Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006951

Physical Location & Seq

Genomic Coordinates Reverse (-)

54348372 .. 54351865

Gene Structure 3494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG317300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTTGGATCTTAATGTTGATGTCATTAGCTCTACCGTTGATCAATCCAGTTACGATGATAAGGCCAGAGCTTTGGAGGCCGAGAAGCTCCGAGAAGACTCCGGCTCCTCAGACTCCTCTGTGGTCAATGCAGAGGAAGACTCTTACTCCAACAACACCTCCCCATTCATCTTTGATATTTTGAAGAAAGACAAACACGGTCTTTGCAACAACAAAGAGGACCAGATTGTCCCCTCGCCTGAATTTTCTACAAGGCCGCTTTTTCCGGTGACCGGAGACGGCGGAGGAGGAGGAGGAGAGCTGGGACTGTTGGCCTCGTCAAATTTGACATCGAGGCCCCAGTGGCTGAACTTGTCGTTTGCTGAGTCCGGCGGGCAGGCTGAGCTGAAAGTTGTGCAGCAGAAACAGCAGCAGGCCCGGAAAAGCCGCCGGGGGCCGAGATCTCGGAGCTCTCAGTACCGGGGAGTCACGTTTTACCGGAGGACCGGCCGGTGGGAATCGCATATATGGGATTGTGGGAAGCAAGTTTATTTAGGTGGATTTGACACTGCTCATTCTGCAGCCAAGGCGTATGATCGAGCTGCAATCAAGTTTCGAGGAGTTGATGCTGATATCAATTTCGTGCTAAGCGATTATGAGGAAGATTTGAAACAGATGAGGCATCTGAACAAAGAAGAATTCGTGCATGTGCTTCGTCGCCAAAGCAATGGTGCCTCTCGTGGGAACTCAAAATTGAGAGGCGTGGCAGCAGCGGCAGCAGCTGCTGCCGCTGTTGCTGCGCCCAAAATTGGTCCATTCGAAGTTCGAATGGGACAATTAATTCCTGGGAATAAGTTGATCAAATGTAATGGAAGGGAAGGAGTTACCAACTTTGATCCTAGTATTTATGAAGGGGCGGTAGTAGTAGATGCCAGTACTGAAGGCAGTGGTCACAATCTTGATCTGAGCCTTGGGATGTCTCAGCCTTCTACTGGCCAAAAGAGGAAAGCCTTTGAAATACTTACCAAAGAGAAGCCAATGGTAAATCTTAATCTCCCAATTTTACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0010073 GO:0010093 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0035670 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048444 GO:0048449 GO:0048467 GO:0048481 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0090701 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

349

Amino Acids

38.07

Weight (kDa)

8.3

Isoelectric Point (pI)

