Rroxscaffold_4G00292420

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
12739911 .. 12742998
3088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00292420.1

Sequence Viewer

Length: 1257 bp
ATGTTGGATCTTAATGTTGATGTCATTAGCTCTACCGTTGATCAATCCAGTTACGATGATAAGGCCAGAGCTTTGGAGGCCGAGAAGCTCCGAGAAGACTCCGGCTCCTCAGACTCCTCTGTGGTCAATGCAGAGGAAGACTCTTATTCCAACAACACCTCCCCATTCATCTTTGATATTTTGAAGAAAGACAAACACGGTCTTTGCAACAACAAAGAGGACCAGATTGTCCCCTCGCCTGAATTTGCTACAAGGCCGCTTTTTCCGGCCGAGCTGAAAGTTGTGCAGCAGAAACAGCAGCAGGCCCGGAAAAGCCGCCGGGGGCCGAGATCTCGGAGCTCTCAGTACCGGGGAGTTACGTTTTACCGGAGGACCGGCCGGTGGGAATCGCATATATGGGATTGTGGGAAGCAAGTTTATTTAGGTGGATTTGACACTGCTCATTCTGCAGCCAAGGCGTATGATCGAGCTGCAATCAAGTTTCGAGGAGTTGATGCTGATATCAATTTCGTGCTAAGCGATTATGAGGAAGATTTGAAACAGATGAGGCATCTGAACAAAGAAGAATTCGTGCACGTACTTCGTCGCCAAAGCAATGGAGCCTCTCGTGGGAACTCAAAATTGAGAGGCGCAGCGGCGGCAGCAGCTGCTGCTGTGCCCAAAATTGGTCCATTCGAAGTTCGAATGGGAAAATTAATTCCTGGGAATAAGTTGATCAAATGTAATGGAAGGGAAGGAGTTACCAATTTTGATCCTAGTATTTATGAAGGGGCGGTAGTAGTAGATGCCAGTGCTGAAGGCAGTGGTCACAATCTTGACCTGAGCCTTGGGATTTCTCAGCCTTCTACTGGCCAAAAGAGGAAAGCCTTTGAAATACTTACCAAAGAGAAGCCAATGGTTAATGGCTCTGCTTCTGCAGCTGGGGGACAACCACTTAATGCTATAGCAATGCTATCCAAGCATCCTGCCTTGTATTCTGAGATATATCCGGGTTTCTTACATAAAACTGAGGAAATGGCGACAGATCATCATAAGAGAATCCAAGCGGTTTCTTCACCAAGGTTTTCAAACTGGGCATGGCAAATGAACGGAAACAACAACAATGTCACTCCAATGCAAGTGTTCTCTATTGCAGCATCATCAGGATTCTCATCTTCCATAGCTACCGTACCTCCATCAGCCACTAACCAGCTTCCACCAATTCTCCAAGACAATTCTACTTACAATCTGCGCCACCCTTTTCCCACCAGTTTGTAA

Protein Analysis

418

Amino Acids

45.95

Weight (kDa)

9.01

Isoelectric Point (pI)

