Rh1CG302500

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
57666065 .. 57668985
2921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG302500.1

Sequence Viewer

Length: 1371 bp
ATGTTGGATCTTAATGTTGATGTCATTAGCTCTACCGTTGATCAATCCAGTTACGATGATAAGGCCAGAGCTTTGGAGGCCGAGAAGCTCCGAGAAGACTCCGGTTCCTCAGACTCCTCTGTGGTCAATGCAGAGGAAGACTCTTACTCCAACAACACCTCCCCATTCATCTTTGATATTTTGAAGAAAGACAAACACAGTCTTTGCAACAACAAAGAGGACCAGATTGTCCCCTCGCCTGAATTTGCTACAAGGCCGCTTTTTCCTGTGACCGGAGACGGCGGAGGAGGAGGAGAGCTGGGACTGTTGGCCTCGTCAAATTCGACATCGAGGCCTCAGTGGCTGAACTTGTCGTTTGCTGAGTCCGGCGGGCAGGCTGAGCTGAAAGTTGTGCAGCAGAAACAGCAGCAGGCCCGGAAAAGCCGCCGGGGGCCGAGATCTCGGAGCTCTCAGTACCGGGGAGTTACGTTTTACCGGAGGACCGGCCGGTGGGAATCGCACATATGGGATTGTGGGAAGCAAGTTTATTTAGGTGGATTTGACACTGCTCATTCTGCAGCCAAGGCGTATGATCGAGCTGCAATCAAGTTTCGAGGAGTTGATGCTGATATCAATTTCGTGCTAAGCGATTATGAGGAAGATTTGAAACAGATGAGGCATCTGAACAAAGAAGAATTCGTGCATGTGCTTCGTCGCCAAAGCAATGGAGCCTCTCGTGGGAACTCAAAATTGAGAGGCGTGGCGGCAGCGGCAGCAGCAGCCGCTGCTGTGCCTAAAATTGGTCCATTCGAAGTTCGAATGGGACAATTAATTCCTGGGAATAAGTTGATCAAATGTAATGGAAGGGAAGGAGTTACCAACTTTGATCCTAGTATTTATGAAGGGGCGGTAGTAGTAGATGCCAGTACTGAAGGCAGTGGTCACAATCTTGATCTGAGCCTTGGGATTTCTCAGCCTTCTACTGGCCAAAAGAGGAAAGCCTTTGAAATACATACCAAAGAGAAGCCAATGGTTAATGGCTCTGCTTCTGCAGCTGGGGGACAACCACTTAATGCTACAGAAATGCTATCCAAGCATCCTGCCTTGTATTCTGAGATATATCCGGGTTTCTTACATAAAACTGAGGAAATGGCAACAGATTATCATAAGAGAATCCAAGCGGTTTCTTCACCGAGGTTTTCAAACTGGGCATGGCAAATGAACGGAAACAACAACAATGTTACTCCAATGCAAGTGTTCTCTATTGCAGCATCATCAGGATTCTCATCTTCCATAGCTACCGTACCTCCATCAGCCACTAACCAGCTTCCACCAATTCTCCAAGACAATTCTACTTACAATCTGCGCCACCCTTTTCCCACCAGTTTGTAA

Protein Analysis

456

Amino Acids

49.76

Weight (kDa)

8.26

Isoelectric Point (pI)

