Rorug01G0467400

Protein ENHANCED DISEASE RESISTANCE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001313
Physical Location & Seq
Forward (+)
56011787 .. 56015581
3795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0467400.1

Sequence Viewer

Length: 957 bp
ATGGGAACAATGGCTACGCCCATCCCTCGTGTAGCATCTAATTTTGATGAGGTGTCTATGCATCAGAGCTTGCTCTTCTCTGATAGTCTCAAGGATTTGAAGAATTTGAGATCACAATTATACTCAGCAGCAGAGTACTTTGAACTTTCTTATACAAATGATGACCAAAAACATATAGTGGTAGAAACATTGAAAGATTATGCCATTAAAGCTCTTGTGAATACAGTGGACCATTTGGGTTCTGTGACATATAAGGTCAATGACCTCTTGGATGAAAAAGTGGATGAAGTTTCTGGCACAGAATTTCGGGTTTCTTGCATTGAACAGAGGCTGAGGACATGTCAAGAATATATTGATCATGAGGGTCTTTCCCAACAGTCATCAGTGATAGATACTCCCAAATACCACAAGCGGTACATCTTGCCAGTGGGTGAGACCATGCGTGGAGCCAACAAAGCTAAATCTAAATACAAAGGATGCAACTTAGATGATGAAGATGAATGGCATCAATTTCGGAATGCTGTTCGTGCTACAATTAGAGAAACCCCACCAACTACAGTCAGGGGGCGGTCTCCTTCTCCACAACCTCAAAGACCTGCAGTATTTTCTTTTACATCTACCATGCCCAAGAAAGAATTAGATAAGCGAACAGTTTCACCTCATCGGTTTCCACTTTTACGGTCTGGATCTCTTGCTAGTAGGCCGACAACTCCAAGCAAAAGTCAGTCAACTACCCCAAACTCAAGTAGACCAACGACTCCAAATCTTTCCAATGCAAGACGGCGGTACCCTTCAGAGCCTCGGAAATCAGCTTCAATGCGGCTACCTGCTGAAAGAGATAATGGCAGAGAGGTTGAACAATACCCCAGCAAAAGTAAACGCCTCCTCAAAGCCTTGCTTAGCAGGCGCAAGTCAAAGAAAGATGATATGTTATACACTTACTTGGATGAATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336 START

Protein Analysis

318

Amino Acids

36.36

Weight (kDa)

9.47

Isoelectric Point (pI)

