Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006951

Physical Location & Seq

Genomic Coordinates Reverse (-)

55706925 .. 55710342

Gene Structure 3418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG323300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTTGGATCTTAATGTTGATGTCATTAGCTCTACCGTTGATCAATCCAGTTACGATGATAAGGCCAGAGCTTTGGAGGCCGAGAAGCTCCGAGAAGACTCCGGTTCCTCAGACTCCTCTGTGGTCAATGCAGAGGAAGACTCTTACTCCAACAACACCTCCCCATTCATCTTTGATATTTTGAAGAAAGACAAACACGGTCTTTGCAACAACAAAGAGGACCAGATTGTCCCCTCGCCTGAATTGGCTACAAGGCCGCTTTTTCCGGTTACCGGAGACGGCGGAGGAGGAGGAGAGCTGGGACTGTTGGCCTCGTCAAATTCGACATCGAGGCCTCAGTGGCTGAACTTGTCGTTTGCTGAGTCCGGCGGGCAAGCTGAGCTGAAAGTTGTGCAGCAGAAACAGCAGCAGGCCCGGAAAAGCCGCCGGGGGCCGAGATCTCGGAGCTCTCAGTACCGGGGAGTTACGTTTTACCGGAGGACCGGCCGGTGGGAATCGCATATATGGGATTGTGGGAAGCAAGTTTATTTAGGTGGATTTGACACTGCTCATTCTGCAGCCAAGGCGTATGATCGAGCTGCAATCAAGTTTCGAGGAGTTGATGCTGATATCAATTTCGTGCTAAGCGATTATGAGGAAGATTTGAAACAGATGAGGCATCTGAACAAAGAAGAATTCGTGCATGTGCTTCGTCGCCAAAGCAATGGAGCCTCTCGTGGGAACTCAAAATTGAGAGGCGTGGCGGCAGCGGCTGCAGCAGCCGCTGCTGTGCCTAAAATTGGTCCATTCGAAGTTCGAATGGGACAATTAATTCCTGGGAATAAGTTGATCAAATGTAATGGAAGGGAAGGAGTTACCAACTTTGATCCTAGTATTTATGAAGGGGCGGTAGTAGTAGATACCAGTACTGAAGGCAGTGGTCACAATCTTGATCTGAGCCTTGGGATTTCTCAGCCTTCTACTGGCCAAAAGAGGAAAGCCTTTGAAATACATACCAAAGAGAAGCCAATGGTAAATCTTAATCTCCCAATTTTACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010073 GO:0010093 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

346

Amino Acids

37.83

Weight (kDa)

8.3

Isoelectric Point (pI)