50.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 115 - 163 1e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AciI CCGC 6 cut(s) 257, 316, 635, 638, 773, 1046
AclWI GGATC 2 cut(s) 15, 746
AcoI YGGCCR 3 cut(s) 267, 376, 850
AcsI RAATTY 2 cut(s) 242, 566
AcuI CTGAAG 1 cut(s) 816
AfaI GTAC 3 cut(s) 347, 579, 1170
AfiI CCNNNNNNNGG 4 cut(s) 381, 609, 665, 848
AgsI TTSAA 4 cut(s) 184, 538, 872, 1068
AjnI CCWGG 1 cut(s) 700
Alw21I GWGCWC 2 cut(s) 341, 576
Alw44I GTGCAC 1 cut(s) 572
AlwI GGATC 2 cut(s) 15, 746
AlwNI CAGNNNCTG 2 cut(s) 647, 650
AoxI GGCC 8 cut(s) 63, 78, 254, 267, 303, 323, 376, 850
ApaLI GTGCAC 1 cut(s) 572
ApoI RAATTY 2 cut(s) 242, 566
AseI ATTAAT 1 cut(s) 695
AspLEI GCGC 2 cut(s) 632, 1233
AspS9I GGNCC 5 cut(s) 220, 304, 323, 372, 668
AsuC2I CCSGG 4 cut(s) 307, 320, 350, 990
AsuHPI GGTGA 1 cut(s) 1047
AsuII TTCGAA 2 cut(s) 675, 682
AvaII GGWCC 3 cut(s) 220, 372, 668
BaeGI GKGCMC 2 cut(s) 576, 660
BalI TGGCCA 1 cut(s) 852
BanII GRGCYC 1 cut(s) 341
BauI CACGAG 1 cut(s) 606
BbsI GAAGAC 2 cut(s) 102, 144
Bbv12I GWGCWC 2 cut(s) 341, 576
BccI CCATC 1 cut(s) 1183
BcgI CGANNNNNNTGC 2 cut(s) 563, 597
BciT130I CCWGG 1 cut(s) 702
BclI TGATCA 2 cut(s) 40, 714
BcnI CCSGG 4 cut(s) 307, 320, 350, 990
BfaI CTAG 1 cut(s) 756
BfmI CTRYAG 3 cut(s) 447, 915, 942
BglII AGATCT 1 cut(s) 329
BlpI GCTNAGC 1 cut(s) 515
Bme1390I CCNGG 5 cut(s) 307, 320, 350, 702, 990
Bme18I GGWCC 3 cut(s) 220, 372, 668
BmgT120I GGNCC 5 cut(s) 220, 304, 323, 372, 668
BmiI GGNNCC 3 cut(s) 106, 324, 601
BmrFI CCNGG 5 cut(s) 307, 320, 350, 702, 990
BmrI ACTGGG 1 cut(s) 1081
BmsI GCATC 5 cut(s) 484, 559, 775, 970, 1145
BmuI ACTGGG 1 cut(s) 1081
BpiI GAAGAC 2 cut(s) 102, 144
BplI GAGNNNNNCTC 2 cut(s) 125, 157
Bpu10I CCTNAGC 1 cut(s) 821
Bpu1102I GCTNAGC 1 cut(s) 515
Bpu14I TTCGAA 2 cut(s) 675, 682
BpuMI CCSGG 4 cut(s) 307, 320, 350, 990
BsaAI YACGTR 1 cut(s) 577
BsaBI GATNNNNATC 1 cut(s) 1150
BsaJI CCNNGG 6 cut(s) 319, 349, 453, 701, 826, 1058
BsaWI WCCGGW 1 cut(s) 366
BsaXI ACNNNNNCTCC 8 cut(s) 89, 119, 143, 173, 1156, 1186, 1188, 1218
Bsc4I CCNNNNNNNGG 4 cut(s) 381, 609, 665, 848
Bse118I RCCGGY 2 cut(s) 374, 378
Bse1I ACTGG 5 cut(s) 48, 789, 853, 1076, 1248
Bse3DI GCAATG 2 cut(s) 601, 954
Bse8I GATNNNNATC 1 cut(s) 1150
BseBI CCWGG 1 cut(s) 702
BseDI CCNNGG 6 cut(s) 319, 349, 453, 701, 826, 1058
BseGI GGATG 1 cut(s) 961
BseJI GATNNNNATC 1 cut(s) 1150
BseLI CCNNNNNNNGG 4 cut(s) 381, 609, 665, 848
BseMI GCAATG 2 cut(s) 601, 954
BseMII CTCAG 6 cut(s) 123, 356, 812, 851, 969, 999
