RLG00000027494

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
12154092 .. 12156996
2905 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027494

Sequence Viewer

Length: 1374 bp
ATGTTGGATCTTAATGTTGATGTCATTAGCTCTACCGTTGATCAATCCAGTTACGATGATAAGGCCAGAGCTTTGGAGGCCGAGAAGCTCCGAGAAGACTCCGGCTCCTCAGACTCCTCTGTGGTCAATGCAGAGGAAGACTCTTACTCCAACAACACCTCCCCATTCATCTTTGATATTTTGAAGACAGACAAACACGGTCTTTGCAACAACAAAGAGGACCAGATTGTCCCCTCGCCTGAATTTGCTACAAAGCCGCTTTTTCCGGTGACTGGAGACGGCGGAGGAGGAGGAGGAGGAGGAGAGCTGGGACTGTTGGCCTCGTCAAATTCGACATCGAGGCCTCAGTGGCTGAACTTGTCTTTTGCTGAGTCCGGTGGGCAGGCTGAGCTGAAAGTTGTGCAGCAGAAACAGCAGCAGGCCCGGAAAAGTCGCCGGGGGCCGAGATCTCGGAGCTCTCAGTACCGGGGAGTTACGTTTTACCGGAGGACCGGCCGGTGGGAATCGCATATATGGGATTGTGGGAAGCAAGTTTATTTAGGTGGATTTGACACTGCTCATTCTGCAGCCAAGGCGTATGATCGAGCTGCAATCAAGTTTCGAGGAGTTGATGCTGATATCAATTTCGTGCTAACCGATTACGAGGAAGATTTGAAACAGATGAGGCATCTGAACAAAGAAGAATTCGTGCACGTGCTTCGTCGCCAAAGCAATGGAGCCTCTCGTGGGAACTCAAAATTGAGAGGCGTGGCGGCAGCGGCAGCCGCTGCTGTGCCCAAAATTGGTCCATTCGAAATTCGAATGGGACAATTAATTCCTGGGAATAAGTTGATCAAATGTAATGGAAGGGAAGGAGTTACCAATTTTGATCCTAGTATTTATGAAGGGGCGGTAGTAGTAGATGCCAGTACTGAAGGCAGTGGTCACAATCTTGATCTGAGCCTTGGGATTTCTCAGCCTTCTACTGGCCAAAAGAGGAAAGCCTTTGAAATACTTACCAAAGAGAAGCCAATGGTTAATGGCTCTGCTTCTGCAGCTGGGGGACAACCACTTAATGCTATAGCAATGCTATCCAAGCATCCTGCCTTGTATTCTGAGATATATCCGGGTTTCTTACATAAAACTGAGGAAATGGCAACAGATCATCATAAGAGAATCCAAGCAGTTTCTTCACCGAGTTTTTCAAACTGGGCATGGCAAATGAACGGAAACAACAACAATGTTACTCCAATGCAAGTGTTCTCTATTGCAGCATCATCAGGATTCTCATCTTCCATAGCTACCGTTCCTCCATCAGCCACTAACCAGCTTCCACCAATTCTCCAAGACAATTCTACTTACAATCTGCGCCACCCTTTTCCCACCAGTTTGTAA

Protein Analysis

458

Amino Acids

49.57

Weight (kDa)

7.74

Isoelectric Point (pI)