55.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 604, 835
Acc65I GGTACC 1 cut(s) 786
AccB1I GGYRCC 1 cut(s) 786
AccI GTMKAC 1 cut(s) 748
AciI CCGC 4 cut(s) 412, 568, 784, 820
AclWI GGATC 1 cut(s) 694
AcsI RAATTY 2 cut(s) 103, 302
AcuI CTGAAG 1 cut(s) 777
AfaI GTAC 3 cut(s) 137, 416, 788
AflIII ACRYGT 1 cut(s) 338
AgsI TTSAA 6 cut(s) 100, 143, 193, 323, 816, 857
AluBI AGCT 4 cut(s) 69, 212, 458, 812
AluI AGCT 4 cut(s) 69, 212, 458, 812
Alw26I GTCTC 3 cut(s) 92, 428, 576
AlwI GGATC 1 cut(s) 694
AlwNI CAGNNNCTG 1 cut(s) 331
AoxI GGCC 1 cut(s) 701
ApeKI GCWGC 1 cut(s) 128
ApoI RAATTY 2 cut(s) 103, 302
Asp700I GAANNNNTTC 1 cut(s) 652
Asp718I GGTACC 1 cut(s) 786
AspLEI GCGC 1 cut(s) 909
AspS9I GGNCC 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 443, 648
AvaII GGWCC 1 cut(s) 229
BaeI ACNNNNGTAYC 2 cut(s) 770, 803
BanI GGYRCC 1 cut(s) 786
BauI CACGAG 1 cut(s) 27
BbvCI CCTCAGC 1 cut(s) 332
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 29
BceAI ACGGC 1 cut(s) 797
BcgI CGANNNNNNTGC 2 cut(s) 494, 528
BclI TGATCA 1 cut(s) 355
BcoDI GTCTC 3 cut(s) 92, 428, 576
BfaI CTAG 1 cut(s) 696
BfmI CTRYAG 2 cut(s) 555, 597
BfuAI ACCTGC 2 cut(s) 604, 835
BisI GCNGC 2 cut(s) 129, 821
BlpI GCTNAGC 1 cut(s) 899
BlsI GCNGC 2 cut(s) 130, 822
BmcAI AGTACT 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 2 cut(s) 448, 788
BmsI GCATC 4 cut(s) 44, 70, 467, 514
Bpu10I CCTNAGC 1 cut(s) 332
Bpu1102I GCTNAGC 1 cut(s) 899
BpuEI CTTGAG 2 cut(s) 74, 727
BsaI GGTCTC 2 cut(s) 428, 576
BsaJI CCNNGG 1 cut(s) 800
Bse1I ACTGG 1 cut(s) 425
BseDI CCNNGG 1 cut(s) 800
BseGI GGATG 5 cut(s) 21, 277, 289, 482, 952
BseMII CTCAG 2 cut(s) 138, 323
BseNI ACTGG 1 cut(s) 425
BseRI GAGGAG 1 cut(s) 875
BseXI GCAGC 1 cut(s) 140
BseYI CCCAGC 1 cut(s) 866
BshFI GGCC 1 cut(s) 703
BshNI GGYRCC 1 cut(s) 786
BsmAI GTCTC 3 cut(s) 92, 428, 576
BsmI GAATGC 1 cut(s) 523
BsnI GGCC 1 cut(s) 703
Bso31I GGTCTC 2 cut(s) 428, 576
Bsp143I GATC 3 cut(s) 110, 355, 686
Bsp1720I GCTNAGC 1 cut(s) 899
BspACI CCGC 4 cut(s) 412, 568, 784, 820
BspANI GGCC 1 cut(s) 703
BspCNI CTCAG 2 cut(s) 137, 324
BspHI TCATGA 1 cut(s) 358
BspLI GGNNCC 2 cut(s) 448, 788
BspMAI CTGCAG 1 cut(s) 601
BspMI ACCTGC 2 cut(s) 604, 835
BspPI GGATC 1 cut(s) 694
BspQI GCTCTTC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 786
BspTNI GGTCTC 2 cut(s) 428, 576
BsrI ACTGG 1 cut(s) 425
BssECI CCNNGG 1 cut(s) 800
BssMI GATC 3 cut(s) 110, 355, 686
BssSI CACGAG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 27
Bst4CI ACNGT 5 cut(s) 226, 378, 559, 652, 681
Bst6I CTCTTC 1 cut(s) 80
BstC8I GCNNGC 2 cut(s) 71, 905
BstDEI CTNAG 4 cut(s) 124, 332, 484, 899
BstF5I GGATG 5 cut(s) 21, 277, 289, 482, 952
BstHHI GCGC 1 cut(s) 909
BstKTI GATC 3 cut(s) 113, 358, 689
BstMAI GTCTC 3 cut(s) 92, 428, 576
BstMBI GATC 3 cut(s) 110, 355, 686
BstMWI GCNNNNNNNGC 4 cut(s) 209, 455, 527, 904
BstNSI RCATGY 1 cut(s) 342
BstSFI CTRYAG 2 cut(s) 555, 597
BstV1I GCAGC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 686
BstYI RGATCY 1 cut(s) 686
BsuRI GGCC 1 cut(s) 703
BtsCI GGATG 5 cut(s) 21, 277, 289, 482, 952
BtsIMutI CAGTG 3 cut(s) 231, 390, 432
BveI ACCTGC 2 cut(s) 604, 835
Cac8I GCNNGC 2 cut(s) 71, 905
CaiI CAGNNNCTG 1 cut(s) 331
CciI TCATGA 1 cut(s) 358
CfoI GCGC 1 cut(s) 909
Cfr13I GGNCC 1 cut(s) 229
Csp6I GTAC 3 cut(s) 136, 415, 787
CviAII CATG 4 cut(s) 339, 359, 439, 622
CviQI GTAC 3 cut(s) 136, 415, 787
DdeI CTNAG 4 cut(s) 124, 332, 484, 899
DpnI GATC 3 cut(s) 112, 357, 688
DpnII GATC 3 cut(s) 110, 355, 686
Eam1104I CTCTTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 80
Eco31I GGTCTC 2 cut(s) 428, 576
