Rh1BG285800

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
42184261 .. 42187754
3494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG285800.1

Sequence Viewer

Length: 1377 bp
ATGTTGGATCTTAATGTTGATGTCATTAGCTCTACCGTTGATCAATCCAGTTACGATGATAAGGCCAGAGCTTTGGAGGCCGAGAAGCTCCGAGAAGACTCCGGCTCCTCAGACTCCTCTGTGGTCAATGCAGAGGAAGACTCTTACTCCAACAACACCTCCCCATTCATCTTTGATATTTTGAAGAAAGACAAACACGGTCTTTGCAACAACAAAGAGGACCAGATTGTCCCCTCGCCTGAATTTTCTACAAGGCCGCTTTTTCCGGTGACCGGAGACGGCGGAGGAGGAGGAGGAGAGCTGGGACTGTTGGCCTCGTCAAATTTGACATCGAGGCCCCAGTGGCTGAACTTGTCGTTTGCTGAGTCCGGCGGGCAGGCTGAGCTGAAAGTTGTGCAGCAGAAACAGCAGCAGGCCCGGAAAAGCCGCCGGGGGCCGAGATCTCGGAGCTCTCAGTACCGGGGAGTCACGTTTTACCGGAGGACCGGCCGGTGGGAATCGCATATATGGGATTGTGGGAAGCAAGTTTATTTAGGTGGATTTGACACTGCTCATTCTGCAGCCAAGGCGTATGATCGAGCTGCAATCAAGTTTCGAGGAGTTGATGCTGATATCAATTTCGTGCTAAGCGATTATGAGGAAGATTTGAAACAGATGAGGCATCTGAACAAAGAAGAATTCGTGCATGTGCTTCGTCGCCAAAGCAATGGTGCCTCTCGTGGGAACTCAAAATTGAGAGGCGTGGCAGCAGCGGCAGCAGCTGCTGCCGCTGTTGCTGCGCCCAAAATTGGTCCATTCGAAGTTCGAATGGGACAATTAATTCCTGGGAATAAGTTGATCAAATGTAATGGAAGGGAAGGAGTTACCAACTTTGATCCTAGTATTTATGAAGGGGCGGTAGTAGTAGATGCCAGTACTGAAGGCAGTGGTCACAATCTTGATCTGAGCCTTGGGATGTCTCAGCCTTCTACTGGCCAAAAGAGGAAAGCCTTTGAAATACTTACCAAAGAGAAGCCAATGGTTAATGGCTCTGCTTCTGCAGCTGGGGGACAACCACTTAATGCTATAGCAATGCTATCCAAGCATCCTGCCTATTCTGAGATATATCCGGGTTTCTTACATAAAACTGAGGAAATGGCAACAGATCATCATAAGAGAATCCAAGCAGTTTCTTCACCAAGGTTTTCAAACTGGGCATGGCAAATGAACGGAAACAACAACAATGTTACTCCAATGCAAGTGTTCTCTATTGCAGCATCATCAGGATTCTCATCTTCCATAGCTACCGTACCTCCATCAGCCACTAACCAGCTTCCACCAATTCTCCAAGACAATTCTACTTACAATCTGCGCCACCCCTTTCCCACCAGTTTGTAA

Protein Analysis

458

Amino Acids

49.78

Weight (kDa)

