Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001313

Physical Location & Seq

Genomic Coordinates Reverse (-)

22340388 .. 22341392

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g24190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGTTTGAGTATTTTGGGTGGGTGTATCATCTGGGTGTGAATACGGTAGGGCATGAGTATTGTCACCTTAGGTTTCTCTTCATTAGGGGAAAGTATGTCGAGATGTATAAGCGCGATCCTCATGAGAACCCCGGTATTAGACCCATTCGGAGGGGTGCTGTTGGGCCTACACTGATGGTGGAGGAGCTGGGGCGCAGAAAGGTTAATCATGGAGGTAAGGGTGGGGATATATATGTTCTACGGTTTTACAATCGTTTGGATGAAACCAAAAAGGGAGAAATTGCATGTGCTAGTGCGGGAGAAGCACAGAAATGGATGGAGGCATTTGATCAAGCCAAGCAACAGGCTGAGTATGAGCTTTCAAGAGGGGCTAGTGCCAGAAAGAAGCTGAACATGGAAGAGGAGATCGATCTTGAAGGTCATCGACCTAGAGTAAGGCACTATGCACATGGATTGAAAAGGCTTATAAAAATTGGGCAAGGCCCGGAGATGCTCTTGCGTCAATCCTCAAGCATGGGTGGAGATATTAACACAGAGGGGTACTTTCGAACAGATTTTGGAGATGCAGTTGAGGCTTATGTATGGAAATGTGTGCGAACAGTTAATGGTGTTCGAATATTTCAAGATGTTGCTAACACTGAGAGCGGAAAAGGCGTTATCGTCAAGTCTGTTGGCGTTATTGAAGCAAGTGCAGATACTGCTTTTGAAGTGATTTTAAACCTCGACCGACACCAGAGATATGAGTGGGATATGCTGACAGCTAACTTAGAGCTGATAGATTCTTATGATGGATACTTTGATGTTGTCTACGGGACTTTTGATCCTATGTATCTTTCTCGGTGGCGTTCCAAGAAAGATTTTCTCTTCTCTAGGCAATGGTTCCGTGGACAGGATGGAACATACACCATCTTGCAATTTCCAGCTGTCCATAAGAAAAAGCCTCAGAGGTCCGGGTATCATCGTACAAAAATAAATCCATCTAGTTGGGAGATTAGATCGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1336 START

Protein Analysis

335

Amino Acids

38.67

Weight (kDa)

