Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g20380 FvH4_7g20380 FvH4_7g20380 FvH4_7g20380 FvH4_7g20380 FvH4_7g20380 FvH4_7g20380 |
| malus_domestica | MD01G1113400.v1.1 MD07G1180900.v1.1 |
| prunus_persica | Prupe.2G220100_v2.0.a1 |
| pyrus_communis | pycom01g14170 |
| rosa_chinensis | RchiOBHm_Chr1g0364341 |
| rosa_laevigata | RLG00000027494 |
| rosa_multiflora | Rmu_sc0007470.1_g000004 |
| rosa_roxburghii | Rroxscaffold_4G00292420 |
| rosa_rugosa | Rorug01G0315400 Rorug01G0315400 Rorug01G0315400 Rorug01G0315400 Rorug01G0315500 Rorug01G0315500 |
| rosa_samantha | Rh1AG323300 Rh1BG285800 Rh1CG302500 Rh1DG317300 |
| rosa_wichuraiana | Rw1G028640 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 586 |
| AccI | GTMKAC | 1 cut(s) | 392 |
| AccII | CGCG | 1 cut(s) | 534 |
| AciI | CCGC | 5 cut(s) | 342, 482, 532, 534, 562 |
| AclWI | GGATC | 1 cut(s) | 15 |
| AcoI | YGGCCR | 2 cut(s) | 439, 1006 |
| AcsI | RAATTY | 1 cut(s) | 749 |
| AcvI | CACGTG | 2 cut(s) | 760, 791 |
| AcyI | GRCGYC | 2 cut(s) | 386, 537 |
| AfaI | GTAC | 1 cut(s) | 530 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 332, 448, 792, 830, 1049 |
| AgsI | TTSAA | 4 cut(s) | 192, 232, 998, 1085 |
| AjnI | CCWGG | 1 cut(s) | 1204 |
| Alw21I | GWGCWC | 2 cut(s) | 524, 759 |
| Alw26I | GTCTC | 2 cut(s) | 254, 330 |
| Alw44I | GTGCAC | 1 cut(s) | 755 |
| AlwI | GGATC | 1 cut(s) | 15 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 412 |
| AoxI | GGCC | 8 cut(s) | 276, 401, 439, 450, 506, 1006, 1103, 1450 |
| ApaLI | GTGCAC | 1 cut(s) | 755 |
| ApeKI | GCWGC | 9 cut(s) | 484, 632, 653, 929, 932, 1124, 1133, 1346, 1394 |
| ApoI | RAATTY | 1 cut(s) | 749 |
| AspS9I | GGNCC | 5 cut(s) | 102, 123, 276, 506, 1451 |
| AsuC2I | CCSGG | 1 cut(s) | 121 |
| AsuHPI | GGTGA | 4 cut(s) | 16, 22, 340, 1260 |
| AvaII | GGWCC | 2 cut(s) | 102, 123 |
| BaeGI | GKGCMC | 1 cut(s) | 759 |
| BalI | TGGCCA | 2 cut(s) | 441, 1008 |
| BanII | GRGCYC | 3 cut(s) | 98, 524, 1255 |
| BbrPI | CACGTG | 2 cut(s) | 760, 791 |
| BbsI | GAAGAC | 3 cut(s) | 65, 120, 372 |
| Bbv12I | GWGCWC | 2 cut(s) | 524, 759 |
| BbvI | GCAGC | 9 cut(s) | 496, 640, 644, 941, 944, 1111, 1145, 1358, 1406 |
| BccI | CCATC | 5 cut(s) | 301, 843, 856, 1372, 1480 |
