MD07G1210500.v1.1

Belongs to the small heat shock protein (HSP20) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0016946
Physical Location & Seq
Forward (+)
28959232 .. 28959501
270 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1210500.v1.1.491

Sequence Viewer

Length: 270 bp
ATGATCAAAAAGGAGGAGGTGAAAGTGGAGGTGGAGGACGGGAGGGTCCTGCAGATCAGCGATGAGAGGAACAGGGAGCAGGAGGATAAGAACGACAAGTGGCACAGGGTGGAGATGAGCAGTGACAAGTTCATAAGGAGGTTCAGGCTGCCGGAGAACGCGAAGATTGATCAGGTGAGGGCGGCGATGGAGAATAGGGTGCTGACTACGTCTTTGCCGAAAGAGGAGGAGAAGAAGCCCGAGGTCAAGGCCATTGAAATCTCTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
HSP20

Protein Analysis

90

Amino Acids

10.56

Weight (kDa)

5.94

Isoelectric Point (pI)

58.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 2 - 88 3.2e-21 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
AccII CGCG 1 cut(s) 161
AciI CCGC 1 cut(s) 182
AdeI CACNNNGTG 1 cut(s) 109
AgsI TTSAA 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 1 cut(s) 148
ArsI GACNNNNNNTTYG 2 cut(s) 196, 228
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 2 cut(s) 31, 187
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 46
BbvI GCAGC 1 cut(s) 135
BccI CCATC 1 cut(s) 181
BclI TGATCA 2 cut(s) 3, 169
BfmI CTRYAG 1 cut(s) 50
BisI GCNGC 2 cut(s) 149, 183
BlsI GCNGC 2 cut(s) 150, 184
Bme18I GGWCC 1 cut(s) 46
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 47
BsaJI CCNNGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 240
BseRI GAGGAG 3 cut(s) 29, 239, 242
BseXI GCAGC 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 161
BshFI GGCC 1 cut(s) 251
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 1 cut(s) 152
BsnI GGCC 1 cut(s) 251
BsoBI CYCGRG 1 cut(s) 239
Bsp143I GATC 3 cut(s) 3, 54, 169
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 251
BspFNI CGCG 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 47
BspMAI CTGCAG 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 3 cut(s) 3, 54, 169
BstFNI CGCG 1 cut(s) 161
BstKTI GATC 3 cut(s) 6, 57, 172
BstMBI GATC 3 cut(s) 3, 54, 169
BstSFI CTRYAG 1 cut(s) 50
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 135
BsuRI GGCC 1 cut(s) 251
BtgZI GCGATG 2 cut(s) 75, 200
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 46
CviJI RGCY 4 cut(s) 148, 238, 251, 267
CviKI_1 RGCY 4 cut(s) 148, 238, 251, 267
DpnI GATC 3 cut(s) 5, 56, 171
DpnII GATC 3 cut(s) 3, 54, 169
DraIII CACNNNGTG 1 cut(s) 109
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
Eco47I GGWCC 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 46
FaiI YATR 1 cut(s) 134
FbaI TGATCA 2 cut(s) 3, 169
Fnu4HI GCNGC 2 cut(s) 149, 183
Fsp4HI GCNGC 2 cut(s) 149, 183
GluI GCNGC 2 cut(s) 149, 183
HaeIII GGCC 1 cut(s) 251
HapII CCGG 1 cut(s) 152
HpaII CCGG 1 cut(s) 152
HphI GGTGA 2 cut(s) 31, 187
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 1 cut(s) 52
HpySE526I ACGT 1 cut(s) 209
Ksp22I TGATCA 2 cut(s) 3, 169
Kzo9I GATC 3 cut(s) 3, 54, 169
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 8 cut(s) 58, 62, 65, 91, 130, 158, 165, 249
Lsp1109I GCAGC 1 cut(s) 135
MaeII ACGT 1 cut(s) 209
MaeIII GTNAC 1 cut(s) 122
MalI GATC 3 cut(s) 5, 56, 171
MboI GATC 3 cut(s) 3, 54, 169
MboII GAAGA 2 cut(s) 175, 244
MspI CCGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 161
NdeII GATC 3 cut(s) 3, 54, 169
NlaIV GGNNCC 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 122
PcsI WCGNNNNNNNCGW 1 cut(s) 215
PflFI GACNNNGTC 1 cut(s) 208
PkrI GCNGC 2 cut(s) 150, 184
PpuMI RGGWCCY 1 cut(s) 46
Psp5II RGGWCCY 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 47
PspPI GGNCC 1 cut(s) 46
PspPPI RGGWCCY 1 cut(s) 46
PstI CTGCAG 1 cut(s) 54
PsyI GACNNNGTC 1 cut(s) 208
SatI GCNGC 2 cut(s) 149, 183
Sau3AI GATC 3 cut(s) 3, 54, 169
Sau96I GGNCC 1 cut(s) 46
SetI ASST 6 cut(s) 21, 33, 143, 177, 212, 246
SfcI CTRYAG 1 cut(s) 50
SinI GGWCC 1 cut(s) 46
SsiI CCGC 1 cut(s) 182
TaiI ACGT 1 cut(s) 212
TauI GCSGC 1 cut(s) 185
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 121
TspRI CASTG 1 cut(s) 127
Tth111I GACNNNGTC 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.