50.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	151 - 199	7.9e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006951)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20380 FvH4_7g20380 FvH4_7g20380 FvH4_7g20380 FvH4_7g20380 FvH4_7g20380 FvH4_7g20380
malus_domestica	MD01G1113400.v1.1 MD07G1180900.v1.1
prunus_persica	Prupe.2G220100_v2.0.a1
pyrus_communis	pycom01g14170
rosa_chinensis	RchiOBHm_Chr1g0364341
rosa_laevigata	RLG00000027494
rosa_multiflora	Rmu_sc0007470.1_g000004
rosa_roxburghii	Rroxscaffold_4G00292420
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug01G0315400 Rorug01G0315400 Rorug01G0315500 Rorug01G0315500
rosa_samantha	Rh1AG323300 Rh1BG285800 Rh1CG302500 Rh1DG317300
rosa_wichuraiana	Rw1G028640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AciI	CCGC	8 cut(s)	257, 282, 369, 424, 743, 749, 762, 887
AclWI	GGATC	2 cut(s)	15, 860
AcoI	YGGCCR	2 cut(s)	484, 964
AcsI	RAATTY	2 cut(s)	319, 674
AcuI	CTGAAG	1 cut(s)	930
AfaI	GTAC	2 cut(s)	455, 907
AfiI	CCNNNNNNNGG	5 cut(s)	272, 489, 717, 779, 962
AgsI	TTSAA	3 cut(s)	184, 646, 986
AjnI	CCWGG	1 cut(s)	814
AluBI	AGCT	8 cut(s)	30, 71, 88, 298, 377, 382, 447, 578
AluI	AGCT	8 cut(s)	30, 71, 88, 298, 377, 382, 447, 578
Alw21I	GWGCWC	1 cut(s)	449
Alw26I	GTCTC	1 cut(s)	270
AlwI	GGATC	2 cut(s)	15, 860
AlwNI	CAGNNNCTG	3 cut(s)	343, 752, 764
AoxI	GGCC	9 cut(s)	63, 78, 254, 309, 332, 411, 431, 484, 964
ApeKI	GCWGC	9 cut(s)	394, 406, 557, 578, 746, 752, 755, 758, 764
ApoI	RAATTY	2 cut(s)	319, 674
AseI	ATTAAT	1 cut(s)	809
AspS9I	GGNCC	5 cut(s)	220, 412, 431, 480, 782
AsuC2I	CCSGG	3 cut(s)	415, 428, 458
AsuII	TTCGAA	2 cut(s)	789, 796
AvaII	GGWCC	3 cut(s)	220, 480, 782
BalI	TGGCCA	1 cut(s)	966
BanII	GRGCYC	1 cut(s)	449
BauI	CACGAG	1 cut(s)	714
BbsI	GAAGAC	2 cut(s)	102, 144
Bbv12I	GWGCWC	1 cut(s)	449
BbvI	GCAGC	9 cut(s)	406, 418, 565, 569, 739, 751, 758, 767, 770
BceAI	ACGGC	1 cut(s)	295
BcgI	CGANNNNNNTGC	2 cut(s)	671, 705
BciT130I	CCWGG	1 cut(s)	816
BclI	TGATCA	2 cut(s)	40, 828
BcnI	CCSGG	3 cut(s)	415, 428, 458
BcoDI	GTCTC	1 cut(s)	270
BfaI	CTAG	1 cut(s)	870
BfmI	CTRYAG	2 cut(s)	555, 753
BglI	GCCNNNNNGGC	1 cut(s)	340
BglII	AGATCT	1 cut(s)	437
BlpI	GCTNAGC	2 cut(s)	378, 623
BmcAI	AGTACT	1 cut(s)	907
Bme1390I	CCNGG	4 cut(s)	415, 428, 458, 816
Bme18I	GGWCC	3 cut(s)	220, 480, 782
BmgT120I	GGNCC	5 cut(s)	220, 412, 431, 480, 782
BmiI	GGNNCC	3 cut(s)	106, 432, 709
BmrFI	CCNGG	4 cut(s)	415, 428, 458, 816
BmsI	GCATC	2 cut(s)	592, 667
BpiI	GAAGAC	2 cut(s)	102, 144
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
Bpu1102I	GCTNAGC	2 cut(s)	378, 623
Bpu14I	TTCGAA	2 cut(s)	789, 796
BpuMI	CCSGG	3 cut(s)	415, 428, 458
