MD07G1180900.v1.1

Transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
26010865 .. 26014529
3665 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1180900.v1.1.491

Sequence Viewer

Length: 1401 bp
ATGTTGGATCTTAACATTAATTTCACCGACATAACTAATTCAAAATCTATGGAGGTAGATGATGCCGGGACATCCAACTCCTCCGTCGTCAATGCCGACGAAGCTCCGACTCCAGGCAATGCCGGAGACGAAGACTCCACCAACAATACCACTTCCTCTTTCATGTTTGATATCCTGAGGAGAGAGAAAGACGGTCTCTGCATTTCTGGGGACGGAGACCAGACTCAGTCTCTGCAGTTCGTGACGAGGCCGCTTTTTCCGGTGGCCGGATATGGCGGAGGAGGCAAGGAGGGGGCAGACTGCGGGTTGGGATTGTCGTCATCGTCCTTGTCAACGGCAAGGACTCACTGGCTGAACCTTTCGTTTGCCGAGTCTGGAGGGCAGACTCAGGCGGAGCTTAGAGTTGTGCAGCAGAAAAAACAGCCGCCCCGGAAAAGCCGTCGCGGGCCGAGATCCCGGAGCTCTCAGTACCGCGGCGTCACGTTTTACAGGAGGACAGGGCGGTGGGAGTCGCATATATGGGATTGTGGGAAACAGGTTTATTTAGGTGGATTTGACACTGCTCACTATGCAGCTAGAGCATACGATCGAGCTGCAATCAAATTTCGCGGAATTGATGCTGATATCAATTTTAATGTAGGAGATTATGAGGAAGATATGAAACTGTTGGGGCATCTGAATAAAGAAGAATTTGTGCACGTGCTTCGTCGCCAAACCACAGGAGCCTCACGTGGGAACTCGAAATACAGAGGTGTAGCTGCAGTTCCTCAGCCTGAATGTGGTGCCATTTGGGAAGATCGAATGGGACAAGTTCCTCGGAAAAAGGTCTTTGAAAAGGAGGCCATCAAATGCAGGACCGGAAGAGAAGCAGTTACAAACTTTGACCCTAGTATCTACGAAGGGGAGATGGTTTTAAATGCTAGCGTTGAAGGCAGTGGTCACAACCTTGATTTGAGCCTACGGATTTCTCAACCTTGTTCTGCTGGTCAAAAGAGGATTGGAAAATTAGGGGATTTTCAATTTCCTAAAGAGAGGCCAATGGTTAATGGGTTTTCTTCTGCAGCTATGGGACAACTCCCTCATGTTCTAACGACGGTAGCCAAGTGTCCTGCCCTATATCCAGGCTTCGTACAAAGACATGGGGAAATAACTTCAGATCATAACAGATTGCAACCAATTTCTTCGCCGAGATACACAAATTGGGCATGTCAAGTTTATGGAAACAACAACAATGTCAGCCCAATGCAAGTGTTTTCTATTGCAGCATCATCAGGATTCCCATCTTCTACAGCTACTACACCTCCTCCGTCTGCTTCCCTTCCTCCGAACCTCCAAGATAGCAGCGCTTCTGCCTACAGTCTCGATTGCCTTCCTTTCACGGCCACGGCCAACATTTACTAG

Protein Analysis

467

Amino Acids

50.83

Weight (kDa)

8.01

Isoelectric Point (pI)