51.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 151 - 199 1.2e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AciI CCGC 9 cut(s) 257, 282, 369, 424, 743, 749, 762, 887, 1160
AclWI GGATC 2 cut(s) 15, 860
AcoI YGGCCR 2 cut(s) 484, 964
AcsI RAATTY 3 cut(s) 242, 319, 674
AcuI CTGAAG 1 cut(s) 930
AfaI GTAC 3 cut(s) 455, 907, 1284
AfiI CCNNNNNNNGG 5 cut(s) 272, 489, 717, 779, 962
AgsI TTSAA 4 cut(s) 184, 646, 986, 1182
AjnI CCWGG 1 cut(s) 814
Alw21I GWGCWC 1 cut(s) 449
Alw26I GTCTC 1 cut(s) 270
AlwI GGATC 2 cut(s) 15, 860
AlwNI CAGNNNCTG 2 cut(s) 343, 764
AoxI GGCC 9 cut(s) 63, 78, 254, 309, 332, 411, 431, 484, 964
ApoI RAATTY 3 cut(s) 242, 319, 674
AseI ATTAAT 1 cut(s) 809
AspLEI GCGC 1 cut(s) 1347
AspS9I GGNCC 5 cut(s) 220, 412, 431, 480, 782
AsuC2I CCSGG 4 cut(s) 415, 428, 458, 1104
AsuHPI GGTGA 1 cut(s) 1161
AsuII TTCGAA 2 cut(s) 789, 796
AvaII GGWCC 3 cut(s) 220, 480, 782
BalI TGGCCA 1 cut(s) 966
BanII GRGCYC 1 cut(s) 449
BauI CACGAG 1 cut(s) 714
BbsI GAAGAC 2 cut(s) 102, 144
Bbv12I GWGCWC 1 cut(s) 449
BccI CCATC 1 cut(s) 1297
BceAI ACGGC 1 cut(s) 295
BcgI CGANNNNNNTGC 2 cut(s) 671, 705
BciT130I CCWGG 1 cut(s) 816
BclI TGATCA 2 cut(s) 40, 828
BcnI CCSGG 4 cut(s) 415, 428, 458, 1104
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 1 cut(s) 870
BfmI CTRYAG 3 cut(s) 555, 1029, 1056
BglI GCCNNNNNGGC 1 cut(s) 340
BglII AGATCT 1 cut(s) 437
BlpI GCTNAGC 2 cut(s) 378, 623
BmcAI AGTACT 1 cut(s) 907
Bme1390I CCNGG 5 cut(s) 415, 428, 458, 816, 1104
Bme18I GGWCC 3 cut(s) 220, 480, 782
BmgT120I GGNCC 5 cut(s) 220, 412, 431, 480, 782
BmiI GGNNCC 3 cut(s) 106, 432, 709
BmrFI CCNGG 5 cut(s) 415, 428, 458, 816, 1104
BmrI ACTGGG 1 cut(s) 1195
BmsI GCATC 5 cut(s) 592, 667, 889, 1084, 1259
BmuI ACTGGG 1 cut(s) 1195
BpiI GAAGAC 2 cut(s) 102, 144
BplI GAGNNNNNCTC 2 cut(s) 125, 157
Bpu1102I GCTNAGC 2 cut(s) 378, 623
Bpu14I TTCGAA 2 cut(s) 789, 796
BpuMI CCSGG 4 cut(s) 415, 428, 458, 1104
BsaBI GATNNNNATC 1 cut(s) 1264
BsaJI CCNNGG 6 cut(s) 427, 457, 561, 815, 940, 1172
BsaWI WCCGGW 3 cut(s) 101, 272, 474
BsaXI ACNNNNNCTCC 8 cut(s) 131, 143, 161, 173, 1270, 1300, 1302, 1332
Bsc4I CCNNNNNNNGG 5 cut(s) 272, 489, 717, 779, 962
Bse118I RCCGGY 2 cut(s) 482, 486
Bse1I ACTGG 5 cut(s) 48, 903, 967, 1190, 1362
Bse3DI GCAATG 1 cut(s) 709
Bse8I GATNNNNATC 1 cut(s) 1264
BseBI CCWGG 1 cut(s) 816
BseDI CCNNGG 6 cut(s) 427, 457, 561, 815, 940, 1172
BseGI GGATG 1 cut(s) 1075
BseJI GATNNNNATC 1 cut(s) 1264
BseLI CCNNNNNNNGG 5 cut(s) 272, 489, 717, 779, 962