9.1

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35180 AT5G35180 AT5G35180 AT5G35180 AT5G35180
fragaria_vesca	FvH4_1g01530 FvH4_1g01530 FvH4_1g01530 FvH4_1g01530 FvH4_1g01530 FvH4_7g03330 FvH4_7g03330 FvH4_7g03330 FvH4_7g03330
malus_domestica	MD02G1283900.v1.1 MD07G1049900.v1.1 MD15G1157900.v1.1
prunus_persica	Prupe.2G038700_v2.0.a1 Prupe.2G038700_v2.0.a1 Prupe.2G038700_v2.0.a1 Prupe.2G038700_v2.0.a1 Prupe.7G253100_v2.0.a1 Prupe.7G253100_v2.0.a1 Prupe.7G253100_v2.0.a1 Prupe.7G253100_v2.0.a1
pyrus_communis	pycom02g24190 pycom07g03570 pycom15g14170
rosa_chinensis	RchiOBHm_Chr1g0325641 RchiOBHm_Chr2g0086461
rosa_laevigata	RLG00000015760 RLG00000030114
rosa_multiflora	Rmu_sc0000651.1_g000003 Rmu_sc0005127.1_g000002 Rmu_sc0012559.1_g000004 Rmu_sc0021008.1_g000001 Rmu_sc0021009.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154560 Rroxscaffold_4G00324560
rosa_rugosa	Rorug01G0053300 Rorug01G0053400 Rorug01G0053500 Rorug01G0467400 Rorug01G0467400
rosa_samantha	Rh1AG069000 Rh1BG056400 Rh1CG069300 Rh1DG074000 Rh2AG018200 Rh2BG017800 Rh2CG018600 Rh2DG019500
rosa_wichuraiana	Rw1G005710 Rw2G001520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	467
AccBSI	CCGCTC	1 cut(s)	645
AccI	GTMKAC	1 cut(s)	807
AccII	CGCG	1 cut(s)	114
AciI	CCGC	2 cut(s)	296, 645
AclWI	GGATC	2 cut(s)	110, 815
AfaI	GTAC	2 cut(s)	542, 964
AfiI	CCNNNNNNNGG	2 cut(s)	150, 889
AgsI	TTSAA	6 cut(s)	363, 416, 457, 623, 683, 707
AluBI	AGCT	6 cut(s)	187, 358, 388, 761, 772, 923
AluI	AGCT	6 cut(s)	187, 358, 388, 761, 772, 923
AlwI	GGATC	2 cut(s)	110, 815
AlwNI	CAGNNNCTG	1 cut(s)	698
AoxI	GGCC	2 cut(s)	164, 481
AspLEI	GCGC	2 cut(s)	114, 195
AspS9I	GGNCC	3 cut(s)	164, 482, 948
AsuC2I	CCSGG	3 cut(s)	132, 485, 952
AsuHPI	GGTGA	1 cut(s)	56
AsuII	TTCGAA	2 cut(s)	547, 613
AvaII	GGWCC	1 cut(s)	948
AxyI	CCTNAGG	1 cut(s)	68
BccI	CCATC	6 cut(s)	169, 310, 782, 887, 914, 985
BciVI	GTATCC	1 cut(s)	785
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	3 cut(s)	132, 485, 952
BfaI	CTAG	5 cut(s)	291, 372, 429, 870, 981
BfuI	GTATCC	1 cut(s)	785
Bme1390I	CCNGG	3 cut(s)	132, 485, 952
Bme18I	GGWCC	1 cut(s)	948
BmgT120I	GGNCC	3 cut(s)	164, 482, 948
BmiI	GGNNCC	1 cut(s)	881
BmrFI	CCNGG	3 cut(s)	132, 485, 952
BmsI	GCATC	2 cut(s)	480, 553
Bpu14I	TTCGAA	2 cut(s)	547, 613
BpuEI	CTTGAG	1 cut(s)	493
BpuMI	CCSGG	3 cut(s)	132, 485, 952
Bsa29I	ATCGAT	2 cut(s)	408, 998
BsaJI	CCNNGG	2 cut(s)	130, 883
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 889
Bse21I	CCTNAGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	881
BseCI	ATCGAT	2 cut(s)	408, 998
BseDI	CCNNGG	2 cut(s)	130, 883
BseGI	GGATG	3 cut(s)	265, 321, 898
BseLI	CCNNNNNNNGG	2 cut(s)	150, 889
BseMI	GCAATG	1 cut(s)	881
BseMII	CTCAG	3 cut(s)	339, 630, 956
BseRI	GAGGAG	2 cut(s)	197, 416
BseYI	CCCAGC	1 cut(s)	187
BsgI	GTGCAG	1 cut(s)	711
Bsh1236I	CGCG	1 cut(s)	114
Bsh1285I	CGRYCG	1 cut(s)	727
BshFI	GGCC	2 cut(s)	166, 483