47.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 156 - 204 2.5e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 782
AccII CGCG 3 cut(s) 444, 474, 609
AclWI GGATC 2 cut(s) 15, 447
AcoI YGGCCR 3 cut(s) 264, 1380, 1386
AcsI RAATTY 2 cut(s) 602, 689
AcuI CTGAAG 1 cut(s) 1137
AcvI CACGTG 2 cut(s) 700, 731
AcyI GRCGYC 1 cut(s) 477
AfaI GTAC 2 cut(s) 470, 1131
AfeI AGCGCT 1 cut(s) 1345
AfiI CCNNNNNNNGG 4 cut(s) 113, 266, 732, 779
AgsI TTSAA 4 cut(s) 42, 833, 929, 1019
AjnI CCWGG 2 cut(s) 112, 1120
AluBI AGCT 8 cut(s) 104, 397, 462, 575, 593, 758, 1064, 1292
AluI AGCT 8 cut(s) 104, 397, 462, 575, 593, 758, 1064, 1292
Alw21I GWGCWC 2 cut(s) 464, 699
Alw26I GTCTC 5 cut(s) 120, 200, 210, 234, 1364
Alw44I GTGCAC 1 cut(s) 695
AlwI GGATC 2 cut(s) 15, 447
AlwNI CAGNNNCTG 1 cut(s) 232
Aor51HI AGCGCT 1 cut(s) 1345
AoxI GGCC 7 cut(s) 248, 264, 446, 840, 1034, 1380, 1386
ApaLI GTGCAC 1 cut(s) 695
ApeKI GCWGC 7 cut(s) 409, 572, 593, 758, 1061, 1262, 1341
ApoI RAATTY 2 cut(s) 602, 689
AseI ATTAAT 1 cut(s) 18
AspLEI GCGC 1 cut(s) 1346
AspS9I GGNCC 2 cut(s) 446, 855
AsuC2I CCSGG 3 cut(s) 67, 430, 457
AsuHPI GGTGA 1 cut(s) 16
AsuNHI GCTAGC 1 cut(s) 920
AvaII GGWCC 1 cut(s) 855
AxyI CCTNAGG 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 699
BaeI ACNNNNGTAYC 2 cut(s) 874, 907
BanI GGYRCC 1 cut(s) 782
BanII GRGCYC 1 cut(s) 464
BbrPI CACGTG 2 cut(s) 700, 731
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 2 cut(s) 464, 699
BbvCI CCTCAGC 1 cut(s) 768
BbvI GCAGC 7 cut(s) 421, 580, 584, 745, 1073, 1274, 1353
BccI CCATC 3 cut(s) 851, 901, 1288
BceAI ACGGC 3 cut(s) 351, 423, 1395
BcgI CGANNNNNNTGC 4 cut(s) 575, 609, 686, 720
BciT130I CCWGG 2 cut(s) 114, 1122
BcnI CCSGG 3 cut(s) 67, 430, 457
BcoDI GTCTC 5 cut(s) 120, 200, 210, 234, 1364
BfaI CTAG 4 cut(s) 576, 888, 921, 1399
BfmI CTRYAG 5 cut(s) 233, 759, 1059, 1287, 1354
BfoI RGCGCY 1 cut(s) 1347
Bme1390I CCNGG 5 cut(s) 67, 114, 430, 457, 1122
Bme18I GGWCC 1 cut(s) 855
BmgT120I GGNCC 2 cut(s) 446, 855
BmiI GGNNCC 2 cut(s) 724, 784
BmrFI CCNGG 5 cut(s) 67, 114, 430, 457, 1122
BmsI GCATC 4 cut(s) 52, 607, 682, 1274
BmtI GCTAGC 1 cut(s) 924
BpiI GAAGAC 1 cut(s) 138
BpmI CTGGAG 2 cut(s) 96, 396
Bpu10I CCTNAGC 1 cut(s) 768
BpuMI CCSGG 3 cut(s) 67, 430, 457
