12, 207, 212, 251, 329, 587
HpyF10VI GCNNNNNNNGC 4 cut(s) 248, 356, 386, 617
HpyF3I CTNAG 2 cut(s) 126, 390
HpySE526I ACGT 3 cut(s) 40, 369, 688
Hsp92I GRCGYC 1 cut(s) 369
Hsp92II CATG 4 cut(s) 33, 385, 554, 677
HspAI GCGC 2 cut(s) 85, 300
Kzo9I GATC 1 cut(s) 623
LguI GCTCTTC 1 cut(s) 171
LmnI GCTCC 2 cut(s) 247, 608
Lsp1109I GCAGC 4 cut(s) 24, 50, 109, 186
LweI GCATC 3 cut(s) 260, 316, 376
MaeI CTAG 5 cut(s) 107, 131, 375, 596, 693
MaeII ACGT 3 cut(s) 40, 369, 688
MaeIII GTNAC 2 cut(s) 292, 477
MalI GATC 1 cut(s) 625
MboI GATC 1 cut(s) 623
MboII GAAGA 1 cut(s) 158
MflI RGATCY 1 cut(s) 623
MhlI GDGCHC 1 cut(s) 214
MluCI AATT 8 cut(s) 76, 151, 188, 337, 517, 601, 665, 682
MlyI GAGTC 2 cut(s) 436, 458
MmeI TCCRAC 1 cut(s) 419
MnlI CCTC 3 cut(s) 255, 385, 403
MseI TTAA 3 cut(s) 75, 138, 681
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 199
MspR9I CCNGG 1 cut(s) 498
Mva1269I GAATGC 1 cut(s) 622
MvaI CCWGG 1 cut(s) 498
MwoI GCNNNNNNNGC 4 cut(s) 248, 356, 386, 617
NcoI CCATGG 1 cut(s) 381
NdeII GATC 1 cut(s) 623
NheI GCTAGC 1 cut(s) 595
NlaIII CATG 4 cut(s) 33, 385, 554, 677
NlaIV GGNNCC 1 cut(s) 243
NspV TTCGAA 1 cut(s) 490
PagI TCATGA 1 cut(s) 673
PciSI GCTCTTC 1 cut(s) 171
PctI GAATGC 1 cut(s) 622
PfeI GAWTC 1 cut(s) 48
PkrI GCNGC 4 cut(s) 14, 65, 124, 201
PleI GAGTC 2 cut(s) 436, 458
PpsI GAGTC 2 cut(s) 436, 458
Ppu21I YACGTR 1 cut(s) 689
PpuMI RGGWCCY 1 cut(s) 279
PshBI ATTAAT 1 cut(s) 75
Psp5II RGGWCCY 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 496
PspGI CCWGG 1 cut(s) 496
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 1 cut(s) 279
PspPPI RGGWCCY 1 cut(s) 279
PsuI RGATCY 1 cut(s) 623
RsaI GTAC 3 cut(s) 396, 661, 691
RsaNI GTAC 3 cut(s) 395, 660, 690
RseI CAYNNNNRTG 1 cut(s) 419
SapI GCTCTTC 1 cut(s) 171
SaqAI TTAA 3 cut(s) 75, 138, 681
SatI GCNGC 4 cut(s) 13, 64, 123, 200
Sau3AI GATC 1 cut(s) 623
Sau96I GGNCC 1 cut(s) 279
ScaI AGTACT 1 cut(s) 661
SchI GAGTC 2 cut(s) 436, 458
ScrFI CCNGG 1 cut(s) 498
SduI GDGCHC 1 cut(s) 214
SfaNI GCATC 3 cut(s) 260, 316, 376
SfuI TTCGAA 1 cut(s) 490
SinI GGWCC 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
SpeI ACTAGT 1 cut(s) 692
Sse9I AATT 8 cut(s) 76, 151, 188, 337, 517, 601, 665, 682
SsiI CCGC 3 cut(s) 197, 202, 620
SspMI CTAG 5 cut(s) 107, 131, 375, 596, 693
StyD4I CCNGG 1 cut(s) 496
StyI CCWWGG 2 cut(s) 381, 509
TaaI ACNGT 2 cut(s) 96, 216
TaiI ACGT 3 cut(s) 43, 372, 691
TaqI TCGA 2 cut(s) 490, 568
TasI AATT 8 cut(s) 76, 151, 188, 337, 517, 601, 665, 682
TatI WGTACW 1 cut(s) 659
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 3 cut(s) 75, 138, 681
Tru9I TTAA 3 cut(s) 75, 138, 681
TscAI CASTG 2 cut(s) 101, 214
TseI GCWGC 4 cut(s) 12, 63, 122, 199
TspDTI ATGAA 3 cut(s) 91, 539, 643
TspGWI ACGGA 1 cut(s) 476
TspRI CASTG 2 cut(s) 101, 214
VneI GTGCAC 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 279
VspI ATTAAT 1 cut(s) 75
XspI CTAG 5 cut(s) 107, 131, 375, 596, 693
ZraI GACGTC 1 cut(s) 370
ZrmI AGTACT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.