52.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	152 - 200	8e-10	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006951)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20380 FvH4_7g20380 FvH4_7g20380 FvH4_7g20380 FvH4_7g20380 FvH4_7g20380 FvH4_7g20380
malus_domestica	MD01G1113400.v1.1 MD07G1180900.v1.1
prunus_persica	Prupe.2G220100_v2.0.a1
pyrus_communis	pycom01g14170
rosa_chinensis	RchiOBHm_Chr1g0364341
rosa_laevigata	RLG00000027494
rosa_multiflora	Rmu_sc0007470.1_g000004
rosa_roxburghii	Rroxscaffold_4G00292420
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug01G0315400 Rorug01G0315400 Rorug01G0315500 Rorug01G0315500
rosa_samantha	Rh1AG323300 Rh1BG285800 Rh1CG302500 Rh1DG317300
rosa_wichuraiana	Rw1G028640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	710
AciI	CCGC	7 cut(s)	257, 282, 372, 427, 752, 768, 896
AclWI	GGATC	2 cut(s)	15, 869
AcoI	YGGCCR	2 cut(s)	487, 973
AcsI	RAATTY	3 cut(s)	242, 322, 677
AcuI	CTGAAG	1 cut(s)	939
AfaI	GTAC	2 cut(s)	458, 916
AfiI	CCNNNNNNNGG	5 cut(s)	272, 492, 720, 788, 971
AgsI	TTSAA	3 cut(s)	184, 649, 995
AjnI	CCWGG	1 cut(s)	823
AluBI	AGCT	8 cut(s)	30, 71, 88, 301, 385, 450, 581, 761
AluI	AGCT	8 cut(s)	30, 71, 88, 301, 385, 450, 581, 761
Alw21I	GWGCWC	1 cut(s)	452
Alw26I	GTCTC	2 cut(s)	270, 963
AlwI	GGATC	2 cut(s)	15, 869
AlwNI	CAGNNNCTG	3 cut(s)	346, 761, 764
AoxI	GGCC	9 cut(s)	63, 78, 254, 312, 335, 414, 434, 487, 973
ApoI	RAATTY	3 cut(s)	242, 322, 677
AseI	ATTAAT	1 cut(s)	818
AspLEI	GCGC	1 cut(s)	781
AspS9I	GGNCC	6 cut(s)	220, 336, 415, 434, 483, 791
AsuC2I	CCSGG	3 cut(s)	418, 431, 461
AsuHPI	GGTGA	1 cut(s)	280
AsuII	TTCGAA	2 cut(s)	798, 805
AvaII	GGWCC	3 cut(s)	220, 483, 791
BalI	TGGCCA	1 cut(s)	975
BanI	GGYRCC	1 cut(s)	710
BanII	GRGCYC	1 cut(s)	452
BauI	CACGAG	1 cut(s)	717
BbsI	GAAGAC	2 cut(s)	102, 144
Bbv12I	GWGCWC	1 cut(s)	452
BceAI	ACGGC	1 cut(s)	295
BcgI	CGANNNNNNTGC	2 cut(s)	674, 708
BciT130I	CCWGG	1 cut(s)	825
BclI	TGATCA	2 cut(s)	40, 837
BcnI	CCSGG	3 cut(s)	418, 431, 461
BcoDI	GTCTC	2 cut(s)	270, 963
BfaI	CTAG	1 cut(s)	879
BfmI	CTRYAG	1 cut(s)	558
BglI	GCCNNNNNGGC	1 cut(s)	343
BglII	AGATCT	1 cut(s)	440
BlpI	GCTNAGC	2 cut(s)	381, 626
BmcAI	AGTACT	1 cut(s)	916
Bme1390I	CCNGG	4 cut(s)	418, 431, 461, 825
Bme18I	GGWCC	3 cut(s)	220, 483, 791
BmgT120I	GGNCC	6 cut(s)	220, 336, 415, 434, 483, 791
BmiI	GGNNCC	4 cut(s)	106, 338, 435, 712
BmrFI	CCNGG	4 cut(s)	418, 431, 461, 825
BmrI	ACTGGG	1 cut(s)	334
BmsI	GCATC	3 cut(s)	595, 670, 898
BmuI	ACTGGG	1 cut(s)	334
BpiI	GAAGAC	2 cut(s)	102, 144
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
Bpu1102I	GCTNAGC	2 cut(s)	381, 626
Bpu14I	TTCGAA	2 cut(s)	798, 805
BpuMI	CCSGG	3 cut(s)	418, 431, 461
BsaJI	CCNNGG	5 cut(s)	430, 460, 564, 824, 949
