RchiOBHm_Chr1g0364341

Transcription factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
55521388 .. 55524784
3397 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58903

Sequence Viewer

Length: 1374 bp
ATGTTGGATCTTAATGTTGATGTCATTAGCTCTACCGTTGATCAATCCAGTTACGATGATAAGGCCAGAGCTTTGGAGGCCGAGAAGCTCCGAGAAGACTCCGGCTCCTCAGACTCCTCTGTGGTCAATGCAGAGGAAGACTCTTACTCCAACAACACCTCCCCATTCATCTTTGATATTTTGAAGAAAGACAAACACGGTCTTTGCAACAACAAAGAGGACCAGATTGTCCCCTCGCCTGAATTTGCTACAAGGTCGCTTTTTCCGGTGACCGGAGACGGCGGAGGAGGAGGAGGAGAGCTGGGACTGTTGGCCTCGTCAAATTCGACATCGAGGCCTCAGTGGCTGAACTTGTCGTTTGCTGAGTCCGGCGGGCAGGCTGAGCTGAAAGTTGTGCAGCAGAAACAGCAGCAGGCCCGGAAAAGCCGCCGGGGGCCGAGATCTCGGAGCTCTCAGTACCGGGGAGTTACGTTTTACCGGAGGACTGGCCGGTGGGAATCGCATATATGGGATTGTGGGAAGCAAGTTTATTTAGGTGGATTTGACACTGCTCATTCTGCAGCCAAGGCGTATGATCGAGCTGCAATCAAGTTTCGAGGAGTTGATGCTGATATCAATTTCGTGCTAAGCGATTATGAGGAAGATTTGAAACAGATGAGGCATCTGAACAAAGAAGAATTCGTGCACGTGCTACGTCGCCAAAGCAATGGAGCCTCTCGTGGGAACTCAAAATTGAGAGGCGTGGCGGCAGCGGCAGCAGCAGCCGCTGCTGTGCCTAAAATTGGTCCATTCGAAGTTCGAATGGGACAATTAATTCCTGGGAATAAGTTGATCAAATGTAATGGAAGGGAAGGAGTTGCCAACTTTGATCCTAGTATTTATGAAGGGGCGGTAGTAGTAGATGCCAGTACTGAAGGCAGTGGTCACAATCTTGATCTGAGCCTTGGGATTTCTCAGCCTTCTACTGGCCAAAAGAGGAAAGCCTTTGAAATAAATACCAAAGAGAAGCCAATGGTTAATGGCTCTGCTTCTGCAGCTGGGGGACAACCACTTAATGCTACAGCAATGCTATCCAAGCATCCTGCCTTGTATTCTGAGATATATCCGGGTTTCTTACATAAAACTGAGGAAATGGCAACAGATTATCATAAGAGAATCCAAGCGGTTTCTTCACCGAGGTTTTCAAACTGGGCATGGCAAATGAACGGAAACAACAACAATGTTACTCCAATGCAAGTGTTCTCTATTGCAGCATCATCAGGATTCTCATCTTCCATAGCTACCGTACCTCCATCAGCCACTAACCAGCTTCCACCAATTCTCCAAGACAATTCTACTTACAATCTGCGCCACCCTTTTCCCACCAGTTTGTAA

Protein Analysis

457

Amino Acids

49.67

Weight (kDa)