52.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 154 - 202 1.2e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AciI CCGC 6 cut(s) 257, 282, 752, 758, 765, 890
AclWI GGATC 2 cut(s) 15, 863
AcoI YGGCCR 2 cut(s) 493, 967
AcsI RAATTY 4 cut(s) 242, 328, 683, 795
AcuI CTGAAG 1 cut(s) 933
AcvI CACGTG 1 cut(s) 694
AfaI GTAC 2 cut(s) 464, 910
AfiI CCNNNNNNNGG 5 cut(s) 272, 498, 726, 782, 965
AgsI TTSAA 4 cut(s) 184, 655, 989, 1185
AjnI CCWGG 1 cut(s) 817
Alw21I GWGCWC 2 cut(s) 458, 693
Alw26I GTCTC 1 cut(s) 270
Alw44I GTGCAC 1 cut(s) 689
AlwI GGATC 2 cut(s) 15, 863
AlwNI CAGNNNCTG 2 cut(s) 352, 767
AoxI GGCC 8 cut(s) 63, 78, 318, 341, 420, 440, 493, 967
ApaLI GTGCAC 1 cut(s) 689
ApeKI GCWGC 9 cut(s) 403, 415, 566, 587, 755, 761, 767, 1034, 1250
ApoI RAATTY 4 cut(s) 242, 328, 683, 795
AseI ATTAAT 1 cut(s) 812
AspLEI GCGC 1 cut(s) 1350
AspS9I GGNCC 5 cut(s) 220, 421, 440, 489, 785
AsuC2I CCSGG 4 cut(s) 424, 437, 467, 1107
AsuHPI GGTGA 2 cut(s) 280, 1164
AsuII TTCGAA 2 cut(s) 792, 799
AvaII GGWCC 3 cut(s) 220, 489, 785
BaeGI GKGCMC 2 cut(s) 693, 777
BalI TGGCCA 1 cut(s) 969
BanII GRGCYC 1 cut(s) 458
BauI CACGAG 1 cut(s) 723
BbrPI CACGTG 1 cut(s) 694
BbsI GAAGAC 3 cut(s) 102, 144, 191
Bbv12I GWGCWC 2 cut(s) 458, 693
BbvI GCAGC 9 cut(s) 415, 427, 574, 578, 754, 767, 773, 1046, 1262
BccI CCATC 1 cut(s) 1300
BceAI ACGGC 1 cut(s) 295
BcgI CGANNNNNNTGC 2 cut(s) 680, 714
BciT130I CCWGG 1 cut(s) 819
BclI TGATCA 2 cut(s) 40, 831
BcnI CCSGG 4 cut(s) 424, 437, 467, 1107
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 1 cut(s) 873
BfmI CTRYAG 3 cut(s) 564, 1032, 1059
BglI GCCNNNNNGGC 1 cut(s) 349
BglII AGATCT 1 cut(s) 446
BlpI GCTNAGC 1 cut(s) 387
BmcAI AGTACT 1 cut(s) 910
Bme1390I CCNGG 5 cut(s) 424, 437, 467, 819, 1107
Bme18I GGWCC 3 cut(s) 220, 489, 785
BmgT120I GGNCC 5 cut(s) 220, 421, 440, 489, 785
BmiI GGNNCC 3 cut(s) 106, 441, 718
BmrFI CCNGG 5 cut(s) 424, 437, 467, 819, 1107
BmrI ACTGGG 1 cut(s) 1198
BmsI GCATC 5 cut(s) 601, 676, 892, 1087, 1262
BmuI ACTGGG 1 cut(s) 1198
BpiI GAAGAC 3 cut(s) 102, 144, 191
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BpmI CTGGAG 1 cut(s) 294
Bpu1102I GCTNAGC 1 cut(s) 387
Bpu14I TTCGAA 2 cut(s) 792, 799
BpuMI CCSGG 4 cut(s) 424, 437, 467, 1107
BsaAI YACGTR 1 cut(s) 694
BsaBI GATNNNNATC 1 cut(s) 1267
BsaJI CCNNGG 5 cut(s) 436, 466, 570, 818, 943
BsaWI WCCGGW 3 cut(s) 265, 374, 483
Bsc4I CCNNNNNNNGG 5 cut(s) 272, 498, 726, 782, 965
Bse118I RCCGGY 2 cut(s) 491, 495
Bse1I ACTGG 6 cut(s) 48, 277, 906, 970, 1193, 1365
Bse3DI GCAATG 2 cut(s) 718, 1071
Bse8I GATNNNNATC 1 cut(s) 1267
BseBI CCWGG 1 cut(s) 819
BseDI CCNNGG 5 cut(s) 436, 466, 570, 818, 943
BseGI GGATG 1 cut(s) 1078
BseJI GATNNNNATC 1 cut(s) 1267