BseNI ACTGG 5 cut(s) 48, 789, 853, 1076, 1248
BseRI GAGGAG 3 cut(s) 97, 106, 501
BseSI GKGCMC 2 cut(s) 576, 660
BseX3I CGGCCG 2 cut(s) 267, 376
BseYI CCCAGC 1 cut(s) 920
BsgI GTGCAG 1 cut(s) 305
Bsh1285I CGRYCG 2 cut(s) 270, 379
BshFI GGCC 8 cut(s) 65, 80, 256, 269, 305, 325, 378, 852
BsiEI CGRYCG 2 cut(s) 270, 379
BsiHKAI GWGCWC 2 cut(s) 341, 576
BsiSI CCGG 9 cut(s) 102, 266, 307, 319, 349, 367, 375, 379, 989
BslFI GGGAC 2 cut(s) 215, 939
BslI CCNNNNNNNGG 4 cut(s) 381, 609, 665, 848
BsmFI GGGAC 2 cut(s) 215, 939
BsnI GGCC 8 cut(s) 65, 80, 256, 269, 305, 325, 378, 852
Bsp119I TTCGAA 2 cut(s) 675, 682
Bsp1286I GDGCHC 3 cut(s) 341, 576, 660
Bsp143I GATC 7 cut(s) 7, 40, 329, 463, 714, 751, 1024
Bsp1720I GCTNAGC 1 cut(s) 515
BspACI CCGC 6 cut(s) 257, 316, 635, 638, 773, 1046
BspANI GGCC 8 cut(s) 65, 80, 256, 269, 305, 325, 378, 852
BspCNI CTCAG 6 cut(s) 122, 355, 813, 850, 970, 1000
BspLI GGNNCC 3 cut(s) 106, 324, 601
BspMAI CTGCAG 2 cut(s) 451, 919
BspPI GGATC 2 cut(s) 15, 746
BspT104I TTCGAA 2 cut(s) 675, 682
BsrDI GCAATG 2 cut(s) 601, 954
BsrFI RCCGGY 2 cut(s) 374, 378
BsrI ACTGG 5 cut(s) 48, 789, 853, 1076, 1248
BssAI RCCGGY 2 cut(s) 374, 378
BssECI CCNNGG 6 cut(s) 319, 349, 453, 701, 826, 1058
BssMI GATC 7 cut(s) 7, 40, 329, 463, 714, 751, 1024
BssSI CACGAG 1 cut(s) 606
BssT1I CCWWGG 3 cut(s) 453, 826, 1058
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 1 cut(s) 702
Bst4CI ACNGT 3 cut(s) 37, 200, 1168
BstAPI GCANNNNNTGC 2 cut(s) 647, 650
BstBAI YACGTR 1 cut(s) 577
BstBI TTCGAA 2 cut(s) 675, 682
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 7 cut(s) 109, 342, 515, 821, 837, 978, 1008
BstF5I GGATG 1 cut(s) 961
BstHHI GCGC 2 cut(s) 632, 1233
BstKTI GATC 7 cut(s) 10, 43, 332, 466, 717, 754, 1027
BstMBI GATC 7 cut(s) 7, 40, 329, 463, 714, 751, 1024
BstMCI CGRYCG 2 cut(s) 270, 379
BstNI CCWGG 1 cut(s) 702
BstSCI CCNGG 5 cut(s) 305, 318, 348, 700, 988
BstSFI CTRYAG 3 cut(s) 447, 915, 942
BstSLI GKGCMC 2 cut(s) 576, 660
BstV2I GAAGAC 2 cut(s) 102, 144
BstX2I RGATCY 2 cut(s) 7, 329
BstXI CCANNNNNNTGG 2 cut(s) 73, 596
BstYI RGATCY 2 cut(s) 7, 329
BstZI CGGCCG 2 cut(s) 267, 376
BsuRI GGCC 8 cut(s) 65, 80, 256, 269, 305, 325, 378, 852
BtsCI GGATG 1 cut(s) 961
BtsI GCAGTG 2 cut(s) 435, 808
BtsIMutI CAGTG 3 cut(s) 435, 796, 808
Cac8I GCNNGC 1 cut(s) 303
CaiI CAGNNNCTG 2 cut(s) 647, 650
CfoI GCGC 2 cut(s) 632, 1233
Cfr10I RCCGGY 2 cut(s) 374, 378
Cfr13I GGNCC 5 cut(s) 220, 304, 323, 372, 668
Csp6I GTAC 3 cut(s) 346, 578, 1169