8.55

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 152 - 200 1.2e-09 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 227
AciI CCGC 8 cut(s) 282, 372, 427, 746, 752, 765, 890, 1163
AclWI GGATC 2 cut(s) 15, 863
AcoI YGGCCR 2 cut(s) 487, 967
AcsI RAATTY 3 cut(s) 242, 322, 677
AcuI CTGAAG 1 cut(s) 933
AcvI CACGTG 1 cut(s) 688
AfaI GTAC 3 cut(s) 458, 910, 1287
AfiI CCNNNNNNNGG 4 cut(s) 272, 720, 782, 965
AgsI TTSAA 4 cut(s) 184, 649, 989, 1185
AjnI CCWGG 1 cut(s) 817
Alw21I GWGCWC 2 cut(s) 452, 687
Alw26I GTCTC 1 cut(s) 270
Alw44I GTGCAC 1 cut(s) 683
AlwI GGATC 2 cut(s) 15, 863
AlwNI CAGNNNCTG 2 cut(s) 346, 767
AoxI GGCC 8 cut(s) 63, 78, 312, 335, 414, 434, 487, 967
ApaLI GTGCAC 1 cut(s) 683
ApoI RAATTY 3 cut(s) 242, 322, 677
AseI ATTAAT 1 cut(s) 812
AspLEI GCGC 1 cut(s) 1350
AspS9I GGNCC 4 cut(s) 220, 415, 434, 785
AsuC2I CCSGG 4 cut(s) 418, 431, 461, 1107
AsuHPI GGTGA 2 cut(s) 280, 1164
AsuII TTCGAA 2 cut(s) 792, 799
AvaII GGWCC 2 cut(s) 220, 785
BaeGI GKGCMC 1 cut(s) 687
BalI TGGCCA 1 cut(s) 969
BanII GRGCYC 1 cut(s) 452
BauI CACGAG 1 cut(s) 717
BbrPI CACGTG 1 cut(s) 688
BbsI GAAGAC 2 cut(s) 102, 144
Bbv12I GWGCWC 2 cut(s) 452, 687
BccI CCATC 1 cut(s) 1300
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 1 cut(s) 819
BclI TGATCA 2 cut(s) 40, 831
BcnI CCSGG 4 cut(s) 418, 431, 461, 1107
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 1 cut(s) 873
BfmI CTRYAG 3 cut(s) 558, 1032, 1059
BglI GCCNNNNNGGC 1 cut(s) 343
BglII AGATCT 1 cut(s) 440
BlpI GCTNAGC 2 cut(s) 381, 626
BmcAI AGTACT 1 cut(s) 910
Bme1390I CCNGG 5 cut(s) 418, 431, 461, 819, 1107
Bme18I GGWCC 2 cut(s) 220, 785
BmgT120I GGNCC 4 cut(s) 220, 415, 434, 785
BmiI GGNNCC 3 cut(s) 106, 435, 712
BmrFI CCNGG 5 cut(s) 418, 431, 461, 819, 1107
BmrI ACTGGG 1 cut(s) 1198
BmsI GCATC 5 cut(s) 595, 670, 892, 1087, 1262
BmuI ACTGGG 1 cut(s) 1198
BpiI GAAGAC 2 cut(s) 102, 144
BplI GAGNNNNNCTC 2 cut(s) 125, 157
Bpu1102I GCTNAGC 2 cut(s) 381, 626
Bpu14I TTCGAA 2 cut(s) 792, 799
BpuMI CCSGG 4 cut(s) 418, 431, 461, 1107
BsaAI YACGTR 1 cut(s) 688
BsaBI GATNNNNATC 1 cut(s) 1267
BsaJI CCNNGG 6 cut(s) 430, 460, 564, 818, 943, 1175
BsaWI WCCGGW 3 cut(s) 265, 272, 477
Bsc4I CCNNNNNNNGG 4 cut(s) 272, 720, 782, 965
Bse118I RCCGGY 1 cut(s) 489
Bse1I ACTGG 6 cut(s) 48, 490, 906, 970, 1193, 1365
Bse3DI GCAATG 2 cut(s) 712, 1071
Bse8I GATNNNNATC 1 cut(s) 1267
BseBI CCWGG 1 cut(s) 819
BseDI CCNNGG 6 cut(s) 430, 460, 564, 818, 943, 1175
BseGI GGATG 1 cut(s) 1078
BseJI GATNNNNATC 1 cut(s) 1267
BseLI CCNNNNNNNGG 4 cut(s) 272, 720, 782, 965