BsaJI	CCNNGG	5 cut(s)	427, 457, 561, 815, 940
BsaWI	WCCGGW	4 cut(s)	101, 265, 272, 474
BsaXI	ACNNNNNCTCC	4 cut(s)	131, 143, 161, 173
Bsc4I	CCNNNNNNNGG	5 cut(s)	272, 489, 717, 779, 962
Bse118I	RCCGGY	2 cut(s)	482, 486
Bse1I	ACTGG	3 cut(s)	48, 903, 967
Bse3DI	GCAATG	1 cut(s)	709
BseBI	CCWGG	1 cut(s)	816
BseDI	CCNNGG	5 cut(s)	427, 457, 561, 815, 940
BseLI	CCNNNNNNNGG	5 cut(s)	272, 489, 717, 779, 962
BseMI	GCAATG	1 cut(s)	709
BseMII	CTCAG	7 cut(s)	123, 350, 351, 369, 464, 926, 965
BseNI	ACTGG	3 cut(s)	48, 903, 967
BseRI	GAGGAG	5 cut(s)	106, 300, 303, 306, 609
BseX3I	CGGCCG	1 cut(s)	484
BseXI	GCAGC	9 cut(s)	406, 418, 565, 569, 739, 751, 758, 767, 770
BseYI	CCCAGC	1 cut(s)	298
BsgI	GTGCAG	1 cut(s)	413
Bsh1285I	CGRYCG	1 cut(s)	487
BshFI	GGCC	9 cut(s)	65, 80, 256, 311, 334, 413, 433, 486, 966
BsiEI	CGRYCG	1 cut(s)	487
BsiHKAI	GWGCWC	1 cut(s)	449
BslFI	GGGAC	3 cut(s)	215, 315, 816
BslI	CCNNNNNNNGG	5 cut(s)	272, 489, 717, 779, 962
BsmAI	GTCTC	1 cut(s)	270
BsmBI	CGTCTC	1 cut(s)	270
BsmFI	GGGAC	3 cut(s)	215, 315, 816
BsnI	GGCC	9 cut(s)	65, 80, 256, 311, 334, 413, 433, 486, 966
Bsp119I	TTCGAA	2 cut(s)	789, 796
Bsp1286I	GDGCHC	1 cut(s)	449
Bsp143I	GATC	7 cut(s)	7, 40, 437, 571, 828, 865, 931
Bsp1720I	GCTNAGC	2 cut(s)	378, 623
BspACI	CCGC	8 cut(s)	257, 282, 369, 424, 743, 749, 762, 887
BspANI	GGCC	9 cut(s)	65, 80, 256, 311, 334, 413, 433, 486, 966
BspCNI	CTCAG	7 cut(s)	122, 349, 352, 370, 463, 927, 964
BspLI	GGNNCC	3 cut(s)	106, 432, 709
BspMAI	CTGCAG	2 cut(s)	559, 757
BspPI	GGATC	2 cut(s)	15, 860
BspT104I	TTCGAA	2 cut(s)	789, 796
BsrDI	GCAATG	1 cut(s)	709
BsrFI	RCCGGY	2 cut(s)	482, 486
BsrI	ACTGG	3 cut(s)	48, 903, 967
BssAI	RCCGGY	2 cut(s)	482, 486
BssECI	CCNNGG	5 cut(s)	427, 457, 561, 815, 940
BssMI	GATC	7 cut(s)	7, 40, 437, 571, 828, 865, 931
BssSI	CACGAG	1 cut(s)	714
BssT1I	CCWWGG	2 cut(s)	561, 940
Bst2BI	CACGAG	1 cut(s)	714
Bst2UI	CCWGG	1 cut(s)	816
Bst4CI	ACNGT	3 cut(s)	37, 200, 306
BstAPI	GCANNNNNTGC	2 cut(s)	752, 764
BstBI	TTCGAA	2 cut(s)	789, 796
BstC8I	GCNNGC	3 cut(s)	371, 375, 411
BstDEI	CTNAG	8 cut(s)	109, 336, 360, 378, 450, 623, 935, 951
BstEII	GGTNACC	1 cut(s)	268
BstKTI	GATC	7 cut(s)	10, 43, 440, 574, 831, 868, 934
BstMAI	GTCTC	1 cut(s)	270
BstMBI	GATC	7 cut(s)	7, 40, 437, 571, 828, 865, 931
BstMCI	CGRYCG	1 cut(s)	487
BstNI	CCWGG	1 cut(s)	816
BstNSI	RCATGY	1 cut(s)	686
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	4 cut(s)	413, 426, 456, 814
BstSFI	CTRYAG	2 cut(s)	555, 753
BstV1I	GCAGC	9 cut(s)	406, 418, 565, 569, 739, 751, 758, 767, 770
BstV2I	GAAGAC	2 cut(s)	102, 144
BstX2I	RGATCY	2 cut(s)	7, 437
BstXI	CCANNNNNNTGG	2 cut(s)	73, 704
BstYI	RGATCY	2 cut(s)	7, 437
BstZI	CGGCCG	1 cut(s)	484