BsaWI	WCCGGW	3 cut(s)	265, 272, 477
BsaXI	ACNNNNNCTCC	6 cut(s)	89, 119, 131, 143, 161, 173
Bsc4I	CCNNNNNNNGG	5 cut(s)	272, 492, 720, 788, 971
Bse118I	RCCGGY	2 cut(s)	485, 489
Bse1I	ACTGG	4 cut(s)	48, 340, 912, 976
Bse3DI	GCAATG	1 cut(s)	712
BseBI	CCWGG	1 cut(s)	825
BseDI	CCNNGG	5 cut(s)	430, 460, 564, 824, 949
BseGI	GGATG	1 cut(s)	960
BseLI	CCNNNNNNNGG	5 cut(s)	272, 492, 720, 788, 971
BseMI	GCAATG	1 cut(s)	712
BseMII	CTCAG	6 cut(s)	123, 354, 372, 467, 935, 974
BseNI	ACTGG	4 cut(s)	48, 340, 912, 976
BseRI	GAGGAG	7 cut(s)	97, 106, 300, 303, 306, 309, 612
BseX3I	CGGCCG	1 cut(s)	487
BseYI	CCCAGC	1 cut(s)	301
BsgI	GTGCAG	1 cut(s)	416
Bsh1285I	CGRYCG	1 cut(s)	490
BshFI	GGCC	9 cut(s)	65, 80, 256, 314, 337, 416, 436, 489, 975
BshNI	GGYRCC	1 cut(s)	710
BsiEI	CGRYCG	1 cut(s)	490
BsiHKAI	GWGCWC	1 cut(s)	452
BslFI	GGGAC	3 cut(s)	215, 318, 825
BslI	CCNNNNNNNGG	5 cut(s)	272, 492, 720, 788, 971
BsmAI	GTCTC	2 cut(s)	270, 963
BsmBI	CGTCTC	1 cut(s)	270
BsmFI	GGGAC	3 cut(s)	215, 318, 825
BsnI	GGCC	9 cut(s)	65, 80, 256, 314, 337, 416, 436, 489, 975
Bsp119I	TTCGAA	2 cut(s)	798, 805
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp143I	GATC	7 cut(s)	7, 40, 440, 574, 837, 874, 940
Bsp1720I	GCTNAGC	2 cut(s)	381, 626
BspACI	CCGC	7 cut(s)	257, 282, 372, 427, 752, 768, 896
BspANI	GGCC	9 cut(s)	65, 80, 256, 314, 337, 416, 436, 489, 975
BspCNI	CTCAG	6 cut(s)	122, 355, 373, 466, 936, 973
BspLI	GGNNCC	4 cut(s)	106, 338, 435, 712
BspMAI	CTGCAG	1 cut(s)	562
BspPI	GGATC	2 cut(s)	15, 869
BspT104I	TTCGAA	2 cut(s)	798, 805
BspT107I	GGYRCC	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	712
BsrFI	RCCGGY	2 cut(s)	485, 489
BsrI	ACTGG	4 cut(s)	48, 340, 912, 976
BssAI	RCCGGY	2 cut(s)	485, 489
BssECI	CCNNGG	5 cut(s)	430, 460, 564, 824, 949
BssMI	GATC	7 cut(s)	7, 40, 440, 574, 837, 874, 940
BssSI	CACGAG	1 cut(s)	717
BssT1I	CCWWGG	2 cut(s)	564, 949
Bst2BI	CACGAG	1 cut(s)	717
Bst2UI	CCWGG	1 cut(s)	825
Bst4CI	ACNGT	3 cut(s)	37, 200, 309
BstAPI	GCANNNNNTGC	2 cut(s)	761, 764
BstBI	TTCGAA	2 cut(s)	798, 805
BstC8I	GCNNGC	3 cut(s)	374, 378, 414
BstDEI	CTNAG	7 cut(s)	109, 363, 381, 453, 626, 944, 960
BstEII	GGTNACC	1 cut(s)	268
BstF5I	GGATG	1 cut(s)	960
BstHHI	GCGC	1 cut(s)	781
BstKTI	GATC	7 cut(s)	10, 43, 443, 577, 840, 877, 943
BstMAI	GTCTC	2 cut(s)	270, 963
BstMBI	GATC	7 cut(s)	7, 40, 440, 574, 837, 874, 940
BstMCI	CGRYCG	1 cut(s)	490
BstNI	CCWGG	1 cut(s)	825
BstNSI	RCATGY	1 cut(s)	689
BstPI	GGTNACC	1 cut(s)	268
BstSCI	CCNGG	4 cut(s)	416, 429, 459, 823
BstSFI	CTRYAG	1 cut(s)	558
BstV2I	GAAGAC	2 cut(s)	102, 144
BstX2I	RGATCY	2 cut(s)	7, 440
BstXI	CCANNNNNNTGG	2 cut(s)	73, 707
BstYI	RGATCY	2 cut(s)	7, 440
BstZI	CGGCCG	1 cut(s)	487