8.56

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 152 - 200 1.2e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 710
AciI CCGC 7 cut(s) 257, 282, 372, 427, 752, 768, 896
AclWI GGATC 2 cut(s) 15, 869
AcoI YGGCCR 2 cut(s) 487, 973
AcsI RAATTY 3 cut(s) 242, 322, 677
AcuI CTGAAG 1 cut(s) 939
AfaI GTAC 3 cut(s) 458, 916, 1290
AfiI CCNNNNNNNGG 5 cut(s) 272, 492, 720, 788, 971
AgsI TTSAA 4 cut(s) 184, 649, 995, 1188
AjnI CCWGG 1 cut(s) 823
Alw21I GWGCWC 1 cut(s) 452
Alw26I GTCTC 2 cut(s) 270, 963
AlwI GGATC 2 cut(s) 15, 869
AlwNI CAGNNNCTG 3 cut(s) 346, 761, 764
AoxI GGCC 9 cut(s) 63, 78, 254, 312, 335, 414, 434, 487, 973
ApoI RAATTY 3 cut(s) 242, 322, 677
AseI ATTAAT 1 cut(s) 818
AspLEI GCGC 2 cut(s) 781, 1353
AspS9I GGNCC 6 cut(s) 220, 336, 415, 434, 483, 791
AsuC2I CCSGG 4 cut(s) 418, 431, 461, 1110
AsuHPI GGTGA 2 cut(s) 280, 1167
AsuII TTCGAA 2 cut(s) 798, 805
AvaII GGWCC 3 cut(s) 220, 483, 791
BalI TGGCCA 1 cut(s) 975
BanI GGYRCC 1 cut(s) 710
BanII GRGCYC 1 cut(s) 452
BauI CACGAG 1 cut(s) 717
BbsI GAAGAC 2 cut(s) 102, 144
Bbv12I GWGCWC 1 cut(s) 452
BccI CCATC 1 cut(s) 1303
BceAI ACGGC 1 cut(s) 295
BcgI CGANNNNNNTGC 2 cut(s) 674, 708
BciT130I CCWGG 1 cut(s) 825
BclI TGATCA 2 cut(s) 40, 837
BcnI CCSGG 4 cut(s) 418, 431, 461, 1110
BcoDI GTCTC 2 cut(s) 270, 963
BfaI CTAG 1 cut(s) 879
BfmI CTRYAG 3 cut(s) 558, 1038, 1065
BglI GCCNNNNNGGC 1 cut(s) 343
BglII AGATCT 1 cut(s) 440
BlpI GCTNAGC 2 cut(s) 381, 626
BmcAI AGTACT 1 cut(s) 916
Bme1390I CCNGG 5 cut(s) 418, 431, 461, 825, 1110
Bme18I GGWCC 3 cut(s) 220, 483, 791
BmgT120I GGNCC 6 cut(s) 220, 336, 415, 434, 483, 791
BmiI GGNNCC 4 cut(s) 106, 338, 435, 712
BmrFI CCNGG 5 cut(s) 418, 431, 461, 825, 1110
BmrI ACTGGG 2 cut(s) 334, 1201
BmsI GCATC 5 cut(s) 595, 670, 898, 1093, 1265
BmuI ACTGGG 2 cut(s) 334, 1201
BpiI GAAGAC 2 cut(s) 102, 144
BplI GAGNNNNNCTC 2 cut(s) 125, 157
Bpu1102I GCTNAGC 2 cut(s) 381, 626
Bpu14I TTCGAA 2 cut(s) 798, 805
BpuMI CCSGG 4 cut(s) 418, 431, 461, 1110
BsaBI GATNNNNATC 1 cut(s) 1270
BsaJI CCNNGG 6 cut(s) 430, 460, 564, 824, 949, 1178
BsaWI WCCGGW 3 cut(s) 265, 272, 477
Bsc4I CCNNNNNNNGG 5 cut(s) 272, 492, 720, 788, 971
Bse118I RCCGGY 2 cut(s) 485, 489
Bse1I ACTGG 6 cut(s) 48, 340, 912, 976, 1196, 1368
Bse3DI GCAATG 2 cut(s) 712, 1077
Bse8I GATNNNNATC 1 cut(s) 1270
BseBI CCWGG 1 cut(s) 825
BseDI CCNNGG 6 cut(s) 430, 460, 564, 824, 949, 1178
BseGI GGATG 2 cut(s) 960, 1084
BseJI GATNNNNATC 1 cut(s) 1270
BseLI CCNNNNNNNGG 5 cut(s) 272, 492, 720, 788, 971
BseMI GCAATG 2 cut(s) 712, 1077
BseMII CTCAG 8 cut(s) 123, 354, 372, 467, 935, 974, 1089, 1119