BsuRI	GGCC	9 cut(s)	65, 80, 256, 311, 334, 413, 433, 486, 966
BtsI	GCAGTG	2 cut(s)	543, 922
BtsIMutI	CAGTG	3 cut(s)	344, 543, 922
Cac8I	GCNNGC	3 cut(s)	371, 375, 411
CaiI	CAGNNNCTG	3 cut(s)	343, 752, 764
Cfr10I	RCCGGY	2 cut(s)	482, 486
Cfr13I	GGNCC	5 cut(s)	220, 412, 431, 480, 782
Csp6I	GTAC	2 cut(s)	454, 906
CviAII	CATG	1 cut(s)	683
CviQI	GTAC	2 cut(s)	454, 906
DdeI	CTNAG	8 cut(s)	109, 336, 360, 378, 450, 623, 935, 951
DpnI	GATC	7 cut(s)	9, 42, 439, 573, 830, 867, 933
DpnII	GATC	7 cut(s)	7, 40, 437, 571, 828, 865, 931
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	2 cut(s)	484, 964
EagI	CGGCCG	1 cut(s)	484
EciI	GGCGGA	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	447
EclXI	CGGCCG	1 cut(s)	484
Eco130I	CCWWGG	2 cut(s)	561, 940
Eco147I	AGGCCT	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	449
Eco32I	GATATC	1 cut(s)	610
Eco47I	GGWCC	3 cut(s)	220, 480, 782
Eco52I	CGGCCG	1 cut(s)	484
Eco53kI	GAGCTC	1 cut(s)	447
Eco57I	CTGAAG	1 cut(s)	930
Eco91I	GGTNACC	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	447
EcoO65I	GGTNACC	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	674
EcoRII	CCWGG	1 cut(s)	814
EcoRV	GATATC	1 cut(s)	610
EcoT14I	CCWWGG	2 cut(s)	561, 940
EcoT38I	GRGCYC	1 cut(s)	449
ErhI	CCWWGG	2 cut(s)	561, 940
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	1 cut(s)	686
FaiI	YATR	8 cut(s)	501, 503, 505, 570, 633, 684, 879, 993
FaqI	GGGAC	3 cut(s)	215, 315, 816
FatI	CATG	1 cut(s)	682
FauI	CCCGC	1 cut(s)	362
FbaI	TGATCA	2 cut(s)	40, 828
FriOI	GRGCYC	1 cut(s)	449
FspBI	CTAG	1 cut(s)	870
GsaI	CCCAGC	1 cut(s)	302
HaeIII	GGCC	9 cut(s)	65, 80, 256, 311, 334, 413, 433, 486, 966
Hin1II	CATG	1 cut(s)	686
HinfI	GANTC	5 cut(s)	98, 113, 140, 362, 494
Hpy188I	TCNGA	5 cut(s)	92, 112, 444, 663, 936
Hpy188III	TCNNGA	1 cut(s)	929
Hpy99I	CGWCG	1 cut(s)	696
HpyAV	CCTTC	5 cut(s)	837, 842, 875, 905, 966
HpyCH4III	ACNGT	3 cut(s)	37, 200, 306
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	7 cut(s)	131, 207, 394, 557, 581, 682, 755
HpyF3I	CTNAG	8 cut(s)	109, 336, 360, 378, 450, 623, 935, 951
HpySE526I	ACGT	1 cut(s)	467
Hsp92II	CATG	1 cut(s)	686
Ksp22I	TGATCA	2 cut(s)	40, 828
Kzo9I	GATC	7 cut(s)	7, 40, 437, 571, 828, 865, 931
LmnI	GCTCC	3 cut(s)	93, 444, 707
Lsp1109I	GCAGC	9 cut(s)	406, 418, 565, 569, 739, 751, 758, 767, 770
LweI	GCATC	2 cut(s)	592, 667
MaeI	CTAG	1 cut(s)	870
MaeII	ACGT	1 cut(s)	467
MaeIII	GTNAC	5 cut(s)	50, 268, 463, 853, 920
MalI	GATC	7 cut(s)	9, 42, 439, 573, 830, 867, 933
MboI	GATC	7 cut(s)	7, 40, 437, 571, 828, 865, 931
MboII	GAAGA	5 cut(s)	107, 149, 196, 650, 683
MflI	RGATCY	2 cut(s)	7, 437
MhlI	GDGCHC	1 cut(s)	449
MlsI	TGGCCA	1 cut(s)	966