| BceAI | ACGGC | 2 cut(s) | 355, 411 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 635, 669, 746, 780 |
| BciT130I | CCWGG | 1 cut(s) | 1206 |
| BciVI | GTATCC | 1 cut(s) | 1212 |
| BcnI | CCSGG | 1 cut(s) | 121 |
| BcoDI | GTCTC | 2 cut(s) | 254, 330 |
| BfaI | CTAG | 4 cut(s) | 510, 636, 858, 957 |
| BfmI | CTRYAG | 3 cut(s) | 630, 1131, 1380 |
| BfuAI | ACCTGC | 1 cut(s) | 586 |
| BfuI | GTATCC | 1 cut(s) | 1212 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 409 |
| BglII | AGATCT | 1 cut(s) | 512 |
| Bme1390I | CCNGG | 2 cut(s) | 121, 1206 |
| Bme18I | GGWCC | 2 cut(s) | 102, 123 |
| BmgT120I | GGNCC | 5 cut(s) | 102, 123, 276, 506, 1451 |
| BmiI | GGNNCC | 7 cut(s) | 104, 124, 277, 507, 784, 1252, 1453 |
| BmrFI | CCNGG | 2 cut(s) | 121, 1206 |
| BmrI | ACTGGG | 1 cut(s) | 1319 |
| BmsI | GCATC | 8 cut(s) | 28, 667, 742, 912, 969, 976, 1186, 1358 |
| BmuI | ACTGGG | 1 cut(s) | 1319 |
| BpiI | GAAGAC | 3 cut(s) | 65, 120, 372 |
| BpmI | CTGGAG | 1 cut(s) | 1374 |
| Bpu10I | CCTNAGC | 1 cut(s) | 447 |
| BpuEI | CTTGAG | 1 cut(s) | 82 |
| BpuMI | CCSGG | 1 cut(s) | 121 |
| BsaAI | YACGTR | 2 cut(s) | 760, 791 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1239, 1363 |
| BsaHI | GRCGYC | 2 cut(s) | 386, 537 |
| BsaI | GGTCTC | 1 cut(s) | 254 |
| BsaJI | CCNNGG | 4 cut(s) | 488, 532, 1027, 1420 |
| BsaWI | WCCGGW | 4 cut(s) | 325, 332, 549, 779 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1372, 1401, 1402, 1431 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 332, 448, 792, 830, 1049 |
| Bse118I | RCCGGY | 1 cut(s) | 176 |
| Bse1I | ACTGG | 2 cut(s) | 33, 1325 |
| Bse3DI | GCAATG | 2 cut(s) | 178, 1069 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1239, 1363 |
| BseBI | CCWGG | 1 cut(s) | 1206 |
| BseDI | CCNNGG | 4 cut(s) | 488, 532, 1027, 1420 |
| BseGI | GGATG | 4 cut(s) | 867, 1177, 1203, 1472 |
| BseJI | GATNNNNATC | 2 cut(s) | 1239, 1363 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 332, 448, 792, 830, 1049 |
| BseMI | GCAATG | 2 cut(s) | 178, 1069 |
| BseMII | CTCAG | 8 cut(s) | 419, 420, 449, 461, 539, 867, 1036, 1052 |
| BseNI | ACTGG | 2 cut(s) | 33, 1325 |
| BseRI | GAGGAG | 4 cut(s) | 95, 124, 360, 1377 |
| BseSI | GKGCMC | 1 cut(s) | 759 |
| BseXI | GCAGC | 9 cut(s) | 496, 640, 644, 941, 944, 1111, 1145, 1358, 1406 |