BseNI ACTGG 6 cut(s) 48, 340, 912, 976, 1196, 1368
BseRI GAGGAG 7 cut(s) 97, 106, 300, 303, 306, 309, 612
BseX3I CGGCCG 1 cut(s) 487
BseYI CCCAGC 2 cut(s) 301, 1043
BsgI GTGCAG 1 cut(s) 416
Bsh1285I CGRYCG 1 cut(s) 490
BshFI GGCC 9 cut(s) 65, 80, 256, 314, 337, 416, 436, 489, 975
BshNI GGYRCC 1 cut(s) 710
BsiEI CGRYCG 1 cut(s) 490
BsiHKAI GWGCWC 1 cut(s) 452
BslFI GGGAC 4 cut(s) 215, 318, 825, 1062
BslI CCNNNNNNNGG 5 cut(s) 272, 492, 720, 788, 971
BsmAI GTCTC 2 cut(s) 270, 963
BsmBI CGTCTC 1 cut(s) 270
BsmFI GGGAC 4 cut(s) 215, 318, 825, 1062
BsnI GGCC 9 cut(s) 65, 80, 256, 314, 337, 416, 436, 489, 975
Bsp119I TTCGAA 2 cut(s) 798, 805
Bsp1286I GDGCHC 1 cut(s) 452
Bsp143I GATC 8 cut(s) 7, 40, 440, 574, 837, 874, 940, 1144
Bsp1720I GCTNAGC 2 cut(s) 381, 626
BspACI CCGC 7 cut(s) 257, 282, 372, 427, 752, 768, 896
BspANI GGCC 9 cut(s) 65, 80, 256, 314, 337, 416, 436, 489, 975
BspCNI CTCAG 8 cut(s) 122, 355, 373, 466, 936, 973, 1090, 1120
BspLI GGNNCC 4 cut(s) 106, 338, 435, 712
BspMAI CTGCAG 2 cut(s) 562, 1042
BspPI GGATC 2 cut(s) 15, 869
BspT104I TTCGAA 2 cut(s) 798, 805
BspT107I GGYRCC 1 cut(s) 710
BsrDI GCAATG 2 cut(s) 712, 1077
BsrFI RCCGGY 2 cut(s) 485, 489
BsrI ACTGG 6 cut(s) 48, 340, 912, 976, 1196, 1368
BssAI RCCGGY 2 cut(s) 485, 489
BssECI CCNNGG 6 cut(s) 430, 460, 564, 824, 949, 1178
BssMI GATC 8 cut(s) 7, 40, 440, 574, 837, 874, 940, 1144
BssSI CACGAG 1 cut(s) 717
BssT1I CCWWGG 3 cut(s) 564, 949, 1178
Bst2BI CACGAG 1 cut(s) 717
Bst2UI CCWGG 1 cut(s) 825
Bst4CI ACNGT 4 cut(s) 37, 200, 309, 1288
BstAPI GCANNNNNTGC 2 cut(s) 761, 764
BstBI TTCGAA 2 cut(s) 798, 805
BstC8I GCNNGC 3 cut(s) 374, 378, 414
BstDEI CTNAG 9 cut(s) 109, 363, 381, 453, 626, 944, 960, 1098, 1128
BstEII GGTNACC 1 cut(s) 268
BstF5I GGATG 2 cut(s) 960, 1084
BstHHI GCGC 2 cut(s) 781, 1353
BstKTI GATC 8 cut(s) 10, 43, 443, 577, 840, 877, 943, 1147
BstMAI GTCTC 2 cut(s) 270, 963
BstMBI GATC 8 cut(s) 7, 40, 440, 574, 837, 874, 940, 1144
BstMCI CGRYCG 1 cut(s) 490
BstNI CCWGG 1 cut(s) 825
BstNSI RCATGY 1 cut(s) 689
BstPI GGTNACC 1 cut(s) 268
BstSCI CCNGG 5 cut(s) 416, 429, 459, 823, 1108
BstSFI CTRYAG 3 cut(s) 558, 1038, 1065
BstV2I GAAGAC 2 cut(s) 102, 144
BstX2I RGATCY 2 cut(s) 7, 440
BstXI CCANNNNNNTGG 2 cut(s) 73, 707
BstYI RGATCY 2 cut(s) 7, 440
BstZI CGGCCG 1 cut(s) 487
BsuRI GGCC 9 cut(s) 65, 80, 256, 314, 337, 416, 436, 489, 975
BtsCI GGATG 2 cut(s) 960, 1084
BtsI GCAGTG 2 cut(s) 546, 931
BtsIMutI CAGTG 3 cut(s) 347, 546, 931
Cac8I GCNNGC 3 cut(s) 374, 378, 414
CaiI CAGNNNCTG 3 cut(s) 346, 761, 764
CfoI GCGC 2 cut(s) 781, 1353
Cfr10I RCCGGY 2 cut(s) 485, 489
Cfr13I GGNCC 6 cut(s) 220, 336, 415, 434, 483, 791