CviAII CATG 1 cut(s) 1077
CviQI GTAC 3 cut(s) 346, 578, 1169
DdeI CTNAG 7 cut(s) 109, 342, 515, 821, 837, 978, 1008
DpnI GATC 7 cut(s) 9, 42, 331, 465, 716, 753, 1026
DpnII GATC 7 cut(s) 7, 40, 329, 463, 714, 751, 1024
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 3 cut(s) 267, 376, 850
EagI CGGCCG 2 cut(s) 267, 376
Ecl136II GAGCTC 1 cut(s) 339
EclXI CGGCCG 2 cut(s) 267, 376
Eco130I CCWWGG 3 cut(s) 453, 826, 1058
Eco24I GRGCYC 1 cut(s) 341
Eco32I GATATC 1 cut(s) 502
Eco47I GGWCC 3 cut(s) 220, 372, 668
Eco52I CGGCCG 2 cut(s) 267, 376
Eco53kI GAGCTC 1 cut(s) 339
Eco57I CTGAAG 1 cut(s) 816
EcoICRI GAGCTC 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 566
EcoRII CCWGG 1 cut(s) 700
EcoRV GATATC 1 cut(s) 502
EcoT14I CCWWGG 3 cut(s) 453, 826, 1058
EcoT38I GRGCYC 1 cut(s) 341
ErhI CCWWGG 3 cut(s) 453, 826, 1058
FaeI CATG 1 cut(s) 1080
FaqI GGGAC 2 cut(s) 215, 939
FatI CATG 1 cut(s) 1076
FbaI TGATCA 2 cut(s) 40, 714
FokI GGATG 1 cut(s) 948
FriOI GRGCYC 1 cut(s) 341
FspBI CTAG 1 cut(s) 756
GlaI GCGC 2 cut(s) 631, 1232
GsaI CCCAGC 1 cut(s) 924
HaeIII GGCC 8 cut(s) 65, 80, 256, 269, 305, 325, 378, 852
HapII CCGG 9 cut(s) 102, 266, 307, 319, 349, 367, 375, 379, 989
HhaI GCGC 2 cut(s) 632, 1233
Hin1II CATG 1 cut(s) 1080
Hin6I GCGC 2 cut(s) 630, 1231
HinP1I GCGC 2 cut(s) 630, 1231
HinfI GANTC 6 cut(s) 98, 113, 140, 386, 1038, 1146
HpaII CCGG 9 cut(s) 102, 266, 307, 319, 349, 367, 375, 379, 989
HphI GGTGA 1 cut(s) 1047
Hpy166II GTNNAC 1 cut(s) 574
Hpy188I TCNGA 5 cut(s) 92, 112, 336, 555, 979
Hpy188III TCNNGA 2 cut(s) 815, 1143
Hpy8I GTNNAC 1 cut(s) 574
Hpy99I CGWCG 1 cut(s) 588
HpyAV CCTTC 5 cut(s) 723, 728, 761, 791, 852
HpyCH4III ACNGT 3 cut(s) 37, 200, 1168
HpyCH4IV ACGT 2 cut(s) 359, 576
HpyCH4V TGCA 9 cut(s) 131, 207, 286, 449, 473, 574, 917, 1117, 1133
HpyF3I CTNAG 7 cut(s) 109, 342, 515, 821, 837, 978, 1008
HpySE526I ACGT 2 cut(s) 359, 576
Hsp92II CATG 1 cut(s) 1080
HspAI GCGC 2 cut(s) 630, 1231
Ksp22I TGATCA 2 cut(s) 40, 714
Kzo9I GATC 7 cut(s) 7, 40, 329, 463, 714, 751, 1024
LmnI GCTCC 4 cut(s) 93, 110, 336, 599
LweI GCATC 5 cut(s) 484, 559, 775, 970, 1145
MaeI CTAG 1 cut(s) 756
MaeII ACGT 2 cut(s) 359, 576
MaeIII GTNAC 5 cut(s) 50, 355, 739, 806, 1105
MalI GATC 7 cut(s) 9, 42, 331, 465, 716, 753, 1026
MboI GATC 7 cut(s) 7, 40, 329, 463, 714, 751, 1024
MboII GAAGA 7 cut(s) 107, 149, 196, 542, 575, 1044, 1146
MflI RGATCY 2 cut(s) 7, 329
MhlI GDGCHC 3 cut(s) 341, 576, 660
MlsI TGGCCA 1 cut(s) 852
MluNI TGGCCA 1 cut(s) 852