| BseYI | CCCAGC | 1 cut(s) | 727 |
| Bsh1236I | CGCG | 1 cut(s) | 534 |
| Bsh1285I | CGRYCG | 1 cut(s) | 649 |
| BshFI | GGCC | 8 cut(s) | 278, 403, 441, 452, 508, 1008, 1105, 1452 |
| BsiEI | CGRYCG | 1 cut(s) | 649 |
| BsiHKAI | GWGCWC | 2 cut(s) | 524, 759 |
| BsiSI | CCGG | 6 cut(s) | 120, 177, 326, 333, 550, 780 |
| BslFI | GGGAC | 1 cut(s) | 136 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 332, 448, 792, 830, 1049 |
| BsmAI | GTCTC | 2 cut(s) | 254, 330 |
| BsmBI | CGTCTC | 1 cut(s) | 330 |
| BsmFI | GGGAC | 1 cut(s) | 136 |
| BsnI | GGCC | 8 cut(s) | 278, 403, 441, 452, 508, 1008, 1105, 1452 |
| Bso31I | GGTCTC | 1 cut(s) | 254 |
| Bsp1286I | GDGCHC | 4 cut(s) | 98, 524, 759, 1255 |
| Bsp143I | GATC | 5 cut(s) | 7, 512, 646, 1018, 1240 |
| BspACI | CCGC | 5 cut(s) | 342, 482, 532, 534, 562 |
| BspANI | GGCC | 8 cut(s) | 278, 403, 441, 452, 508, 1008, 1105, 1452 |
| BspCNI | CTCAG | 8 cut(s) | 418, 421, 450, 460, 538, 868, 1035, 1051 |
| BspFNI | CGCG | 1 cut(s) | 534 |
| BspLI | GGNNCC | 7 cut(s) | 104, 124, 277, 507, 784, 1252, 1453 |
| BspMAI | CTGCAG | 2 cut(s) | 634, 1135 |
| BspMI | ACCTGC | 1 cut(s) | 586 |
| BspPI | GGATC | 1 cut(s) | 15 |
| BspTNI | GGTCTC | 1 cut(s) | 254 |
| BsrDI | GCAATG | 2 cut(s) | 178, 1069 |
| BsrFI | RCCGGY | 1 cut(s) | 176 |
| BsrI | ACTGG | 2 cut(s) | 33, 1325 |
| BssAI | RCCGGY | 1 cut(s) | 176 |
| BssECI | CCNNGG | 4 cut(s) | 488, 532, 1027, 1420 |
| BssMI | GATC | 5 cut(s) | 7, 512, 646, 1018, 1240 |
| BssNI | GRCGYC | 2 cut(s) | 386, 537 |
| BssT1I | CCWWGG | 2 cut(s) | 1027, 1420 |
| Bst2UI | CCWGG | 1 cut(s) | 1206 |
| Bst4CI | ACNGT | 3 cut(s) | 248, 272, 1316 |
| Bst6I | CTCTTC | 1 cut(s) | 916 |
| BstACI | GRCGYC | 2 cut(s) | 386, 537 |
| BstBAI | YACGTR | 2 cut(s) | 760, 791 |
| BstC8I | GCNNGC | 3 cut(s) | 43, 178, 991 |
| BstDEI | CTNAG | 8 cut(s) | 405, 429, 447, 458, 525, 876, 1022, 1038 |
| BstDSI | CCRYGG | 1 cut(s) | 532 |
| BstEII | GGTNACC | 1 cut(s) | 328 |
| BstF5I | GGATG | 4 cut(s) | 867, 1177, 1203, 1472 |
| BstFNI | CGCG | 1 cut(s) | 534 |
| BstKTI | GATC | 5 cut(s) | 10, 515, 649, 1021, 1243 |
| BstMAI | GTCTC | 2 cut(s) | 254, 330 |
| BstMBI | GATC | 5 cut(s) | 7, 512, 646, 1018, 1240 |
| BstMCI | CGRYCG | 1 cut(s) | 649 |
| BstNI | CCWGG | 1 cut(s) | 1206 |