BshVI	ATCGAT	2 cut(s)	408, 998
BsiEI	CGRYCG	1 cut(s)	727
BsiSI	CCGG	3 cut(s)	132, 485, 951
BslFI	GGGAC	1 cut(s)	826
BslI	CCNNNNNNNGG	2 cut(s)	150, 889
BsmFI	GGGAC	1 cut(s)	826
BsnI	GGCC	2 cut(s)	166, 483
Bsp119I	TTCGAA	2 cut(s)	547, 613
Bsp143I	GATC	7 cut(s)	115, 328, 405, 409, 820, 995, 999
BspACI	CCGC	2 cut(s)	296, 645
BspANI	GGCC	2 cut(s)	166, 483
BspCNI	CTCAG	3 cut(s)	340, 631, 955
BspDI	ATCGAT	2 cut(s)	408, 998
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	881
BspPI	GGATC	2 cut(s)	110, 815
BspT104I	TTCGAA	2 cut(s)	547, 613
BsrBI	CCGCTC	1 cut(s)	645
BsrDI	GCAATG	1 cut(s)	881
BssECI	CCNNGG	2 cut(s)	130, 883
BssMI	GATC	7 cut(s)	115, 328, 405, 409, 820, 995, 999
Bst4CI	ACNGT	3 cut(s)	46, 243, 601
Bst6I	CTCTTC	3 cut(s)	83, 393, 869
BstAPI	GCANNNNNTGC	1 cut(s)	698
BstBI	TTCGAA	2 cut(s)	547, 613
BstDEI	CTNAG	5 cut(s)	68, 348, 639, 766, 942
BstDSI	CCRYGG	1 cut(s)	883
BstF5I	GGATG	3 cut(s)	265, 321, 898
BstFNI	CGCG	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	114, 195
BstKTI	GATC	7 cut(s)	118, 331, 408, 412, 823, 998, 1002
BstMBI	GATC	7 cut(s)	115, 328, 405, 409, 820, 995, 999
BstMCI	CGRYCG	1 cut(s)	727
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 572, 651, 698
BstNSI	RCATGY	1 cut(s)	288
BstSCI	CCNGG	3 cut(s)	130, 483, 950
BstUI	CGCG	1 cut(s)	114
BstXI	CCANNNNNNTGG	1 cut(s)	984
Bsu15I	ATCGAT	2 cut(s)	408, 998
Bsu36I	CCTNAGG	1 cut(s)	68
BsuI	GTATCC	1 cut(s)	785
BsuRI	GGCC	2 cut(s)	166, 483
BsuTUI	ATCGAT	2 cut(s)	408, 998
BtgI	CCRYGG	1 cut(s)	883
BtsCI	GGATG	3 cut(s)	265, 321, 898
BtsIMutI	CAGTG	2 cut(s)	170, 636
CaiI	CAGNNNCTG	1 cut(s)	698
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	2 cut(s)	114, 195
Cfr13I	GGNCC	3 cut(s)	164, 482, 948
ClaI	ATCGAT	2 cut(s)	408, 998
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	2 cut(s)	541, 963
CviAII	CATG	7 cut(s)	53, 122, 209, 285, 394, 449, 514
CviQI	GTAC	2 cut(s)	541, 963
DdeI	CTNAG	5 cut(s)	68, 348, 639, 766, 942
DpnI	GATC	7 cut(s)	117, 330, 407, 411, 822, 997, 1001
DpnII	GATC	7 cut(s)	115, 328, 405, 409, 820, 995, 999
DraI	TTTAAA	1 cut(s)	717
Eam1104I	CTCTTC	3 cut(s)	83, 393, 869
EarI	CTCTTC	3 cut(s)	83, 393, 869
Eco47I	GGWCC	1 cut(s)	948
Eco81I	CCTNAGG	1 cut(s)	68
FaeI	CATG	7 cut(s)	56, 125, 212, 288, 397, 452, 517
FaqI	GGGAC	1 cut(s)	826
FatI	CATG	7 cut(s)	52, 121, 208, 284, 393, 448, 513
FauI	CCCGC	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	328
FblI	GTMKAC	1 cut(s)	807
FokI	GGATG	3 cut(s)	272, 328, 905
FspBI	CTAG	5 cut(s)	291, 372, 429, 870, 981
GlaI	GCGC	2 cut(s)	113, 194
GsaI	CCCAGC	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	166, 483
HapII	CCGG	3 cut(s)	132, 485, 951
HgaI	GACGC	1 cut(s)	488
HhaI	GCGC	2 cut(s)	114, 195
Hin1II	CATG	7 cut(s)	56, 125, 212, 288, 397, 452, 517
Hin6I	GCGC	2 cut(s)	112, 193
HinP1I	GCGC	2 cut(s)	112, 193
HinfI	GANTC	1 cut(s)	779
HpaII	CCGG	3 cut(s)	132, 485, 951