BseMI GCAATG 1 cut(s) 709
BseMII CTCAG 9 cut(s) 123, 350, 351, 369, 464, 926, 965, 1083, 1113
BseNI ACTGG 5 cut(s) 48, 903, 967, 1190, 1362
BseRI GAGGAG 5 cut(s) 106, 300, 303, 306, 609
BseX3I CGGCCG 1 cut(s) 484
BseYI CCCAGC 2 cut(s) 298, 1034
BsgI GTGCAG 1 cut(s) 413
Bsh1285I CGRYCG 1 cut(s) 487
BshFI GGCC 9 cut(s) 65, 80, 256, 311, 334, 413, 433, 486, 966
BsiEI CGRYCG 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 449
BslFI GGGAC 4 cut(s) 215, 315, 816, 1053
BslI CCNNNNNNNGG 5 cut(s) 272, 489, 717, 779, 962
BsmAI GTCTC 1 cut(s) 270
BsmBI CGTCTC 1 cut(s) 270
BsmFI GGGAC 4 cut(s) 215, 315, 816, 1053
BsnI GGCC 9 cut(s) 65, 80, 256, 311, 334, 413, 433, 486, 966
Bsp119I TTCGAA 2 cut(s) 789, 796
Bsp1286I GDGCHC 1 cut(s) 449
Bsp143I GATC 7 cut(s) 7, 40, 437, 571, 828, 865, 931
Bsp1720I GCTNAGC 2 cut(s) 378, 623
BspACI CCGC 9 cut(s) 257, 282, 369, 424, 743, 749, 762, 887, 1160
BspANI GGCC 9 cut(s) 65, 80, 256, 311, 334, 413, 433, 486, 966
BspCNI CTCAG 9 cut(s) 122, 349, 352, 370, 463, 927, 964, 1084, 1114
BspLI GGNNCC 3 cut(s) 106, 432, 709
BspMAI CTGCAG 2 cut(s) 559, 1033
BspPI GGATC 2 cut(s) 15, 860
BspT104I TTCGAA 2 cut(s) 789, 796
BsrDI GCAATG 1 cut(s) 709
BsrFI RCCGGY 2 cut(s) 482, 486
BsrI ACTGG 5 cut(s) 48, 903, 967, 1190, 1362
BssAI RCCGGY 2 cut(s) 482, 486
BssECI CCNNGG 6 cut(s) 427, 457, 561, 815, 940, 1172
BssMI GATC 7 cut(s) 7, 40, 437, 571, 828, 865, 931
BssSI CACGAG 1 cut(s) 714
BssT1I CCWWGG 2 cut(s) 561, 940
Bst2BI CACGAG 1 cut(s) 714
Bst2UI CCWGG 1 cut(s) 816
Bst4CI ACNGT 4 cut(s) 37, 200, 306, 1282
BstAPI GCANNNNNTGC 1 cut(s) 764
BstBI TTCGAA 2 cut(s) 789, 796
BstC8I GCNNGC 3 cut(s) 371, 375, 411
BstF5I GGATG 1 cut(s) 1075
BstHHI GCGC 1 cut(s) 1347
BstKTI GATC 7 cut(s) 10, 43, 440, 574, 831, 868, 934
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 7 cut(s) 7, 40, 437, 571, 828, 865, 931
BstMCI CGRYCG 1 cut(s) 487
BstNI CCWGG 1 cut(s) 816
BstNSI RCATGY 1 cut(s) 686
BstSCI CCNGG 5 cut(s) 413, 426, 456, 814, 1102
BstSFI CTRYAG 3 cut(s) 555, 1029, 1056
BstV2I GAAGAC 2 cut(s) 102, 144
BstX2I RGATCY 2 cut(s) 7, 437
BstXI CCANNNNNNTGG 2 cut(s) 73, 704
BstYI RGATCY 2 cut(s) 7, 437
BstZI CGGCCG 1 cut(s) 484
BsuRI GGCC 9 cut(s) 65, 80, 256, 311, 334, 413, 433, 486, 966
BtsCI GGATG 1 cut(s) 1075
BtsI GCAGTG 2 cut(s) 543, 922
BtsIMutI CAGTG 3 cut(s) 344, 543, 922
Cac8I GCNNGC 3 cut(s) 371, 375, 411
CaiI CAGNNNCTG 2 cut(s) 343, 764
CfoI GCGC 1 cut(s) 1347
Cfr10I RCCGGY 2 cut(s) 482, 486