BsaAI YACGTR 2 cut(s) 700, 731
BsaBI GATNNNNATC 1 cut(s) 1279
BsaHI GRCGYC 1 cut(s) 477
BsaI GGTCTC 2 cut(s) 200, 210
BsaJI CCNNGG 4 cut(s) 428, 472, 815, 1383
BsaWI WCCGGW 2 cut(s) 259, 857
BsaXI ACNNNNNCTCC 6 cut(s) 119, 149, 1285, 1288, 1315, 1318
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 266, 732, 779
Bse1I ACTGG 1 cut(s) 353
Bse21I CCTNAGG 1 cut(s) 176
Bse3DI GCAATG 1 cut(s) 124
Bse8I GATNNNNATC 1 cut(s) 1279
BseBI CCWGG 2 cut(s) 114, 1122
BseDI CCNNGG 4 cut(s) 428, 472, 815, 1383
BseGI GGATG 1 cut(s) 71
BseJI GATNNNNATC 1 cut(s) 1279
BseLI CCNNNNNNNGG 4 cut(s) 113, 266, 732, 779
BseMI GCAATG 1 cut(s) 124
BseMII CTCAG 5 cut(s) 167, 239, 401, 479, 782
BseNI ACTGG 1 cut(s) 353
BseRI GAGGAG 4 cut(s) 70, 193, 294, 1293
BseSI GKGCMC 1 cut(s) 699
BseXI GCAGC 7 cut(s) 421, 580, 584, 745, 1073, 1274, 1353
BsgI GTGCAG 1 cut(s) 428
Bsh1236I CGCG 3 cut(s) 444, 474, 609
Bsh1285I CGRYCG 1 cut(s) 589
BshFI GGCC 7 cut(s) 250, 266, 448, 842, 1036, 1382, 1388
BshNI GGYRCC 1 cut(s) 782
BsiEI CGRYCG 1 cut(s) 589
BsiHKAI GWGCWC 2 cut(s) 464, 699
BsiSI CCGG 7 cut(s) 66, 123, 260, 267, 430, 457, 858
BslFI GGGAC 4 cut(s) 82, 224, 819, 1083
BslI CCNNNNNNNGG 4 cut(s) 113, 266, 732, 779
BsmAI GTCTC 5 cut(s) 120, 200, 210, 234, 1364
BsmBI CGTCTC 1 cut(s) 120
BsmFI GGGAC 4 cut(s) 82, 224, 819, 1083
BsnI GGCC 7 cut(s) 250, 266, 448, 842, 1036, 1382, 1388
Bso31I GGTCTC 2 cut(s) 200, 210
Bsp1286I GDGCHC 2 cut(s) 464, 699
Bsp143I GATC 5 cut(s) 7, 452, 586, 796, 1156
BspANI GGCC 7 cut(s) 250, 266, 448, 842, 1036, 1382, 1388
BspCNI CTCAG 5 cut(s) 168, 238, 400, 478, 781
BspFNI CGCG 3 cut(s) 444, 474, 609
BspLI GGNNCC 2 cut(s) 724, 784
BspMAI CTGCAG 3 cut(s) 237, 763, 1063
BspOI GCTAGC 1 cut(s) 924
BspPI GGATC 2 cut(s) 15, 447
BspT107I GGYRCC 1 cut(s) 782
BspTNI GGTCTC 2 cut(s) 200, 210
BsrDI GCAATG 1 cut(s) 124
BsrI ACTGG 1 cut(s) 353
BssECI CCNNGG 4 cut(s) 428, 472, 815, 1383
BssMI GATC 5 cut(s) 7, 452, 586, 796, 1156
BssNI GRCGYC 1 cut(s) 477
Bst2UI CCWGG 2 cut(s) 114, 1122
Bst4CI ACNGT 4 cut(s) 194, 666, 1096, 1358
Bst6I CTCTTC 1 cut(s) 856
BstACI GRCGYC 1 cut(s) 477
BstBAI YACGTR 2 cut(s) 700, 731
BstC8I GCNNGC 2 cut(s) 446, 922
BstDEI CTNAG 6 cut(s) 176, 225, 387, 398, 465, 768