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	2 cut(s)	808, 887
Hpy188I	TCNGA	3 cut(s)	150, 945, 1004
Hpy188III	TCNNGA	5 cut(s)	100, 122, 363, 413, 623
Hpy8I	GTNNAC	2 cut(s)	808, 887
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	3 cut(s)	46, 243, 601
HpyCH4V	TGCA	5 cut(s)	284, 446, 566, 692, 913
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 572, 651, 698
HpyF3I	CTNAG	5 cut(s)	68, 348, 639, 766, 942
Hsp92II	CATG	7 cut(s)	56, 125, 212, 288, 397, 452, 517
HspAI	GCGC	2 cut(s)	112, 193
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	7 cut(s)	115, 328, 405, 409, 820, 995, 999
LmnI	GCTCC	1 cut(s)	184
LweI	GCATC	2 cut(s)	480, 553
MaeI	CTAG	5 cut(s)	291, 372, 429, 870, 981
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	7 cut(s)	117, 330, 407, 411, 822, 997, 1001
MbiI	CCGCTC	1 cut(s)	645
MboI	GATC	7 cut(s)	115, 328, 405, 409, 820, 995, 999
MboII	GAAGA	3 cut(s)	70, 410, 856
MluCI	AATT	3 cut(s)	279, 471, 914
MseI	TTAA	4 cut(s)	204, 528, 603, 716
MslI	CAYNNNNRTG	2 cut(s)	33, 310
MspA1I	CMGCKG	1 cut(s)	923
MspI	CCGG	3 cut(s)	132, 485, 951
MspR9I	CCNGG	3 cut(s)	132, 485, 952
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	4 cut(s)	302, 572, 651, 698
NciI	CCSGG	3 cut(s)	132, 485, 952
NdeII	GATC	7 cut(s)	115, 328, 405, 409, 820, 995, 999
NlaIII	CATG	7 cut(s)	56, 125, 212, 288, 397, 452, 517
NlaIV	GGNNCC	1 cut(s)	881
NmuCI	GTSAC	1 cut(s)	62
NspI	RCATGY	1 cut(s)	288
NspV	TTCGAA	2 cut(s)	547, 613
PagI	TCATGA	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	779
PsiI	TTATAA	1 cut(s)	467
PspFI	CCCAGC	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	881
PspPI	GGNCC	3 cut(s)	164, 482, 948
PstNI	CAGNNNCTG	1 cut(s)	698
PvuII	CAGCTG	1 cut(s)	923
RsaI	GTAC	2 cut(s)	542, 964
RsaNI	GTAC	2 cut(s)	541, 963
RseI	CAYNNNNRTG	2 cut(s)	33, 310
SaqAI	TTAA	4 cut(s)	204, 528, 603, 716
Sau3AI	GATC	7 cut(s)	115, 328, 405, 409, 820, 995, 999
Sau96I	GGNCC	3 cut(s)	164, 482, 948
ScrFI	CCNGG	3 cut(s)	132, 485, 952
SfaNI	GCATC	2 cut(s)	480, 553
SfuI	TTCGAA	2 cut(s)	547, 613
SinI	GGWCC	1 cut(s)	948
SmiMI	CAYNNNNRTG	2 cut(s)	33, 310
SmlI	CTYRAG	1 cut(s)	508
SmoI	CTYRAG	1 cut(s)	508
Sse9I	AATT	3 cut(s)	279, 471, 914
SsiI	CCGC	2 cut(s)	296, 645
SspI	AATATT	1 cut(s)	618
SspMI	CTAG	5 cut(s)	291, 372, 429, 870, 981
StyD4I	CCNGG	3 cut(s)	130, 483, 950
TaaI	ACNGT	3 cut(s)	46, 243, 601
TaqI	TCGA	7 cut(s)	99, 408, 424, 547, 613, 723, 998
TaqII	GACCGA	1 cut(s)	741
TasI	AATT	3 cut(s)	279, 471, 914
TfiI	GAWTC	1 cut(s)	779
Tru1I	TTAA	4 cut(s)	204, 528, 603, 716
Tru9I	TTAA	4 cut(s)	204, 528, 603, 716
TscAI	CASTG	2 cut(s)	177, 643
TseFI	GTSAC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	70, 276
TspGWI	ACGGA	1 cut(s)	872
TspRI	CASTG	2 cut(s)	177, 643
VpaK11BI	GGWCC	1 cut(s)	948
XceI	RCATGY	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	807
XspI	CTAG	5 cut(s)	291, 372, 429, 870, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.