Csp6I GTAC 3 cut(s) 457, 915, 1289
CviAII CATG 2 cut(s) 686, 1197
CviQI GTAC 3 cut(s) 457, 915, 1289
DdeI CTNAG 9 cut(s) 109, 363, 381, 453, 626, 944, 960, 1098, 1128
DpnI GATC 8 cut(s) 9, 42, 442, 576, 839, 876, 942, 1146
DpnII GATC 8 cut(s) 7, 40, 440, 574, 837, 874, 940, 1144
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 2 cut(s) 487, 973
EagI CGGCCG 1 cut(s) 487
EciI GGCGGA 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 450
EclXI CGGCCG 1 cut(s) 487
Eco130I CCWWGG 3 cut(s) 564, 949, 1178
Eco24I GRGCYC 1 cut(s) 452
Eco32I GATATC 1 cut(s) 613
Eco47I GGWCC 3 cut(s) 220, 483, 791
Eco52I CGGCCG 1 cut(s) 487
Eco53kI GAGCTC 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 939
Eco91I GGTNACC 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 450
EcoO109I RGGNCCY 1 cut(s) 336
EcoO65I GGTNACC 1 cut(s) 268
EcoRI GAATTC 1 cut(s) 677
EcoRII CCWGG 1 cut(s) 823
EcoRV GATATC 1 cut(s) 613
EcoT14I CCWWGG 3 cut(s) 564, 949, 1178
EcoT38I GRGCYC 1 cut(s) 452
ErhI CCWWGG 3 cut(s) 564, 949, 1178
Esp3I CGTCTC 1 cut(s) 270
FaeI CATG 2 cut(s) 689, 1200
FaqI GGGAC 4 cut(s) 215, 318, 825, 1062
FatI CATG 2 cut(s) 685, 1196
FauI CCCGC 1 cut(s) 365
FbaI TGATCA 2 cut(s) 40, 837
FokI GGATG 2 cut(s) 967, 1071
FriOI GRGCYC 1 cut(s) 452
FspBI CTAG 1 cut(s) 879
GlaI GCGC 2 cut(s) 780, 1352
GsaI CCCAGC 2 cut(s) 305, 1047
HaeIII GGCC 9 cut(s) 65, 80, 256, 314, 337, 416, 436, 489, 975
HhaI GCGC 2 cut(s) 781, 1353
Hin1II CATG 2 cut(s) 689, 1200
Hin6I GCGC 2 cut(s) 779, 1351
HinP1I GCGC 2 cut(s) 779, 1351
HinfI GANTC 8 cut(s) 98, 113, 140, 365, 465, 497, 1158, 1266
HphI GGTGA 2 cut(s) 280, 1167
Hpy188I TCNGA 6 cut(s) 92, 112, 447, 666, 945, 1099
Hpy188III TCNNGA 2 cut(s) 938, 1263
Hpy99I CGWCG 1 cut(s) 699
HpyAV CCTTC 5 cut(s) 846, 851, 884, 914, 975
HpyCH4III ACNGT 4 cut(s) 37, 200, 309, 1288
HpyCH4IV ACGT 1 cut(s) 470
HpyCH4V TGCA 9 cut(s) 131, 207, 397, 560, 584, 685, 1040, 1237, 1253
HpyF3I CTNAG 9 cut(s) 109, 363, 381, 453, 626, 944, 960, 1098, 1128
HpySE526I ACGT 1 cut(s) 470
Hsp92II CATG 2 cut(s) 689, 1200
HspAI GCGC 2 cut(s) 779, 1351
Ksp22I TGATCA 2 cut(s) 40, 837
Kzo9I GATC 8 cut(s) 7, 40, 440, 574, 837, 874, 940, 1144
LmnI GCTCC 3 cut(s) 93, 110, 447
LweI GCATC 5 cut(s) 595, 670, 898, 1093, 1265
MaeI CTAG 1 cut(s) 879
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 6 cut(s) 50, 268, 466, 862, 929, 1225
MalI GATC 8 cut(s) 9, 42, 442, 576, 839, 876, 942, 1146
MboI GATC 8 cut(s) 7, 40, 440, 574, 837, 874, 940, 1144
MboII GAAGA 7 cut(s) 107, 149, 196, 653, 686, 1164, 1266
MflI RGATCY 2 cut(s) 7, 440
MhlI GDGCHC 1 cut(s) 452
MlsI TGGCCA 1 cut(s) 975