Cfr13I GGNCC 5 cut(s) 220, 412, 431, 480, 782
Csp6I GTAC 3 cut(s) 454, 906, 1283
CviAII CATG 2 cut(s) 683, 1191
CviQI GTAC 3 cut(s) 454, 906, 1283
DpnI GATC 7 cut(s) 9, 42, 439, 573, 830, 867, 933
DpnII GATC 7 cut(s) 7, 40, 437, 571, 828, 865, 931
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 2 cut(s) 484, 964
EagI CGGCCG 1 cut(s) 484
EciI GGCGGA 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 447
EclXI CGGCCG 1 cut(s) 484
Eco130I CCWWGG 2 cut(s) 561, 940
Eco147I AGGCCT 1 cut(s) 334
Eco24I GRGCYC 1 cut(s) 449
Eco32I GATATC 1 cut(s) 610
Eco47I GGWCC 3 cut(s) 220, 480, 782
Eco52I CGGCCG 1 cut(s) 484
Eco53kI GAGCTC 1 cut(s) 447
Eco57I CTGAAG 1 cut(s) 930
EcoICRI GAGCTC 1 cut(s) 447
EcoRI GAATTC 1 cut(s) 674
EcoRII CCWGG 1 cut(s) 814
EcoRV GATATC 1 cut(s) 610
EcoT14I CCWWGG 2 cut(s) 561, 940
EcoT38I GRGCYC 1 cut(s) 449
ErhI CCWWGG 2 cut(s) 561, 940
Esp3I CGTCTC 1 cut(s) 270
FaeI CATG 2 cut(s) 686, 1194
FaqI GGGAC 4 cut(s) 215, 315, 816, 1053
FatI CATG 2 cut(s) 682, 1190
FauI CCCGC 1 cut(s) 362
FauNDI CATATG 1 cut(s) 503
FbaI TGATCA 2 cut(s) 40, 828
FokI GGATG 1 cut(s) 1062
FriOI GRGCYC 1 cut(s) 449
FspBI CTAG 1 cut(s) 870
GlaI GCGC 1 cut(s) 1346
GsaI CCCAGC 2 cut(s) 302, 1038
HaeIII GGCC 9 cut(s) 65, 80, 256, 311, 334, 413, 433, 486, 966
HhaI GCGC 1 cut(s) 1347
Hin1II CATG 2 cut(s) 686, 1194
Hin6I GCGC 1 cut(s) 1345
HinP1I GCGC 1 cut(s) 1345
HinfI GANTC 7 cut(s) 98, 113, 140, 362, 494, 1152, 1260
HphI GGTGA 1 cut(s) 1161
Hpy188I TCNGA 6 cut(s) 92, 112, 444, 663, 936, 1093
Hpy188III TCNNGA 2 cut(s) 929, 1257
Hpy99I CGWCG 1 cut(s) 696
HpyAV CCTTC 5 cut(s) 837, 842, 875, 905, 966
HpyCH4III ACNGT 4 cut(s) 37, 200, 306, 1282
HpyCH4IV ACGT 1 cut(s) 467
HpyCH4V TGCA 9 cut(s) 131, 207, 394, 557, 581, 682, 1031, 1231, 1247
HpySE526I ACGT 1 cut(s) 467
Hsp92II CATG 2 cut(s) 686, 1194
HspAI GCGC 1 cut(s) 1345
Ksp22I TGATCA 2 cut(s) 40, 828
Kzo9I GATC 7 cut(s) 7, 40, 437, 571, 828, 865, 931
LmnI GCTCC 3 cut(s) 93, 444, 707
LweI GCATC 5 cut(s) 592, 667, 889, 1084, 1259
MaeI CTAG 1 cut(s) 870
MaeII ACGT 1 cut(s) 467
MaeIII GTNAC 6 cut(s) 50, 268, 463, 853, 920, 1219
MalI GATC 7 cut(s) 9, 42, 439, 573, 830, 867, 933
MboI GATC 7 cut(s) 7, 40, 437, 571, 828, 865, 931
MboII GAAGA 7 cut(s) 107, 149, 196, 650, 683, 1158, 1260
MflI RGATCY 2 cut(s) 7, 437
MhlI GDGCHC 1 cut(s) 449
MlsI TGGCCA 1 cut(s) 966
MluNI TGGCCA 1 cut(s) 966
MlyI GAGTC 4 cut(s) 92, 107, 134, 371
MmeI TCCRAC 1 cut(s) 174
Mox20I TGGCCA 1 cut(s) 966
MscI TGGCCA 1 cut(s) 966