| BstPI | GGTNACC | 1 cut(s) | 328 |
| BstSCI | CCNGG | 2 cut(s) | 119, 1204 |
| BstSFI | CTRYAG | 3 cut(s) | 630, 1131, 1380 |
| BstSLI | GKGCMC | 1 cut(s) | 759 |
| BstUI | CGCG | 1 cut(s) | 534 |
| BstV1I | GCAGC | 9 cut(s) | 496, 640, 644, 941, 944, 1111, 1145, 1358, 1406 |
| BstV2I | GAAGAC | 3 cut(s) | 65, 120, 372 |
| BstX2I | RGATCY | 2 cut(s) | 7, 512 |
| BstYI | RGATCY | 2 cut(s) | 7, 512 |
| BsuI | GTATCC | 1 cut(s) | 1212 |
| BsuRI | GGCC | 8 cut(s) | 278, 403, 441, 452, 508, 1008, 1105, 1452 |
| BtgI | CCRYGG | 1 cut(s) | 532 |
| BtsCI | GGATG | 4 cut(s) | 867, 1177, 1203, 1472 |
| BtsI | GCAGTG | 2 cut(s) | 1009, 1432 |
| BtsIMutI | CAGTG | 6 cut(s) | 40, 413, 1009, 1321, 1332, 1432 |
| BveI | ACCTGC | 1 cut(s) | 586 |
| Cac8I | GCNNGC | 3 cut(s) | 43, 178, 991 |
| CaiI | CAGNNNCTG | 1 cut(s) | 412 |
| Cfr10I | RCCGGY | 1 cut(s) | 176 |
| Cfr13I | GGNCC | 5 cut(s) | 102, 123, 276, 506, 1451 |
| Cfr42I | CCGCGG | 1 cut(s) | 535 |
| CseI | GACGC | 2 cut(s) | 375, 526 |
| Csp6I | GTAC | 1 cut(s) | 529 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 814, 849 |
| CviAII | CATG | 4 cut(s) | 1154, 1290, 1301, 1480 |
| CviQI | GTAC | 1 cut(s) | 529 |
| DdeI | CTNAG | 8 cut(s) | 405, 429, 447, 458, 525, 876, 1022, 1038 |
| DpnI | GATC | 5 cut(s) | 9, 514, 648, 1020, 1242 |
| DpnII | GATC | 5 cut(s) | 7, 512, 646, 1018, 1240 |
| EaeI | YGGCCR | 2 cut(s) | 439, 1006 |
| Eam1104I | CTCTTC | 1 cut(s) | 916 |
| EarI | CTCTTC | 1 cut(s) | 916 |
| EciI | GGCGGA | 1 cut(s) | 357 |
| Ecl136II | GAGCTC | 1 cut(s) | 522 |
| Eco130I | CCWWGG | 2 cut(s) | 1027, 1420 |
| Eco147I | AGGCCT | 1 cut(s) | 403 |
| Eco24I | GRGCYC | 3 cut(s) | 98, 524, 1255 |
| Eco31I | GGTCTC | 1 cut(s) | 254 |
| Eco32I | GATATC | 2 cut(s) | 226, 685 |
| Eco47I | GGWCC | 2 cut(s) | 102, 123 |
| Eco53kI | GAGCTC | 1 cut(s) | 522 |
| Eco72I | CACGTG | 2 cut(s) | 760, 791 |
| Eco91I | GGTNACC | 1 cut(s) | 328 |
| EcoICRI | GAGCTC | 1 cut(s) | 522 |
| EcoO109I | RGGNCCY | 3 cut(s) | 102, 123, 506 |
| EcoO65I | GGTNACC | 1 cut(s) | 328 |
| EcoRII | CCWGG | 1 cut(s) | 1204 |
| EcoRV | GATATC | 2 cut(s) | 226, 685 |
| EcoT14I | CCWWGG | 2 cut(s) | 1027, 1420 |
| EcoT38I | GRGCYC | 3 cut(s) | 98, 524, 1255 |
| ErhI | CCWWGG | 2 cut(s) | 1027, 1420 |
| Esp3I | CGTCTC | 1 cut(s) | 330 |