Eco47I GGWCC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 777
EcoT22I ATGCAT 1 cut(s) 63
FaeI CATG 4 cut(s) 342, 362, 442, 625
FalI AAGNNNNNCTT 2 cut(s) 882, 914
FatI CATG 4 cut(s) 338, 358, 438, 621
FbaI TGATCA 1 cut(s) 355
FblI GTMKAC 1 cut(s) 748
Fnu4HI GCNGC 2 cut(s) 129, 821
FokI GGATG 4 cut(s) 8, 284, 296, 489
Fsp4HI GCNGC 2 cut(s) 129, 821
FspBI CTAG 1 cut(s) 696
GlaI GCGC 1 cut(s) 908
GluI GCNGC 2 cut(s) 129, 821
GsaI CCCAGC 1 cut(s) 870
HaeIII GGCC 1 cut(s) 703
HhaI GCGC 1 cut(s) 909
Hin1II CATG 4 cut(s) 342, 362, 442, 625
Hin6I GCGC 1 cut(s) 907
HinP1I GCGC 1 cut(s) 907
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HinfI GANTC 1 cut(s) 757
HphI GGTGA 2 cut(s) 443, 648
Hpy166II GTNNAC 4 cut(s) 229, 729, 749, 878
Hpy188I TCNGA 5 cut(s) 66, 82, 516, 796, 804
Hpy188III TCNNGA 3 cut(s) 344, 359, 684
Hpy8I GTNNAC 4 cut(s) 229, 729, 749, 878
HpyAV CCTTC 2 cut(s) 585, 801
HpyCH4III ACNGT 5 cut(s) 226, 378, 559, 652, 681
HpyCH4V TGCA 5 cut(s) 61, 318, 480, 599, 776
HpyF10VI GCNNNNNNNGC 4 cut(s) 209, 455, 527, 904
HpyF3I CTNAG 4 cut(s) 124, 332, 484, 899
Hsp92II CATG 4 cut(s) 342, 362, 442, 625
HspAI GCGC 1 cut(s) 907
KpnI GGTACC 1 cut(s) 790
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 3 cut(s) 110, 355, 686
LguI GCTCTTC 1 cut(s) 80
LmnI GCTCC 1 cut(s) 446
LpnPI CCDG 8 cut(s) 279, 438, 547, 609, 669, 840, 880, 889
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 4 cut(s) 44, 70, 467, 514
MaeI CTAG 1 cut(s) 696
MaeIII GTNAC 1 cut(s) 244
MalI GATC 3 cut(s) 112, 357, 688
MboI GATC 3 cut(s) 110, 355, 686
MboII GAAGA 3 cut(s) 67, 112, 506
MflI RGATCY 1 cut(s) 686
MluCI AATT 7 cut(s) 40, 103, 116, 302, 509, 534, 635
MlyI GAGTC 1 cut(s) 751
Mph1103I ATGCAT 1 cut(s) 63
MroXI GAANNNNTTC 1 cut(s) 652
MseI TTAA 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 523
MwoI GCNNNNNNNGC 4 cut(s) 209, 455, 527, 904
NdeII GATC 3 cut(s) 110, 355, 686
NlaIII CATG 4 cut(s) 342, 362, 442, 625
NlaIV GGNNCC 2 cut(s) 448, 788
NmuCI GTSAC 1 cut(s) 244
NsiI ATGCAT 1 cut(s) 63
NspI RCATGY 1 cut(s) 342
PagI TCATGA 1 cut(s) 358
PciI ACATGT 1 cut(s) 338
PciSI GCTCTTC 1 cut(s) 80
PctI GAATGC 1 cut(s) 523
PdmI GAANNNNTTC 1 cut(s) 652
PkrI GCNGC 2 cut(s) 130, 822
PleI GAGTC 1 cut(s) 751
PpsI GAGTC 1 cut(s) 751
PscI ACATGT 1 cut(s) 338
PspFI CCCAGC 1 cut(s) 866
PspN4I GGNNCC 2 cut(s) 448, 788
PspPI GGNCC 1 cut(s) 229
PsrI GAACNNNNNNTAC 1 cut(s) 30
PstI CTGCAG 1 cut(s) 601
PstNI CAGNNNCTG 1 cut(s) 331
PsuI RGATCY 1 cut(s) 686
RsaI GTAC 3 cut(s) 137, 416, 788
RsaNI GTAC 3 cut(s) 136, 415, 787
SapI GCTCTTC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 2 cut(s) 129, 821
Sau3AI GATC 3 cut(s) 110, 355, 686
Sau96I GGNCC 1 cut(s) 229
ScaI AGTACT 1 cut(s) 137
SchI GAGTC 1 cut(s) 751
SfaNI GCATC 4 cut(s) 44, 70, 467, 514
SfcI CTRYAG 2 cut(s) 555, 597
SinI GGWCC 1 cut(s) 229
SmlI CTYRAG 2 cut(s) 89, 742
SmoI CTYRAG 2 cut(s) 89, 742
Sse9I AATT 7 cut(s) 40, 103, 116, 302, 509, 534, 635
SsiI CCGC 4 cut(s) 412, 568, 784, 820
SspMI CTAG 1 cut(s) 696
TaaI ACNGT 5 cut(s) 226, 378, 559, 652, 681
TasI AATT 7 cut(s) 40, 103, 116, 302, 509, 534, 635
TatI WGTACW 1 cut(s) 135
TauI GCSGC 1 cut(s) 823
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 3 cut(s) 231, 390, 432
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 1 cut(s) 128
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 4 cut(s) 288, 300, 507, 513
TspRI CASTG 3 cut(s) 231, 390, 432
VpaK11BI GGWCC 1 cut(s) 229
XapI RAATTY 2 cut(s) 103, 302
XceI RCATGY 1 cut(s) 342
XmiI GTMKAC 1 cut(s) 748
XmnI GAANNNNTTC 1 cut(s) 652
XspI CTAG 1 cut(s) 696
ZrmI AGTACT 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.