BseMI GCAATG 2 cut(s) 712, 1071
BseMII CTCAG 9 cut(s) 123, 353, 354, 372, 467, 929, 968, 1086, 1116
BseNI ACTGG 6 cut(s) 48, 490, 906, 970, 1193, 1365
BseRI GAGGAG 7 cut(s) 97, 106, 300, 303, 306, 309, 612
BseSI GKGCMC 1 cut(s) 687
BseYI CCCAGC 2 cut(s) 301, 1037
BsgI GTGCAG 1 cut(s) 416
BshFI GGCC 8 cut(s) 65, 80, 314, 337, 416, 436, 489, 969
BsiHKAI GWGCWC 2 cut(s) 452, 687
BslFI GGGAC 4 cut(s) 215, 318, 819, 1056
BslI CCNNNNNNNGG 4 cut(s) 272, 720, 782, 965
BsmAI GTCTC 1 cut(s) 270
BsmBI CGTCTC 1 cut(s) 270
BsmFI GGGAC 4 cut(s) 215, 318, 819, 1056
BsnI GGCC 8 cut(s) 65, 80, 314, 337, 416, 436, 489, 969
Bsp119I TTCGAA 2 cut(s) 792, 799
Bsp1286I GDGCHC 2 cut(s) 452, 687
Bsp143I GATC 7 cut(s) 7, 40, 440, 574, 831, 868, 934
Bsp1720I GCTNAGC 2 cut(s) 381, 626
BspACI CCGC 8 cut(s) 282, 372, 427, 746, 752, 765, 890, 1163
BspANI GGCC 8 cut(s) 65, 80, 314, 337, 416, 436, 489, 969
BspCNI CTCAG 9 cut(s) 122, 352, 355, 373, 466, 930, 967, 1087, 1117
BspLI GGNNCC 3 cut(s) 106, 435, 712
BspMAI CTGCAG 2 cut(s) 562, 1036
BspPI GGATC 2 cut(s) 15, 863
BspT104I TTCGAA 2 cut(s) 792, 799
BsrDI GCAATG 2 cut(s) 712, 1071
BsrFI RCCGGY 1 cut(s) 489
BsrI ACTGG 6 cut(s) 48, 490, 906, 970, 1193, 1365
BssAI RCCGGY 1 cut(s) 489
BssECI CCNNGG 6 cut(s) 430, 460, 564, 818, 943, 1175
BssMI GATC 7 cut(s) 7, 40, 440, 574, 831, 868, 934
BssSI CACGAG 1 cut(s) 717
BssT1I CCWWGG 2 cut(s) 564, 943
Bst2BI CACGAG 1 cut(s) 717
Bst2UI CCWGG 1 cut(s) 819
Bst4CI ACNGT 4 cut(s) 37, 200, 309, 1285
BstAPI GCANNNNNTGC 1 cut(s) 767
BstBAI YACGTR 1 cut(s) 688
BstBI TTCGAA 2 cut(s) 792, 799
BstC8I GCNNGC 3 cut(s) 374, 378, 414
BstEII GGTNACC 1 cut(s) 268
BstF5I GGATG 1 cut(s) 1078
BstHHI GCGC 1 cut(s) 1350
BstKTI GATC 7 cut(s) 10, 43, 443, 577, 834, 871, 937
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 7 cut(s) 7, 40, 440, 574, 831, 868, 934
BstNI CCWGG 1 cut(s) 819
BstPI GGTNACC 1 cut(s) 268
BstSCI CCNGG 5 cut(s) 416, 429, 459, 817, 1105
BstSFI CTRYAG 3 cut(s) 558, 1032, 1059
BstSLI GKGCMC 1 cut(s) 687
BstV2I GAAGAC 2 cut(s) 102, 144
BstX2I RGATCY 2 cut(s) 7, 440
BstXI CCANNNNNNTGG 2 cut(s) 73, 707
BstYI RGATCY 2 cut(s) 7, 440
BsuRI GGCC 8 cut(s) 65, 80, 314, 337, 416, 436, 489, 969
BtsCI GGATG 1 cut(s) 1078
BtsI GCAGTG 2 cut(s) 546, 925
BtsIMutI CAGTG 3 cut(s) 347, 546, 925
Cac8I GCNNGC 3 cut(s) 374, 378, 414
CaiI CAGNNNCTG 2 cut(s) 346, 767
CfoI GCGC 1 cut(s) 1350
Cfr10I RCCGGY 1 cut(s) 489
Cfr13I GGNCC 4 cut(s) 220, 415, 434, 785
Csp6I GTAC 3 cut(s) 457, 909, 1286
CviAII CATG 1 cut(s) 1194