BseLI CCNNNNNNNGG 5 cut(s) 272, 498, 726, 782, 965
BseMI GCAATG 2 cut(s) 718, 1071
BseMII CTCAG 9 cut(s) 123, 359, 360, 378, 473, 929, 968, 1086, 1116
BseNI ACTGG 6 cut(s) 48, 277, 906, 970, 1193, 1365
BseRI GAGGAG 9 cut(s) 97, 106, 300, 303, 306, 309, 312, 315, 618
BseSI GKGCMC 2 cut(s) 693, 777
BseX3I CGGCCG 1 cut(s) 493
BseXI GCAGC 9 cut(s) 415, 427, 574, 578, 754, 767, 773, 1046, 1262
BseYI CCCAGC 2 cut(s) 307, 1037
BsgI GTGCAG 1 cut(s) 422
Bsh1285I CGRYCG 1 cut(s) 496
BshFI GGCC 8 cut(s) 65, 80, 320, 343, 422, 442, 495, 969
BsiEI CGRYCG 1 cut(s) 496
BsiHKAI GWGCWC 2 cut(s) 458, 693
BslFI GGGAC 4 cut(s) 215, 324, 819, 1056
BslI CCNNNNNNNGG 5 cut(s) 272, 498, 726, 782, 965
BsmAI GTCTC 1 cut(s) 270
BsmBI CGTCTC 1 cut(s) 270
BsmFI GGGAC 4 cut(s) 215, 324, 819, 1056
BsnI GGCC 8 cut(s) 65, 80, 320, 343, 422, 442, 495, 969
Bsp119I TTCGAA 2 cut(s) 792, 799
Bsp1286I GDGCHC 3 cut(s) 458, 693, 777
Bsp143I GATC 8 cut(s) 7, 40, 446, 580, 831, 868, 934, 1141
Bsp1720I GCTNAGC 1 cut(s) 387
BspACI CCGC 6 cut(s) 257, 282, 752, 758, 765, 890
BspANI GGCC 8 cut(s) 65, 80, 320, 343, 422, 442, 495, 969
BspCNI CTCAG 9 cut(s) 122, 358, 361, 379, 472, 930, 967, 1087, 1117
BspLI GGNNCC 3 cut(s) 106, 441, 718
BspMAI CTGCAG 2 cut(s) 568, 1036
BspPI GGATC 2 cut(s) 15, 863
BspT104I TTCGAA 2 cut(s) 792, 799
BsrDI GCAATG 2 cut(s) 718, 1071
BsrFI RCCGGY 2 cut(s) 491, 495
BsrI ACTGG 6 cut(s) 48, 277, 906, 970, 1193, 1365
BssAI RCCGGY 2 cut(s) 491, 495
BssECI CCNNGG 5 cut(s) 436, 466, 570, 818, 943
BssMI GATC 8 cut(s) 7, 40, 446, 580, 831, 868, 934, 1141
BssSI CACGAG 1 cut(s) 723
BssT1I CCWWGG 2 cut(s) 570, 943
Bst2BI CACGAG 1 cut(s) 723
Bst2UI CCWGG 1 cut(s) 819
Bst4CI ACNGT 4 cut(s) 37, 200, 315, 1285
BstAPI GCANNNNNTGC 1 cut(s) 767
BstBAI YACGTR 1 cut(s) 694
BstBI TTCGAA 2 cut(s) 792, 799
BstC8I GCNNGC 2 cut(s) 384, 420
BstDEI CTNAG 9 cut(s) 109, 345, 369, 387, 459, 938, 954, 1095, 1125
BstF5I GGATG 1 cut(s) 1078
BstHHI GCGC 1 cut(s) 1350
BstKTI GATC 8 cut(s) 10, 43, 449, 583, 834, 871, 937, 1144
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 8 cut(s) 7, 40, 446, 580, 831, 868, 934, 1141
BstMCI CGRYCG 1 cut(s) 496
BstNI CCWGG 1 cut(s) 819
BstSCI CCNGG 5 cut(s) 422, 435, 465, 817, 1105
BstSFI CTRYAG 3 cut(s) 564, 1032, 1059
BstSLI GKGCMC 2 cut(s) 693, 777
BstV1I GCAGC 9 cut(s) 415, 427, 574, 578, 754, 767, 773, 1046, 1262
BstV2I GAAGAC 3 cut(s) 102, 144, 191
BstX2I RGATCY 2 cut(s) 7, 446
BstXI CCANNNNNNTGG 2 cut(s) 73, 713
BstYI RGATCY 2 cut(s) 7, 446
BstZI CGGCCG 1 cut(s) 493
BsuRI GGCC 8 cut(s) 65, 80, 320, 343, 422, 442, 495, 969
BtsCI GGATG 1 cut(s) 1078
BtsI GCAGTG 2 cut(s) 552, 925
BtsIMutI CAGTG 3 cut(s) 353, 552, 925
Cac8I GCNNGC 2 cut(s) 384, 420
CaiI CAGNNNCTG 2 cut(s) 352, 767