| FaeI | CATG | 4 cut(s) | 1157, 1293, 1304, 1483 |
| FaqI | GGGAC | 1 cut(s) | 136 |
| FatI | CATG | 4 cut(s) | 1153, 1289, 1300, 1479 |
| FblI | GTMKAC | 1 cut(s) | 392 |
| FokI | GGATG | 4 cut(s) | 874, 1164, 1210, 1459 |
| FriOI | GRGCYC | 3 cut(s) | 98, 524, 1255 |
| FspBI | CTAG | 4 cut(s) | 510, 636, 858, 957 |
| GsaI | CCCAGC | 1 cut(s) | 731 |
| GsuI | CTGGAG | 1 cut(s) | 1374 |
| HaeIII | GGCC | 8 cut(s) | 278, 403, 441, 452, 508, 1008, 1105, 1452 |
| HapII | CCGG | 6 cut(s) | 120, 177, 326, 333, 550, 780 |
| HgaI | GACGC | 2 cut(s) | 375, 526 |
| Hin1I | GRCGYC | 2 cut(s) | 386, 537 |
| Hin1II | CATG | 4 cut(s) | 1157, 1293, 1304, 1483 |
| HincII | GTYRAC | 3 cut(s) | 19, 393, 952 |
| HindII | GTYRAC | 3 cut(s) | 19, 393, 952 |
| HinfI | GANTC | 7 cut(s) | 116, 163, 188, 431, 569, 1235, 1359 |
| HpaI | GTTAAC | 1 cut(s) | 19 |
| HpaII | CCGG | 6 cut(s) | 120, 177, 326, 333, 550, 780 |
| HphI | GGTGA | 4 cut(s) | 16, 22, 340, 1260 |
| Hpy166II | GTNNAC | 4 cut(s) | 19, 393, 757, 952 |
| Hpy188I | TCNGA | 6 cut(s) | 162, 168, 492, 519, 738, 1240 |
| Hpy188III | TCNNGA | 4 cut(s) | 229, 307, 875, 1356 |
| Hpy8I | GTNNAC | 4 cut(s) | 19, 393, 757, 952 |
| Hpy99I | CGWCG | 5 cut(s) | 391, 394, 397, 771, 1451 |
| HpyAV | CCTTC | 6 cut(s) | 495, 889, 962, 992, 1053, 1466 |
| HpyCH4III | ACNGT | 3 cut(s) | 248, 272, 1316 |
| HpyCH4IV | ACGT | 4 cut(s) | 542, 759, 790, 1446 |
| HpyCH4V | TGCA | 9 cut(s) | 255, 469, 632, 656, 757, 989, 1133, 1330, 1346 |
| HpyF3I | CTNAG | 8 cut(s) | 405, 429, 447, 458, 525, 876, 1022, 1038 |
| HpySE526I | ACGT | 4 cut(s) | 542, 759, 790, 1446 |
| Hsp92I | GRCGYC | 2 cut(s) | 386, 537 |
| Hsp92II | CATG | 4 cut(s) | 1157, 1293, 1304, 1483 |
| KroI | GCCGGC | 1 cut(s) | 176 |
| KroNI | GCCGGC | 1 cut(s) | 178 |
| KspAI | GTTAAC | 1 cut(s) | 19 |
| KspI | CCGCGG | 1 cut(s) | 535 |
| Kzo9I | GATC | 5 cut(s) | 7, 512, 646, 1018, 1240 |
| LmnI | GCTCC | 6 cut(s) | 82, 163, 519, 782, 1250, 1390 |
| Lsp1109I | GCAGC | 9 cut(s) | 496, 640, 644, 941, 944, 1111, 1145, 1358, 1406 |
| LweI | GCATC | 8 cut(s) | 28, 667, 742, 912, 969, 976, 1186, 1358 |
| MaeI | CTAG | 4 cut(s) | 510, 636, 858, 957 |
| MaeII | ACGT | 4 cut(s) | 542, 759, 790, 1446 |
| MaeIII | GTNAC | 5 cut(s) | 307, 328, 538, 937, 1091 |