MlyI GAGTC 3 cut(s) 92, 107, 134
MmeI TCCRAC 1 cut(s) 174
Mox20I TGGCCA 1 cut(s) 852
MscI TGGCCA 1 cut(s) 852
MseI TTAA 4 cut(s) 12, 695, 900, 936
MslI CAYNNNNRTG 1 cut(s) 1112
Msp20I TGGCCA 1 cut(s) 852
MspA1I CMGCKG 3 cut(s) 635, 647, 920
MspI CCGG 9 cut(s) 102, 266, 307, 319, 349, 367, 375, 379, 989
MspR9I CCNGG 5 cut(s) 307, 320, 350, 702, 990
MvaI CCWGG 1 cut(s) 702
NciI CCSGG 4 cut(s) 307, 320, 350, 990
NdeII GATC 7 cut(s) 7, 40, 329, 463, 714, 751, 1024
NlaIII CATG 1 cut(s) 1080
NlaIV GGNNCC 3 cut(s) 106, 324, 601
NmeAIII GCCGAG 3 cut(s) 106, 295, 351
NmuCI GTSAC 2 cut(s) 806, 1105
NspV TTCGAA 2 cut(s) 675, 682
PcsI WCGNNNNNNNCGW 1 cut(s) 516
PfeI GAWTC 3 cut(s) 386, 1038, 1146
PleI GAGTC 3 cut(s) 92, 107, 134
PpsI GAGTC 3 cut(s) 92, 107, 134
Ppu21I YACGTR 1 cut(s) 577
PshBI ATTAAT 1 cut(s) 695
Psp124BI GAGCTC 1 cut(s) 341
Psp6I CCWGG 1 cut(s) 700
PspFI CCCAGC 1 cut(s) 920
PspGI CCWGG 1 cut(s) 700
PspN4I GGNNCC 3 cut(s) 106, 324, 601
PspPI GGNCC 5 cut(s) 220, 304, 323, 372, 668
PstI CTGCAG 2 cut(s) 451, 919
PstNI CAGNNNCTG 2 cut(s) 647, 650
PsuI RGATCY 2 cut(s) 7, 329
PvuII CAGCTG 2 cut(s) 647, 920
RsaI GTAC 3 cut(s) 347, 579, 1170
RsaNI GTAC 3 cut(s) 346, 578, 1169
RseI CAYNNNNRTG 1 cut(s) 1112
SacI GAGCTC 1 cut(s) 341
SaqAI TTAA 4 cut(s) 12, 695, 900, 936
Sau3AI GATC 7 cut(s) 7, 40, 329, 463, 714, 751, 1024
Sau96I GGNCC 5 cut(s) 220, 304, 323, 372, 668
SchI GAGTC 3 cut(s) 92, 107, 134
ScrFI CCNGG 5 cut(s) 307, 320, 350, 702, 990
SduI GDGCHC 3 cut(s) 341, 576, 660
SfaNI GCATC 5 cut(s) 484, 559, 775, 970, 1145
SfcI CTRYAG 3 cut(s) 447, 915, 942
SfuI TTCGAA 2 cut(s) 675, 682
SinI GGWCC 3 cut(s) 220, 372, 668
SmiMI CAYNNNNRTG 1 cut(s) 1112
SsiI CCGC 6 cut(s) 257, 316, 635, 638, 773, 1046
SspMI CTAG 1 cut(s) 756
SstI GAGCTC 1 cut(s) 341
StyD4I CCNGG 5 cut(s) 305, 318, 348, 700, 988
StyI CCWWGG 3 cut(s) 453, 826, 1058
TaaI ACNGT 3 cut(s) 37, 200, 1168
TaiI ACGT 2 cut(s) 362, 579
TaqI TCGA 4 cut(s) 466, 484, 675, 682
TauI GCSGC 4 cut(s) 259, 318, 638, 641
TfiI GAWTC 3 cut(s) 386, 1038, 1146
Tru1I TTAA 4 cut(s) 12, 695, 900, 936
Tru9I TTAA 4 cut(s) 12, 695, 900, 936
TscAI CASTG 3 cut(s) 442, 796, 808
TseFI GTSAC 2 cut(s) 806, 1105
Tsp45I GTSAC 2 cut(s) 806, 1105
TspDTI ATGAA 3 cut(s) 157, 780, 1100
TspGWI ACGGA 1 cut(s) 1104
TspRI CASTG 3 cut(s) 442, 796, 808
VneI GTGCAC 1 cut(s) 572
VpaK11BI GGWCC 3 cut(s) 220, 372, 668
VspI ATTAAT 1 cut(s) 695
XapI RAATTY 2 cut(s) 242, 566
XspI CTAG 1 cut(s) 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.