BstDSI CCRYGG 2 cut(s) 472, 1383
BstF5I GGATG 1 cut(s) 71
BstFNI CGCG 3 cut(s) 444, 474, 609
BstH2I RGCGCY 1 cut(s) 1347
BstHHI GCGC 1 cut(s) 1346
BstKTI GATC 5 cut(s) 10, 455, 589, 799, 1159
BstMAI GTCTC 5 cut(s) 120, 200, 210, 234, 1364
BstMBI GATC 5 cut(s) 7, 452, 586, 796, 1156
BstMCI CGRYCG 1 cut(s) 589
BstMWI GCNNNNNNNGC 5 cut(s) 101, 282, 569, 578, 930
BstNI CCWGG 2 cut(s) 114, 1122
BstNSI RCATGY 1 cut(s) 1209
BstSCI CCNGG 5 cut(s) 65, 112, 428, 455, 1120
BstSFI CTRYAG 5 cut(s) 233, 759, 1059, 1287, 1354
BstSLI GKGCMC 1 cut(s) 699
BstUI CGCG 3 cut(s) 444, 474, 609
BstV1I GCAGC 7 cut(s) 421, 580, 584, 745, 1073, 1274, 1353
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 2 cut(s) 7, 452
BstYI RGATCY 2 cut(s) 7, 452
Bsu36I CCTNAGG 1 cut(s) 176
BsuRI GGCC 7 cut(s) 250, 266, 448, 842, 1036, 1382, 1388
BtgI CCRYGG 2 cut(s) 472, 1383
BtsCI GGATG 1 cut(s) 71
BtsI GCAGTG 2 cut(s) 558, 940
BtsIMutI CAGTG 3 cut(s) 346, 558, 940
Cac8I GCNNGC 2 cut(s) 446, 922
CaiI CAGNNNCTG 1 cut(s) 232
CfoI GCGC 1 cut(s) 1346
Cfr13I GGNCC 2 cut(s) 446, 855
Cfr42I CCGCGG 1 cut(s) 475
CseI GACGC 1 cut(s) 466
Csp6I GTAC 2 cut(s) 469, 1130
CviAII CATG 4 cut(s) 163, 1082, 1139, 1206
CviQI GTAC 2 cut(s) 469, 1130
DdeI CTNAG 6 cut(s) 176, 225, 387, 398, 465, 768
DpnI GATC 5 cut(s) 9, 454, 588, 798, 1158
DpnII GATC 5 cut(s) 7, 452, 586, 796, 1156
DraI TTTAAA 1 cut(s) 915
EaeI YGGCCR 3 cut(s) 264, 1380, 1386
Eam1104I CTCTTC 1 cut(s) 856
EarI CTCTTC 1 cut(s) 856
EciI GGCGGA 2 cut(s) 291, 407
Ecl136II GAGCTC 1 cut(s) 462
Eco24I GRGCYC 1 cut(s) 464
Eco31I GGTCTC 2 cut(s) 200, 210
Eco32I GATATC 2 cut(s) 172, 625
Eco47I GGWCC 1 cut(s) 855
Eco47III AGCGCT 1 cut(s) 1345
Eco53kI GAGCTC 1 cut(s) 462
Eco57I CTGAAG 1 cut(s) 1137
Eco72I CACGTG 2 cut(s) 700, 731
Eco81I CCTNAGG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 462
EcoRII CCWGG 2 cut(s) 112, 1120
EcoRV GATATC 2 cut(s) 172, 625
EcoT38I GRGCYC 1 cut(s) 464
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 4 cut(s) 166, 1085, 1142, 1209
FaqI GGGAC 4 cut(s) 82, 224, 819, 1083
FatI CATG 4 cut(s) 162, 1081, 1138, 1205
FauI CCCGC 2 cut(s) 296, 437
FokI GGATG 1 cut(s) 58
FriOI GRGCYC 1 cut(s) 464
FspBI CTAG 4 cut(s) 576, 888, 921, 1399
GlaI GCGC 1 cut(s) 1345
GsuI CTGGAG 2 cut(s) 96, 396