| MalI | GATC | 5 cut(s) | 9, 514, 648, 1020, 1242 |
| MboI | GATC | 5 cut(s) | 7, 512, 646, 1018, 1240 |
| MflI | RGATCY | 2 cut(s) | 7, 512 |
| MhlI | GDGCHC | 4 cut(s) | 98, 524, 759, 1255 |
| MlsI | TGGCCA | 2 cut(s) | 441, 1008 |
| MluCI | AATT | 7 cut(s) | 302, 462, 688, 749, 869, 1085, 1399 |
| MluNI | TGGCCA | 2 cut(s) | 441, 1008 |
| MlyI | GAGTC | 3 cut(s) | 110, 157, 440 |
| MmeI | TCCRAC | 1 cut(s) | 185 |
| Mox20I | TGGCCA | 2 cut(s) | 441, 1008 |
| MroNI | GCCGGC | 1 cut(s) | 176 |
| MscI | TGGCCA | 2 cut(s) | 441, 1008 |
| MseI | TTAA | 3 cut(s) | 12, 18, 1113 |
| Msp20I | TGGCCA | 2 cut(s) | 441, 1008 |
| MspA1I | CMGCKG | 3 cut(s) | 534, 727, 1136 |
| MspI | CCGG | 6 cut(s) | 120, 177, 326, 333, 550, 780 |
| MspR9I | CCNGG | 2 cut(s) | 121, 1206 |
| MvaI | CCWGG | 1 cut(s) | 1206 |
| MvnI | CGCG | 1 cut(s) | 534 |
| NaeI | GCCGGC | 1 cut(s) | 178 |
| NciI | CCSGG | 1 cut(s) | 121 |
| NdeII | GATC | 5 cut(s) | 7, 512, 646, 1018, 1240 |
| NgoMIV | GCCGGC | 1 cut(s) | 176 |
| NlaIII | CATG | 4 cut(s) | 1157, 1293, 1304, 1483 |
| NlaIV | GGNNCC | 7 cut(s) | 104, 124, 277, 507, 784, 1252, 1453 |
| NmeAIII | GCCGAG | 1 cut(s) | 478 |
| NmuCI | GTSAC | 3 cut(s) | 307, 328, 538 |
| PceI | AGGCCT | 1 cut(s) | 403 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 389 |
| PdiI | GCCGGC | 1 cut(s) | 178 |
| PfeI | GAWTC | 4 cut(s) | 188, 569, 1235, 1359 |
| PflFI | GACNNNGTC | 1 cut(s) | 313 |
| PfoI | TCCNGGA | 1 cut(s) | 119 |
| Ple19I | CGATCG | 1 cut(s) | 649 |
| PleI | GAGTC | 3 cut(s) | 110, 157, 439 |
| PmaCI | CACGTG | 2 cut(s) | 760, 791 |
| PmlI | CACGTG | 2 cut(s) | 760, 791 |
| PpsI | GAGTC | 3 cut(s) | 110, 157, 439 |
| Ppu21I | YACGTR | 2 cut(s) | 760, 791 |
| PpuMI | RGGWCCY | 2 cut(s) | 102, 123 |
| Psp124BI | GAGCTC | 1 cut(s) | 524 |
| Psp5II | RGGWCCY | 2 cut(s) | 102, 123 |
| Psp6I | CCWGG | 1 cut(s) | 1204 |
| PspCI | CACGTG | 2 cut(s) | 760, 791 |
| PspEI | GGTNACC | 1 cut(s) | 328 |
| PspFI | CCCAGC | 1 cut(s) | 727 |
| PspGI | CCWGG | 1 cut(s) | 1204 |
| PspN4I | GGNNCC | 7 cut(s) | 104, 124, 277, 507, 784, 1252, 1453 |
| PspPI | GGNCC | 5 cut(s) | 102, 123, 276, 506, 1451 |
| PspPPI | RGGWCCY | 2 cut(s) | 102, 123 |
| PstI | CTGCAG | 2 cut(s) | 634, 1135 |
| PstNI | CAGNNNCTG | 1 cut(s) | 412 |
| PsuI | RGATCY | 2 cut(s) | 7, 512 |