CviQI GTAC 3 cut(s) 457, 909, 1286
DpnI GATC 7 cut(s) 9, 42, 442, 576, 833, 870, 936
DpnII GATC 7 cut(s) 7, 40, 440, 574, 831, 868, 934
DrdI GACNNNNNNGTC 1 cut(s) 227
DseDI GACNNNNNNGTC 1 cut(s) 227
EaeI YGGCCR 2 cut(s) 487, 967
EciI GGCGGA 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 450
Eco130I CCWWGG 2 cut(s) 564, 943
Eco147I AGGCCT 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 452
Eco32I GATATC 1 cut(s) 613
Eco47I GGWCC 2 cut(s) 220, 785
Eco53kI GAGCTC 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 933
Eco72I CACGTG 1 cut(s) 688
Eco91I GGTNACC 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 450
EcoO65I GGTNACC 1 cut(s) 268
EcoRI GAATTC 1 cut(s) 677
EcoRII CCWGG 1 cut(s) 817
EcoRV GATATC 1 cut(s) 613
EcoT14I CCWWGG 2 cut(s) 564, 943
EcoT38I GRGCYC 1 cut(s) 452
ErhI CCWWGG 2 cut(s) 564, 943
Esp3I CGTCTC 1 cut(s) 270
FaeI CATG 1 cut(s) 1197
FaqI GGGAC 4 cut(s) 215, 318, 819, 1056
FatI CATG 1 cut(s) 1193
FauI CCCGC 1 cut(s) 365
FbaI TGATCA 2 cut(s) 40, 831
FokI GGATG 1 cut(s) 1065
FriOI GRGCYC 1 cut(s) 452
FspBI CTAG 1 cut(s) 873
GlaI GCGC 1 cut(s) 1349
GsaI CCCAGC 2 cut(s) 305, 1041
HaeIII GGCC 8 cut(s) 65, 80, 314, 337, 416, 436, 489, 969
HhaI GCGC 1 cut(s) 1350
Hin1II CATG 1 cut(s) 1197
Hin6I GCGC 1 cut(s) 1348
HinP1I GCGC 1 cut(s) 1348
HinfI GANTC 7 cut(s) 98, 113, 140, 365, 497, 1155, 1263
HphI GGTGA 2 cut(s) 280, 1164
Hpy166II GTNNAC 1 cut(s) 685
Hpy188I TCNGA 6 cut(s) 92, 112, 447, 666, 939, 1096
Hpy188III TCNNGA 2 cut(s) 932, 1260
Hpy8I GTNNAC 1 cut(s) 685
Hpy99I CGWCG 1 cut(s) 699
HpyAV CCTTC 5 cut(s) 840, 845, 878, 908, 969
HpyCH4III ACNGT 4 cut(s) 37, 200, 309, 1285
HpyCH4IV ACGT 3 cut(s) 470, 687, 694
HpyCH4V TGCA 9 cut(s) 131, 207, 397, 560, 584, 685, 1034, 1234, 1250
HpySE526I ACGT 3 cut(s) 470, 687, 694
Hsp92II CATG 1 cut(s) 1197
HspAI GCGC 1 cut(s) 1348
Ksp22I TGATCA 2 cut(s) 40, 831
Kzo9I GATC 7 cut(s) 7, 40, 440, 574, 831, 868, 934
LmnI GCTCC 4 cut(s) 93, 110, 447, 710
LweI GCATC 5 cut(s) 595, 670, 892, 1087, 1262
MaeI CTAG 1 cut(s) 873
MaeII ACGT 3 cut(s) 470, 687, 694
MaeIII GTNAC 5 cut(s) 50, 268, 466, 923, 1222
MalI GATC 7 cut(s) 9, 42, 442, 576, 833, 870, 936
MboI GATC 7 cut(s) 7, 40, 440, 574, 831, 868, 934
MboII GAAGA 7 cut(s) 107, 149, 196, 653, 686, 1161, 1263
MflI RGATCY 2 cut(s) 7, 440
MhlI GDGCHC 2 cut(s) 452, 687
MlsI TGGCCA 1 cut(s) 969
MluNI TGGCCA 1 cut(s) 969
MlyI GAGTC 4 cut(s) 92, 107, 134, 374
MmeI TCCRAC 1 cut(s) 174
Mox20I TGGCCA 1 cut(s) 969
MscI TGGCCA 1 cut(s) 969
MseI TTAA 4 cut(s) 12, 812, 1017, 1053