MluCI	AATT	9 cut(s)	242, 319, 613, 674, 728, 777, 806, 810, 1029
MluNI	TGGCCA	1 cut(s)	966
MlyI	GAGTC	4 cut(s)	92, 107, 134, 371
MmeI	TCCRAC	1 cut(s)	174
Mox20I	TGGCCA	1 cut(s)	966
MscI	TGGCCA	1 cut(s)	966
MseI	TTAA	3 cut(s)	12, 809, 1020
Msp20I	TGGCCA	1 cut(s)	966
MspA1I	CMGCKG	2 cut(s)	749, 764
MspR9I	CCNGG	4 cut(s)	415, 428, 458, 816
MvaI	CCWGG	1 cut(s)	816
NciI	CCSGG	3 cut(s)	415, 428, 458
NdeII	GATC	7 cut(s)	7, 40, 437, 571, 828, 865, 931
NlaIII	CATG	1 cut(s)	686
NlaIV	GGNNCC	3 cut(s)	106, 432, 709
NmeAIII	GCCGAG	2 cut(s)	106, 459
NmuCI	GTSAC	1 cut(s)	920
NspI	RCATGY	1 cut(s)	686
NspV	TTCGAA	2 cut(s)	789, 796
PceI	AGGCCT	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	2 cut(s)	320, 624
PfeI	GAWTC	1 cut(s)	494
PleI	GAGTC	4 cut(s)	92, 107, 134, 370
PpsI	GAGTC	4 cut(s)	92, 107, 134, 370
PshBI	ATTAAT	1 cut(s)	809
Psp124BI	GAGCTC	1 cut(s)	449
Psp6I	CCWGG	1 cut(s)	814
PspEI	GGTNACC	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	814
PspN4I	GGNNCC	3 cut(s)	106, 432, 709
PspPI	GGNCC	5 cut(s)	220, 412, 431, 480, 782
PstI	CTGCAG	2 cut(s)	559, 757
PstNI	CAGNNNCTG	3 cut(s)	343, 752, 764
PsuI	RGATCY	2 cut(s)	7, 437
RsaI	GTAC	2 cut(s)	455, 907
RsaNI	GTAC	2 cut(s)	454, 906
SacI	GAGCTC	1 cut(s)	449
SaqAI	TTAA	3 cut(s)	12, 809, 1020
Sau3AI	GATC	7 cut(s)	7, 40, 437, 571, 828, 865, 931
Sau96I	GGNCC	5 cut(s)	220, 412, 431, 480, 782
ScaI	AGTACT	1 cut(s)	907
SchI	GAGTC	4 cut(s)	92, 107, 134, 371
ScrFI	CCNGG	4 cut(s)	415, 428, 458, 816
SduI	GDGCHC	1 cut(s)	449
SfaNI	GCATC	2 cut(s)	592, 667
SfcI	CTRYAG	2 cut(s)	555, 753
SfuI	TTCGAA	2 cut(s)	789, 796
SinI	GGWCC	3 cut(s)	220, 480, 782
Sse9I	AATT	9 cut(s)	242, 319, 613, 674, 728, 777, 806, 810, 1029
SseBI	AGGCCT	1 cut(s)	334
SsiI	CCGC	8 cut(s)	257, 282, 369, 424, 743, 749, 762, 887
SspMI	CTAG	1 cut(s)	870
SstI	GAGCTC	1 cut(s)	449
StuI	AGGCCT	1 cut(s)	334
StyD4I	CCNGG	4 cut(s)	413, 426, 456, 814
StyI	CCWWGG	2 cut(s)	561, 940
TaaI	ACNGT	3 cut(s)	37, 200, 306
TaiI	ACGT	1 cut(s)	470
TaqI	TCGA	6 cut(s)	323, 329, 574, 592, 789, 796
TasI	AATT	9 cut(s)	242, 319, 613, 674, 728, 777, 806, 810, 1029
TatI	WGTACW	1 cut(s)	905
TauI	GCSGC	5 cut(s)	259, 426, 746, 752, 764
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	3 cut(s)	12, 809, 1020
Tru9I	TTAA	3 cut(s)	12, 809, 1020
TscAI	CASTG	3 cut(s)	344, 550, 922
TseFI	GTSAC	1 cut(s)	920
TseI	GCWGC	9 cut(s)	394, 406, 557, 578, 746, 752, 755, 758, 764
Tsp45I	GTSAC	1 cut(s)	920
TspDTI	ATGAA	2 cut(s)	157, 894
TspRI	CASTG	3 cut(s)	344, 550, 922
VpaK11BI	GGWCC	3 cut(s)	220, 480, 782
VspI	ATTAAT	1 cut(s)	809
XapI	RAATTY	2 cut(s)	319, 674
XceI	RCATGY	1 cut(s)	686
XspI	CTAG	1 cut(s)	870
ZrmI	AGTACT	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.