CfoI GCGC 1 cut(s) 1350
Cfr10I RCCGGY 2 cut(s) 491, 495
Cfr13I GGNCC 5 cut(s) 220, 421, 440, 489, 785
Csp6I GTAC 2 cut(s) 463, 909
CviAII CATG 1 cut(s) 1194
CviQI GTAC 2 cut(s) 463, 909
DdeI CTNAG 9 cut(s) 109, 345, 369, 387, 459, 938, 954, 1095, 1125
DpnI GATC 8 cut(s) 9, 42, 448, 582, 833, 870, 936, 1143
DpnII GATC 8 cut(s) 7, 40, 446, 580, 831, 868, 934, 1141
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 2 cut(s) 493, 967
EagI CGGCCG 1 cut(s) 493
EciI GGCGGA 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 456
EclXI CGGCCG 1 cut(s) 493
Eco130I CCWWGG 2 cut(s) 570, 943
Eco147I AGGCCT 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 458
Eco32I GATATC 1 cut(s) 619
Eco47I GGWCC 3 cut(s) 220, 489, 785
Eco52I CGGCCG 1 cut(s) 493
Eco53kI GAGCTC 1 cut(s) 456
Eco57I CTGAAG 1 cut(s) 933
Eco72I CACGTG 1 cut(s) 694
EcoICRI GAGCTC 1 cut(s) 456
EcoRI GAATTC 1 cut(s) 683
EcoRII CCWGG 1 cut(s) 817
EcoRV GATATC 1 cut(s) 619
EcoT14I CCWWGG 2 cut(s) 570, 943
EcoT38I GRGCYC 1 cut(s) 458
ErhI CCWWGG 2 cut(s) 570, 943
Esp3I CGTCTC 1 cut(s) 270
FaeI CATG 1 cut(s) 1197
FaqI GGGAC 4 cut(s) 215, 324, 819, 1056
FatI CATG 1 cut(s) 1193
FbaI TGATCA 2 cut(s) 40, 831
FokI GGATG 1 cut(s) 1065
FriOI GRGCYC 1 cut(s) 458
FspBI CTAG 1 cut(s) 873
GlaI GCGC 1 cut(s) 1349
GsaI CCCAGC 2 cut(s) 311, 1041
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 8 cut(s) 65, 80, 320, 343, 422, 442, 495, 969
HhaI GCGC 1 cut(s) 1350
Hin1II CATG 1 cut(s) 1197
Hin6I GCGC 1 cut(s) 1348
HinP1I GCGC 1 cut(s) 1348
HinfI GANTC 7 cut(s) 98, 113, 140, 371, 503, 1155, 1263
HphI GGTGA 2 cut(s) 280, 1164
Hpy166II GTNNAC 1 cut(s) 691
Hpy188I TCNGA 6 cut(s) 92, 112, 453, 672, 939, 1096
Hpy188III TCNNGA 2 cut(s) 932, 1260
Hpy8I GTNNAC 1 cut(s) 691
Hpy99I CGWCG 1 cut(s) 705
HpyAV CCTTC 5 cut(s) 840, 845, 878, 908, 969
HpyCH4III ACNGT 4 cut(s) 37, 200, 315, 1285
HpyCH4IV ACGT 2 cut(s) 476, 693
HpyCH4V TGCA 9 cut(s) 131, 207, 403, 566, 590, 691, 1034, 1234, 1250
HpyF3I CTNAG 9 cut(s) 109, 345, 369, 387, 459, 938, 954, 1095, 1125
HpySE526I ACGT 2 cut(s) 476, 693
Hsp92II CATG 1 cut(s) 1197
HspAI GCGC 1 cut(s) 1348
Ksp22I TGATCA 2 cut(s) 40, 831
Kzo9I GATC 8 cut(s) 7, 40, 446, 580, 831, 868, 934, 1141
LmnI GCTCC 4 cut(s) 93, 110, 453, 716
Lsp1109I GCAGC 9 cut(s) 415, 427, 574, 578, 754, 767, 773, 1046, 1262
LweI GCATC 5 cut(s) 601, 676, 892, 1087, 1262
MaeI CTAG 1 cut(s) 873
MaeII ACGT 2 cut(s) 476, 693
MaeIII GTNAC 6 cut(s) 50, 268, 472, 856, 923, 1222
MalI GATC 8 cut(s) 9, 42, 448, 582, 833, 870, 936, 1143
MboI GATC 8 cut(s) 7, 40, 446, 580, 831, 868, 934, 1141
MboII GAAGA 7 cut(s) 107, 149, 196, 659, 692, 1161, 1263
MflI RGATCY 2 cut(s) 7, 446
MhlI GDGCHC 3 cut(s) 458, 693, 777
MlsI TGGCCA 1 cut(s) 969