HaeII RGCGCY 1 cut(s) 1347
HaeIII GGCC 7 cut(s) 250, 266, 448, 842, 1036, 1382, 1388
HapII CCGG 7 cut(s) 66, 123, 260, 267, 430, 457, 858
HgaI GACGC 1 cut(s) 466
HhaI GCGC 1 cut(s) 1346
Hin1I GRCGYC 1 cut(s) 477
Hin1II CATG 4 cut(s) 166, 1085, 1142, 1209
Hin6I GCGC 1 cut(s) 1344
HinP1I GCGC 1 cut(s) 1344
HincII GTYRAC 1 cut(s) 333
HindII GTYRAC 1 cut(s) 333
HinfI GANTC 8 cut(s) 109, 134, 223, 343, 371, 385, 509, 1275
HpaII CCGG 7 cut(s) 66, 123, 260, 267, 430, 457, 858
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 333, 697
Hpy188I TCNGA 5 cut(s) 108, 678, 819, 1156, 1326
Hpy188III TCNNGA 5 cut(s) 175, 241, 375, 1272, 1361
Hpy8I GTNNAC 2 cut(s) 333, 697
Hpy99I CGWCG 5 cut(s) 89, 101, 444, 711, 1096
HpyAV CCTTC 4 cut(s) 893, 923, 1328, 1379
HpyCH4III ACNGT 4 cut(s) 194, 666, 1096, 1358
HpyCH4IV ACGT 3 cut(s) 482, 699, 730
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 282, 569, 578, 930
HpyF3I CTNAG 6 cut(s) 176, 225, 387, 398, 465, 768
HpySE526I ACGT 3 cut(s) 482, 699, 730
Hsp92I GRCGYC 1 cut(s) 477
Hsp92II CATG 4 cut(s) 166, 1085, 1142, 1209
HspAI GCGC 1 cut(s) 1344
KspI CCGCGG 1 cut(s) 475
Kzo9I GATC 5 cut(s) 7, 452, 586, 796, 1156
LmnI GCTCC 4 cut(s) 109, 394, 459, 722
Lsp1109I GCAGC 7 cut(s) 421, 580, 584, 745, 1073, 1274, 1353
LweI GCATC 4 cut(s) 52, 607, 682, 1274
MaeI CTAG 4 cut(s) 576, 888, 921, 1399
MaeII ACGT 3 cut(s) 482, 699, 730
MaeIII GTNAC 4 cut(s) 241, 478, 871, 938
MalI GATC 5 cut(s) 9, 454, 588, 798, 1158
MboI GATC 5 cut(s) 7, 452, 586, 796, 1156
MboII GAAGA 8 cut(s) 143, 665, 698, 806, 873, 1047, 1173, 1275
MflI RGATCY 2 cut(s) 7, 452
MhlI GDGCHC 2 cut(s) 464, 699
MlyI GAGTC 7 cut(s) 103, 128, 217, 337, 379, 380, 518
MmeI TCCRAC 2 cut(s) 99, 131
MseI TTAA 5 cut(s) 12, 18, 633, 914, 1044
MspA1I CMGCKG 1 cut(s) 474
MspI CCGG 7 cut(s) 66, 123, 260, 267, 430, 457, 858
MspR9I CCNGG 5 cut(s) 67, 114, 430, 457, 1122
MvaI CCWGG 2 cut(s) 114, 1122
MvnI CGCG 3 cut(s) 444, 474, 609
MwoI GCNNNNNNNGC 5 cut(s) 101, 282, 569, 578, 930
NciI CCSGG 3 cut(s) 67, 430, 457
NdeII GATC 5 cut(s) 7, 452, 586, 796, 1156
NheI GCTAGC 1 cut(s) 920
NlaIII CATG 4 cut(s) 166, 1085, 1142, 1209
NlaIV GGNNCC 2 cut(s) 724, 784
NmeAIII GCCGAG 3 cut(s) 394, 474, 1212