MluNI TGGCCA 1 cut(s) 975
MlyI GAGTC 5 cut(s) 92, 107, 134, 374, 474
MmeI TCCRAC 1 cut(s) 174
Mox20I TGGCCA 1 cut(s) 975
MscI TGGCCA 1 cut(s) 975
MseI TTAA 4 cut(s) 12, 818, 1023, 1059
Msp20I TGGCCA 1 cut(s) 975
MspA1I CMGCKG 4 cut(s) 752, 761, 770, 1043
MspR9I CCNGG 5 cut(s) 418, 431, 461, 825, 1110
MvaI CCWGG 1 cut(s) 825
NciI CCSGG 4 cut(s) 418, 431, 461, 1110
NdeII GATC 8 cut(s) 7, 40, 440, 574, 837, 874, 940, 1144
NlaIII CATG 2 cut(s) 689, 1200
NlaIV GGNNCC 4 cut(s) 106, 338, 435, 712
NmeAIII GCCGAG 2 cut(s) 106, 462
NmuCI GTSAC 3 cut(s) 268, 466, 929
NspI RCATGY 1 cut(s) 689
NspV TTCGAA 2 cut(s) 798, 805
PcsI WCGNNNNNNNCGW 1 cut(s) 627
PfeI GAWTC 3 cut(s) 497, 1158, 1266
PleI GAGTC 5 cut(s) 92, 107, 134, 373, 473
PpsI GAGTC 5 cut(s) 92, 107, 134, 373, 473
PshBI ATTAAT 1 cut(s) 818
Psp124BI GAGCTC 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 823
PspEI GGTNACC 1 cut(s) 268
PspFI CCCAGC 2 cut(s) 301, 1043
PspGI CCWGG 1 cut(s) 823
PspN4I GGNNCC 4 cut(s) 106, 338, 435, 712
PspPI GGNCC 6 cut(s) 220, 336, 415, 434, 483, 791
PstI CTGCAG 2 cut(s) 562, 1042
PstNI CAGNNNCTG 3 cut(s) 346, 761, 764
PsuI RGATCY 2 cut(s) 7, 440
PvuII CAGCTG 2 cut(s) 761, 1043
RsaI GTAC 3 cut(s) 458, 916, 1290
RsaNI GTAC 3 cut(s) 457, 915, 1289
SacI GAGCTC 1 cut(s) 452
SaqAI TTAA 4 cut(s) 12, 818, 1023, 1059
Sau3AI GATC 8 cut(s) 7, 40, 440, 574, 837, 874, 940, 1144
Sau96I GGNCC 6 cut(s) 220, 336, 415, 434, 483, 791
ScaI AGTACT 1 cut(s) 916
SchI GAGTC 5 cut(s) 92, 107, 134, 374, 474
ScrFI CCNGG 5 cut(s) 418, 431, 461, 825, 1110
SduI GDGCHC 1 cut(s) 452
SfaNI GCATC 5 cut(s) 595, 670, 898, 1093, 1265
SfcI CTRYAG 3 cut(s) 558, 1038, 1065
SfuI TTCGAA 2 cut(s) 798, 805
SinI GGWCC 3 cut(s) 220, 483, 791
SsiI CCGC 7 cut(s) 257, 282, 372, 427, 752, 768, 896
SspMI CTAG 1 cut(s) 879
SstI GAGCTC 1 cut(s) 452
StyD4I CCNGG 5 cut(s) 416, 429, 459, 823, 1108
StyI CCWWGG 3 cut(s) 564, 949, 1178
TaaI ACNGT 4 cut(s) 37, 200, 309, 1288
TaiI ACGT 1 cut(s) 473
TaqI TCGA 5 cut(s) 332, 577, 595, 798, 805
TatI WGTACW 1 cut(s) 914
TauI GCSGC 4 cut(s) 259, 429, 755, 770
TfiI GAWTC 3 cut(s) 497, 1158, 1266
Tru1I TTAA 4 cut(s) 12, 818, 1023, 1059
Tru9I TTAA 4 cut(s) 12, 818, 1023, 1059
TscAI CASTG 3 cut(s) 347, 553, 931
TseFI GTSAC 3 cut(s) 268, 466, 929
Tsp45I GTSAC 3 cut(s) 268, 466, 929
TspDTI ATGAA 3 cut(s) 157, 903, 1220
TspGWI ACGGA 1 cut(s) 1224
TspRI CASTG 3 cut(s) 347, 553, 931
VpaK11BI GGWCC 3 cut(s) 220, 483, 791
VspI ATTAAT 1 cut(s) 818
XapI RAATTY 3 cut(s) 242, 322, 677
XceI RCATGY 1 cut(s) 689
XspI CTAG 1 cut(s) 879
ZrmI AGTACT 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.