MluNI TGGCCA 1 cut(s) 969
MlyI GAGTC 4 cut(s) 92, 107, 134, 380
MmeI TCCRAC 1 cut(s) 174
Mox20I TGGCCA 1 cut(s) 969
MscI TGGCCA 1 cut(s) 969
MseI TTAA 4 cut(s) 12, 812, 1017, 1053
Msp20I TGGCCA 1 cut(s) 969
MspA1I CMGCKG 3 cut(s) 758, 767, 1037
MspR9I CCNGG 5 cut(s) 424, 437, 467, 819, 1107
MvaI CCWGG 1 cut(s) 819
NciI CCSGG 4 cut(s) 424, 437, 467, 1107
NdeII GATC 8 cut(s) 7, 40, 446, 580, 831, 868, 934, 1141
NlaIII CATG 1 cut(s) 1197
NlaIV GGNNCC 3 cut(s) 106, 441, 718
NmeAIII GCCGAG 2 cut(s) 106, 468
NmuCI GTSAC 2 cut(s) 268, 923
NspV TTCGAA 2 cut(s) 792, 799
PceI AGGCCT 1 cut(s) 343
PcsI WCGNNNNNNNCGW 2 cut(s) 329, 633
PfeI GAWTC 3 cut(s) 503, 1155, 1263
PleI GAGTC 4 cut(s) 92, 107, 134, 379
PmaCI CACGTG 1 cut(s) 694
PmlI CACGTG 1 cut(s) 694
PpsI GAGTC 4 cut(s) 92, 107, 134, 379
Ppu21I YACGTR 1 cut(s) 694
PshBI ATTAAT 1 cut(s) 812
Psp124BI GAGCTC 1 cut(s) 458
Psp6I CCWGG 1 cut(s) 817
PspCI CACGTG 1 cut(s) 694
PspFI CCCAGC 2 cut(s) 307, 1037
PspGI CCWGG 1 cut(s) 817
PspN4I GGNNCC 3 cut(s) 106, 441, 718
PspPI GGNCC 5 cut(s) 220, 421, 440, 489, 785
PstI CTGCAG 2 cut(s) 568, 1036
PstNI CAGNNNCTG 2 cut(s) 352, 767
PsuI RGATCY 2 cut(s) 7, 446
PvuII CAGCTG 1 cut(s) 1037
RsaI GTAC 2 cut(s) 464, 910
RsaNI GTAC 2 cut(s) 463, 909
SacI GAGCTC 1 cut(s) 458
SaqAI TTAA 4 cut(s) 12, 812, 1017, 1053
Sau3AI GATC 8 cut(s) 7, 40, 446, 580, 831, 868, 934, 1141
Sau96I GGNCC 5 cut(s) 220, 421, 440, 489, 785
ScaI AGTACT 1 cut(s) 910
SchI GAGTC 4 cut(s) 92, 107, 134, 380
ScrFI CCNGG 5 cut(s) 424, 437, 467, 819, 1107
SduI GDGCHC 3 cut(s) 458, 693, 777
SfaNI GCATC 5 cut(s) 601, 676, 892, 1087, 1262
SfcI CTRYAG 3 cut(s) 564, 1032, 1059
SfuI TTCGAA 2 cut(s) 792, 799
SinI GGWCC 3 cut(s) 220, 489, 785
SseBI AGGCCT 1 cut(s) 343
SsiI CCGC 6 cut(s) 257, 282, 752, 758, 765, 890
SspMI CTAG 1 cut(s) 873
SstI GAGCTC 1 cut(s) 458
StuI AGGCCT 1 cut(s) 343
StyD4I CCNGG 5 cut(s) 422, 435, 465, 817, 1105
StyI CCWWGG 2 cut(s) 570, 943
TaaI ACNGT 4 cut(s) 37, 200, 315, 1285
TaiI ACGT 2 cut(s) 479, 696
TaqI TCGA 6 cut(s) 332, 338, 583, 601, 792, 799
TatI WGTACW 1 cut(s) 908
TauI GCSGC 4 cut(s) 259, 755, 761, 767
TfiI GAWTC 3 cut(s) 503, 1155, 1263
Tru1I TTAA 4 cut(s) 12, 812, 1017, 1053
Tru9I TTAA 4 cut(s) 12, 812, 1017, 1053
TscAI CASTG 3 cut(s) 353, 559, 925
TseFI GTSAC 2 cut(s) 268, 923
TseI GCWGC 9 cut(s) 403, 415, 566, 587, 755, 761, 767, 1034, 1250
Tsp45I GTSAC 2 cut(s) 268, 923
TspDTI ATGAA 3 cut(s) 157, 897, 1217
TspGWI ACGGA 1 cut(s) 1221
TspRI CASTG 3 cut(s) 353, 559, 925
VneI GTGCAC 1 cut(s) 689
VpaK11BI GGWCC 3 cut(s) 220, 489, 785
VspI ATTAAT 1 cut(s) 812
XapI RAATTY 4 cut(s) 242, 328, 683, 795
XspI CTAG 1 cut(s) 873
ZrmI AGTACT 1 cut(s) 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.