MseI TTAA 4 cut(s) 12, 809, 1014, 1050
Msp20I TGGCCA 1 cut(s) 966
MspA1I CMGCKG 3 cut(s) 749, 764, 1034
MspR9I CCNGG 5 cut(s) 415, 428, 458, 816, 1104
MvaI CCWGG 1 cut(s) 816
NciI CCSGG 4 cut(s) 415, 428, 458, 1104
NdeI CATATG 1 cut(s) 503
NdeII GATC 7 cut(s) 7, 40, 437, 571, 828, 865, 931
NlaIII CATG 2 cut(s) 686, 1194
NlaIV GGNNCC 3 cut(s) 106, 432, 709
NmeAIII GCCGAG 2 cut(s) 106, 459
NmuCI GTSAC 2 cut(s) 268, 920
NspI RCATGY 1 cut(s) 686
NspV TTCGAA 2 cut(s) 789, 796
PceI AGGCCT 1 cut(s) 334
PcsI WCGNNNNNNNCGW 2 cut(s) 320, 624
PfeI GAWTC 3 cut(s) 494, 1152, 1260
PleI GAGTC 4 cut(s) 92, 107, 134, 370
PpsI GAGTC 4 cut(s) 92, 107, 134, 370
PshBI ATTAAT 1 cut(s) 809
Psp124BI GAGCTC 1 cut(s) 449
Psp6I CCWGG 1 cut(s) 814
PspFI CCCAGC 2 cut(s) 298, 1034
PspGI CCWGG 1 cut(s) 814
PspN4I GGNNCC 3 cut(s) 106, 432, 709
PspPI GGNCC 5 cut(s) 220, 412, 431, 480, 782
PstI CTGCAG 2 cut(s) 559, 1033
PstNI CAGNNNCTG 2 cut(s) 343, 764
PsuI RGATCY 2 cut(s) 7, 437
PvuII CAGCTG 1 cut(s) 1034
RsaI GTAC 3 cut(s) 455, 907, 1284
RsaNI GTAC 3 cut(s) 454, 906, 1283
SacI GAGCTC 1 cut(s) 449
SaqAI TTAA 4 cut(s) 12, 809, 1014, 1050
Sau3AI GATC 7 cut(s) 7, 40, 437, 571, 828, 865, 931
Sau96I GGNCC 5 cut(s) 220, 412, 431, 480, 782
ScaI AGTACT 1 cut(s) 907
SchI GAGTC 4 cut(s) 92, 107, 134, 371
ScrFI CCNGG 5 cut(s) 415, 428, 458, 816, 1104
SduI GDGCHC 1 cut(s) 449
SfaNI GCATC 5 cut(s) 592, 667, 889, 1084, 1259
SfcI CTRYAG 3 cut(s) 555, 1029, 1056
SfuI TTCGAA 2 cut(s) 789, 796
SinI GGWCC 3 cut(s) 220, 480, 782
SseBI AGGCCT 1 cut(s) 334
SsiI CCGC 9 cut(s) 257, 282, 369, 424, 743, 749, 762, 887, 1160
SspMI CTAG 1 cut(s) 870
SstI GAGCTC 1 cut(s) 449
StuI AGGCCT 1 cut(s) 334
StyD4I CCNGG 5 cut(s) 413, 426, 456, 814, 1102
StyI CCWWGG 2 cut(s) 561, 940
TaaI ACNGT 4 cut(s) 37, 200, 306, 1282
TaiI ACGT 1 cut(s) 470
TaqI TCGA 6 cut(s) 323, 329, 574, 592, 789, 796
TatI WGTACW 1 cut(s) 905
TauI GCSGC 5 cut(s) 259, 426, 746, 752, 764
TfiI GAWTC 3 cut(s) 494, 1152, 1260
Tru1I TTAA 4 cut(s) 12, 809, 1014, 1050
Tru9I TTAA 4 cut(s) 12, 809, 1014, 1050
TscAI CASTG 3 cut(s) 344, 550, 922
TseFI GTSAC 2 cut(s) 268, 920
Tsp45I GTSAC 2 cut(s) 268, 920
TspDTI ATGAA 3 cut(s) 157, 894, 1214
TspGWI ACGGA 1 cut(s) 1218
TspRI CASTG 3 cut(s) 344, 550, 922
VpaK11BI GGWCC 3 cut(s) 220, 480, 782
VspI ATTAAT 1 cut(s) 809
XapI RAATTY 3 cut(s) 242, 319, 674
XceI RCATGY 1 cut(s) 686
XspI CTAG 1 cut(s) 870
ZrmI AGTACT 1 cut(s) 907
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.