BsuRI	GGCC	9 cut(s)	65, 80, 256, 314, 337, 416, 436, 489, 975
BtsCI	GGATG	1 cut(s)	960
BtsI	GCAGTG	2 cut(s)	546, 931
BtsIMutI	CAGTG	3 cut(s)	347, 546, 931
Cac8I	GCNNGC	3 cut(s)	374, 378, 414
CaiI	CAGNNNCTG	3 cut(s)	346, 761, 764
CfoI	GCGC	1 cut(s)	781
Cfr10I	RCCGGY	2 cut(s)	485, 489
Cfr13I	GGNCC	6 cut(s)	220, 336, 415, 434, 483, 791
Csp6I	GTAC	2 cut(s)	457, 915
CviAII	CATG	1 cut(s)	686
CviQI	GTAC	2 cut(s)	457, 915
DdeI	CTNAG	7 cut(s)	109, 363, 381, 453, 626, 944, 960
DpnI	GATC	7 cut(s)	9, 42, 442, 576, 839, 876, 942
DpnII	GATC	7 cut(s)	7, 40, 440, 574, 837, 874, 940
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	2 cut(s)	487, 973
EagI	CGGCCG	1 cut(s)	487
EciI	GGCGGA	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	450
EclXI	CGGCCG	1 cut(s)	487
Eco130I	CCWWGG	2 cut(s)	564, 949
Eco24I	GRGCYC	1 cut(s)	452
Eco32I	GATATC	1 cut(s)	613
Eco47I	GGWCC	3 cut(s)	220, 483, 791
Eco52I	CGGCCG	1 cut(s)	487
Eco53kI	GAGCTC	1 cut(s)	450
Eco57I	CTGAAG	1 cut(s)	939
Eco91I	GGTNACC	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	450
EcoO109I	RGGNCCY	1 cut(s)	336
EcoO65I	GGTNACC	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	677
EcoRII	CCWGG	1 cut(s)	823
EcoRV	GATATC	1 cut(s)	613
EcoT14I	CCWWGG	2 cut(s)	564, 949
EcoT38I	GRGCYC	1 cut(s)	452
ErhI	CCWWGG	2 cut(s)	564, 949
Esp3I	CGTCTC	1 cut(s)	270
FaeI	CATG	1 cut(s)	689
FaiI	YATR	7 cut(s)	504, 506, 508, 573, 636, 687, 888
FaqI	GGGAC	3 cut(s)	215, 318, 825
FatI	CATG	1 cut(s)	685
FauI	CCCGC	1 cut(s)	365
FbaI	TGATCA	2 cut(s)	40, 837
FokI	GGATG	1 cut(s)	967
FriOI	GRGCYC	1 cut(s)	452
FspBI	CTAG	1 cut(s)	879
GlaI	GCGC	1 cut(s)	780
GsaI	CCCAGC	1 cut(s)	305
HaeIII	GGCC	9 cut(s)	65, 80, 256, 314, 337, 416, 436, 489, 975
HhaI	GCGC	1 cut(s)	781
Hin1II	CATG	1 cut(s)	689
Hin6I	GCGC	1 cut(s)	779
HinP1I	GCGC	1 cut(s)	779
HinfI	GANTC	6 cut(s)	98, 113, 140, 365, 465, 497
HphI	GGTGA	1 cut(s)	280
Hpy188I	TCNGA	5 cut(s)	92, 112, 447, 666, 945
Hpy188III	TCNNGA	1 cut(s)	938
Hpy99I	CGWCG	1 cut(s)	699
HpyAV	CCTTC	5 cut(s)	846, 851, 884, 914, 975
HpyCH4III	ACNGT	3 cut(s)	37, 200, 309
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	6 cut(s)	131, 207, 397, 560, 584, 685
HpyF3I	CTNAG	7 cut(s)	109, 363, 381, 453, 626, 944, 960
HpySE526I	ACGT	1 cut(s)	470
Hsp92II	CATG	1 cut(s)	689
HspAI	GCGC	1 cut(s)	779
Ksp22I	TGATCA	2 cut(s)	40, 837
Kzo9I	GATC	7 cut(s)	7, 40, 440, 574, 837, 874, 940
LmnI	GCTCC	3 cut(s)	93, 110, 447
LweI	GCATC	3 cut(s)	595, 670, 898
MaeI	CTAG	1 cut(s)	879
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	5 cut(s)	50, 268, 466, 862, 929
MalI	GATC	7 cut(s)	9, 42, 442, 576, 839, 876, 942
MboI	GATC	7 cut(s)	7, 40, 440, 574, 837, 874, 940
MboII	GAAGA	5 cut(s)	107, 149, 196, 653, 686
MflI	RGATCY	2 cut(s)	7, 440