NmuCI GTSAC 3 cut(s) 241, 478, 938
NspI RCATGY 1 cut(s) 1209
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PfeI GAWTC 1 cut(s) 1275
PflFI GACNNNGTC 1 cut(s) 226
PfoI TCCNGGA 1 cut(s) 455
Ple19I CGATCG 1 cut(s) 589
PleI GAGTC 7 cut(s) 103, 128, 217, 337, 379, 379, 517
PmaCI CACGTG 2 cut(s) 700, 731
PmlI CACGTG 2 cut(s) 700, 731
PpsI GAGTC 7 cut(s) 103, 128, 217, 337, 379, 379, 517
Ppu21I YACGTR 2 cut(s) 700, 731
PshBI ATTAAT 1 cut(s) 18
Psp124BI GAGCTC 1 cut(s) 464
Psp6I CCWGG 2 cut(s) 112, 1120
PspCI CACGTG 2 cut(s) 700, 731
PspGI CCWGG 2 cut(s) 112, 1120
PspN4I GGNNCC 2 cut(s) 724, 784
PspPI GGNCC 2 cut(s) 446, 855
PsrI GAACNNNNNNTAC 4 cut(s) 728, 747, 760, 779
PstI CTGCAG 3 cut(s) 237, 763, 1063
PstNI CAGNNNCTG 1 cut(s) 232
PsuI RGATCY 2 cut(s) 7, 452
PsyI GACNNNGTC 1 cut(s) 226
PvuI CGATCG 1 cut(s) 589
RsaI GTAC 2 cut(s) 470, 1131
RsaNI GTAC 2 cut(s) 469, 1130
SacI GAGCTC 1 cut(s) 464
SacII CCGCGG 1 cut(s) 475
SaqAI TTAA 5 cut(s) 12, 18, 633, 914, 1044
Sau3AI GATC 5 cut(s) 7, 452, 586, 796, 1156
Sau96I GGNCC 2 cut(s) 446, 855
SchI GAGTC 7 cut(s) 103, 128, 217, 337, 379, 380, 518
ScrFI CCNGG 5 cut(s) 67, 114, 430, 457, 1122
SduI GDGCHC 2 cut(s) 464, 699
SfaNI GCATC 4 cut(s) 52, 607, 682, 1274
SfcI CTRYAG 5 cut(s) 233, 759, 1059, 1287, 1354
Sfr303I CCGCGG 1 cut(s) 475
SgrBI CCGCGG 1 cut(s) 475
SinI GGWCC 1 cut(s) 855
SspMI CTAG 4 cut(s) 576, 888, 921, 1399
SstI GAGCTC 1 cut(s) 464
StyD4I CCNGG 5 cut(s) 65, 112, 428, 455, 1120
TaaI ACNGT 4 cut(s) 194, 666, 1096, 1358
TaiI ACGT 3 cut(s) 485, 702, 733
TaqI TCGA 4 cut(s) 589, 740, 799, 1362
TauI GCSGC 3 cut(s) 253, 427, 477
TfiI GAWTC 1 cut(s) 1275
Tru1I TTAA 5 cut(s) 12, 18, 633, 914, 1044
Tru9I TTAA 5 cut(s) 12, 18, 633, 914, 1044
TscAI CASTG 3 cut(s) 353, 565, 940
TseFI GTSAC 3 cut(s) 241, 478, 938
TseI GCWGC 7 cut(s) 409, 572, 593, 758, 1061, 1262, 1341
Tsp45I GTSAC 3 cut(s) 241, 478, 938
TspDTI ATGAA 2 cut(s) 151, 674
TspGWI ACGGA 4 cut(s) 73, 228, 976, 1296
TspRI CASTG 3 cut(s) 353, 565, 940
Tth111I GACNNNGTC 1 cut(s) 226
VneI GTGCAC 1 cut(s) 695
VpaK11BI GGWCC 1 cut(s) 855
VspI ATTAAT 1 cut(s) 18
XapI RAATTY 2 cut(s) 602, 689
XceI RCATGY 1 cut(s) 1209
XspI CTAG 4 cut(s) 576, 888, 921, 1399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.