Msp20I TGGCCA 1 cut(s) 969
MspA1I CMGCKG 3 cut(s) 752, 767, 1037
MspR9I CCNGG 5 cut(s) 418, 431, 461, 819, 1107
MvaI CCWGG 1 cut(s) 819
NciI CCSGG 4 cut(s) 418, 431, 461, 1107
NdeII GATC 7 cut(s) 7, 40, 440, 574, 831, 868, 934
NlaIII CATG 1 cut(s) 1197
NlaIV GGNNCC 3 cut(s) 106, 435, 712
NmeAIII GCCGAG 2 cut(s) 106, 462
NmuCI GTSAC 2 cut(s) 268, 923
NspV TTCGAA 2 cut(s) 792, 799
PceI AGGCCT 1 cut(s) 337
PcsI WCGNNNNNNNCGW 2 cut(s) 323, 627
PfeI GAWTC 3 cut(s) 497, 1155, 1263
PleI GAGTC 4 cut(s) 92, 107, 134, 373
PmaCI CACGTG 1 cut(s) 688
PmlI CACGTG 1 cut(s) 688
PpsI GAGTC 4 cut(s) 92, 107, 134, 373
Ppu21I YACGTR 1 cut(s) 688
PshBI ATTAAT 1 cut(s) 812
Psp124BI GAGCTC 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 817
PspCI CACGTG 1 cut(s) 688
PspEI GGTNACC 1 cut(s) 268
PspFI CCCAGC 2 cut(s) 301, 1037
PspGI CCWGG 1 cut(s) 817
PspN4I GGNNCC 3 cut(s) 106, 435, 712
PspPI GGNCC 4 cut(s) 220, 415, 434, 785
PstI CTGCAG 2 cut(s) 562, 1036
PstNI CAGNNNCTG 2 cut(s) 346, 767
PsuI RGATCY 2 cut(s) 7, 440
PvuII CAGCTG 1 cut(s) 1037
RsaI GTAC 3 cut(s) 458, 910, 1287
RsaNI GTAC 3 cut(s) 457, 909, 1286
SacI GAGCTC 1 cut(s) 452
SaqAI TTAA 4 cut(s) 12, 812, 1017, 1053
Sau3AI GATC 7 cut(s) 7, 40, 440, 574, 831, 868, 934
Sau96I GGNCC 4 cut(s) 220, 415, 434, 785
ScaI AGTACT 1 cut(s) 910
SchI GAGTC 4 cut(s) 92, 107, 134, 374
ScrFI CCNGG 5 cut(s) 418, 431, 461, 819, 1107
SduI GDGCHC 2 cut(s) 452, 687
SfaNI GCATC 5 cut(s) 595, 670, 892, 1087, 1262
SfcI CTRYAG 3 cut(s) 558, 1032, 1059
SfuI TTCGAA 2 cut(s) 792, 799
SinI GGWCC 2 cut(s) 220, 785
SseBI AGGCCT 1 cut(s) 337
SsiI CCGC 8 cut(s) 282, 372, 427, 746, 752, 765, 890, 1163
SspMI CTAG 1 cut(s) 873
SstI GAGCTC 1 cut(s) 452
StuI AGGCCT 1 cut(s) 337
StyD4I CCNGG 5 cut(s) 416, 429, 459, 817, 1105
StyI CCWWGG 2 cut(s) 564, 943
TaaI ACNGT 4 cut(s) 37, 200, 309, 1285
TaiI ACGT 3 cut(s) 473, 690, 697
TaqI TCGA 6 cut(s) 326, 332, 577, 595, 792, 799
TatI WGTACW 1 cut(s) 908
TauI GCSGC 4 cut(s) 429, 749, 755, 767
TfiI GAWTC 3 cut(s) 497, 1155, 1263
Tru1I TTAA 4 cut(s) 12, 812, 1017, 1053
Tru9I TTAA 4 cut(s) 12, 812, 1017, 1053
TscAI CASTG 3 cut(s) 347, 553, 925
TseFI GTSAC 2 cut(s) 268, 923
Tsp45I GTSAC 2 cut(s) 268, 923
TspDTI ATGAA 3 cut(s) 157, 897, 1217
TspGWI ACGGA 1 cut(s) 1221
TspRI CASTG 3 cut(s) 347, 553, 925
VneI GTGCAC 1 cut(s) 683
VpaK11BI GGWCC 2 cut(s) 220, 785
VspI ATTAAT 1 cut(s) 812
XapI RAATTY 3 cut(s) 242, 322, 677
XspI CTAG 1 cut(s) 873
ZrmI AGTACT 1 cut(s) 910
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.