MhlI	GDGCHC	1 cut(s)	452
MlsI	TGGCCA	1 cut(s)	975
MluCI	AATT	9 cut(s)	242, 322, 616, 677, 731, 786, 815, 819, 1038
MluNI	TGGCCA	1 cut(s)	975
MlyI	GAGTC	5 cut(s)	92, 107, 134, 374, 474
MmeI	TCCRAC	1 cut(s)	174
Mox20I	TGGCCA	1 cut(s)	975
MscI	TGGCCA	1 cut(s)	975
MseI	TTAA	3 cut(s)	12, 818, 1029
Msp20I	TGGCCA	1 cut(s)	975
MspA1I	CMGCKG	3 cut(s)	752, 761, 770
MspR9I	CCNGG	4 cut(s)	418, 431, 461, 825
MvaI	CCWGG	1 cut(s)	825
NciI	CCSGG	3 cut(s)	418, 431, 461
NdeII	GATC	7 cut(s)	7, 40, 440, 574, 837, 874, 940
NlaIII	CATG	1 cut(s)	689
NlaIV	GGNNCC	4 cut(s)	106, 338, 435, 712
NmeAIII	GCCGAG	2 cut(s)	106, 462
NmuCI	GTSAC	3 cut(s)	268, 466, 929
NspI	RCATGY	1 cut(s)	689
NspV	TTCGAA	2 cut(s)	798, 805
PcsI	WCGNNNNNNNCGW	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	497
PleI	GAGTC	5 cut(s)	92, 107, 134, 373, 473
PpsI	GAGTC	5 cut(s)	92, 107, 134, 373, 473
PshBI	ATTAAT	1 cut(s)	818
Psp124BI	GAGCTC	1 cut(s)	452
Psp6I	CCWGG	1 cut(s)	823
PspEI	GGTNACC	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	823
PspN4I	GGNNCC	4 cut(s)	106, 338, 435, 712
PspPI	GGNCC	6 cut(s)	220, 336, 415, 434, 483, 791
PstI	CTGCAG	1 cut(s)	562
PstNI	CAGNNNCTG	3 cut(s)	346, 761, 764
PsuI	RGATCY	2 cut(s)	7, 440
PvuII	CAGCTG	1 cut(s)	761
RsaI	GTAC	2 cut(s)	458, 916
RsaNI	GTAC	2 cut(s)	457, 915
SacI	GAGCTC	1 cut(s)	452
SaqAI	TTAA	3 cut(s)	12, 818, 1029
Sau3AI	GATC	7 cut(s)	7, 40, 440, 574, 837, 874, 940
Sau96I	GGNCC	6 cut(s)	220, 336, 415, 434, 483, 791
ScaI	AGTACT	1 cut(s)	916
SchI	GAGTC	5 cut(s)	92, 107, 134, 374, 474
ScrFI	CCNGG	4 cut(s)	418, 431, 461, 825
SduI	GDGCHC	1 cut(s)	452
SfaNI	GCATC	3 cut(s)	595, 670, 898
SfcI	CTRYAG	1 cut(s)	558
SfuI	TTCGAA	2 cut(s)	798, 805
SinI	GGWCC	3 cut(s)	220, 483, 791
Sse9I	AATT	9 cut(s)	242, 322, 616, 677, 731, 786, 815, 819, 1038
SsiI	CCGC	7 cut(s)	257, 282, 372, 427, 752, 768, 896
SspMI	CTAG	1 cut(s)	879
SstI	GAGCTC	1 cut(s)	452
StyD4I	CCNGG	4 cut(s)	416, 429, 459, 823
StyI	CCWWGG	2 cut(s)	564, 949
TaaI	ACNGT	3 cut(s)	37, 200, 309
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	5 cut(s)	332, 577, 595, 798, 805
TasI	AATT	9 cut(s)	242, 322, 616, 677, 731, 786, 815, 819, 1038
TatI	WGTACW	1 cut(s)	914
TauI	GCSGC	4 cut(s)	259, 429, 755, 770
TfiI	GAWTC	1 cut(s)	497
Tru1I	TTAA	3 cut(s)	12, 818, 1029
Tru9I	TTAA	3 cut(s)	12, 818, 1029
TscAI	CASTG	3 cut(s)	347, 553, 931
TseFI	GTSAC	3 cut(s)	268, 466, 929
Tsp45I	GTSAC	3 cut(s)	268, 466, 929
TspDTI	ATGAA	2 cut(s)	157, 903
TspRI	CASTG	3 cut(s)	347, 553, 931
VpaK11BI	GGWCC	3 cut(s)	220, 483, 791
VspI	ATTAAT	1 cut(s)	818
XapI	RAATTY	3 cut(s)	242, 322, 677
XceI	RCATGY	1 cut(s)	689
XspI	CTAG	1 cut(s)	879
ZrmI	AGTACT	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.