| PsyI | GACNNNGTC | 1 cut(s) | 313 |
| PvuI | CGATCG | 1 cut(s) | 649 |
| PvuII | CAGCTG | 2 cut(s) | 727, 1136 |
| RsaI | GTAC | 1 cut(s) | 530 |
| RsaNI | GTAC | 1 cut(s) | 529 |
| SacI | GAGCTC | 1 cut(s) | 524 |
| SacII | CCGCGG | 1 cut(s) | 535 |
| SalI | GTCGAC | 1 cut(s) | 391 |
| SaqAI | TTAA | 3 cut(s) | 12, 18, 1113 |
| Sau3AI | GATC | 5 cut(s) | 7, 512, 646, 1018, 1240 |
| Sau96I | GGNCC | 5 cut(s) | 102, 123, 276, 506, 1451 |
| SchI | GAGTC | 3 cut(s) | 110, 157, 440 |
| ScrFI | CCNGG | 2 cut(s) | 121, 1206 |
| SduI | GDGCHC | 4 cut(s) | 98, 524, 759, 1255 |
| SfaNI | GCATC | 8 cut(s) | 28, 667, 742, 912, 969, 976, 1186, 1358 |
| SfcI | CTRYAG | 3 cut(s) | 630, 1131, 1380 |
| Sfr303I | CCGCGG | 1 cut(s) | 535 |
| SgrBI | CCGCGG | 1 cut(s) | 535 |
| SgrDI | CGTCGACG | 1 cut(s) | 391 |
| SinI | GGWCC | 2 cut(s) | 102, 123 |
| SmlI | CTYRAG | 1 cut(s) | 97 |
| SmoI | CTYRAG | 1 cut(s) | 97 |
| Sse9I | AATT | 7 cut(s) | 302, 462, 688, 749, 869, 1085, 1399 |
| SseBI | AGGCCT | 1 cut(s) | 403 |
| SsiI | CCGC | 5 cut(s) | 342, 482, 532, 534, 562 |
| SspMI | CTAG | 4 cut(s) | 510, 636, 858, 957 |
| SstI | GAGCTC | 1 cut(s) | 524 |
| StuI | AGGCCT | 1 cut(s) | 403 |
| StyD4I | CCNGG | 2 cut(s) | 119, 1204 |
| StyI | CCWWGG | 2 cut(s) | 1027, 1420 |
| TaaI | ACNGT | 3 cut(s) | 248, 272, 1316 |
| TaiI | ACGT | 4 cut(s) | 545, 762, 793, 1449 |
| TaqI | TCGA | 2 cut(s) | 78, 392 |
| TasI | AATT | 7 cut(s) | 302, 462, 688, 749, 869, 1085, 1399 |
| TauI | GCSGC | 1 cut(s) | 537 |
| TfiI | GAWTC | 4 cut(s) | 188, 569, 1235, 1359 |
| Tru1I | TTAA | 3 cut(s) | 12, 18, 1113 |
| Tru9I | TTAA | 3 cut(s) | 12, 18, 1113 |
| TscAI | CASTG | 6 cut(s) | 40, 413, 1009, 1321, 1332, 1432 |
| TseFI | GTSAC | 3 cut(s) | 307, 328, 538 |
| TseI | GCWGC | 9 cut(s) | 484, 632, 653, 929, 932, 1124, 1133, 1346, 1394 |
| Tsp45I | GTSAC | 3 cut(s) | 307, 328, 538 |
| TspDTI | ATGAA | 3 cut(s) | 734, 981, 1289 |
| TspGWI | ACGGA | 2 cut(s) | 127, 1263 |
| TspRI | CASTG | 6 cut(s) | 40, 413, 1009, 1321, 1332, 1432 |
| Tth111I | GACNNNGTC | 1 cut(s) | 313 |
| VneI | GTGCAC | 1 cut(s) | 755 |
| VpaK11BI | GGWCC | 2 cut(s) | 102, 123 |
| XapI | RAATTY | 1 cut(s) | 749 |
| XmiI | GTMKAC | 1 cut(s) | 392 |
| XspI | CTAG | 4 cut(s) | 510, 636, 858, 957 |