RLG00000001599

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016946
Physical Location & Seq
Reverse (-)
17979525 .. 17980712
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001599

Sequence Viewer

Length: 474 bp
ATGGTGATGAAGGGGAAAACTGAGATAAGTAGTGGTGATAGGATTAAGCTTTCTCTAGGAAGAAGAGTCCTTGTTCCACGGCAGGAGTTTGGTGGGTGGTATGTTCATGGACTCGGTGATATGACTGGCAGTGAAAGCAAGGATGGTGATGCTGTTTCCAACACTGTGAGAGCAACGTTGGTCGTCATGCGTATTGCGGCGGTGGCAGATTTGGATTGCTTGGAGTTGGGCCAGGGTACCATAGTCGGTGCTAATGGTGTTTGGGGCCGGAGGCAAGCGGCCTTGATTGCGCAGTCTCTCCTCGATGGTGGTCAGTACTCCCAAGGCTTTTGTTTGTGCAGCAGCAGTCCTATAGTGGCTTCTATAGGGGCGACAGTCTCCATGATGACCCGGGGGGGGTTTCAAGAGGGAGGCGGCAGCGGCAGAGTAGCATGGGAGGCTAGGTTTTATCCCAAATGGGCCTGTTGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

16.62

Weight (kDa)

8.8

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 291
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 236
AciI CCGC 5 cut(s) 197, 200, 278, 414, 420
AclI AACGTT 1 cut(s) 176
AfaI GTAC 2 cut(s) 238, 317
AfiI CCNNNNNNNGG 1 cut(s) 396
AgsI TTSAA 1 cut(s) 404
AjnI CCWGG 1 cut(s) 231
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
Alw26I GTCTC 2 cut(s) 300, 382
Ama87I CYCGRG 1 cut(s) 390
AoxI GGCC 4 cut(s) 229, 265, 279, 459
ApeKI GCWGC 3 cut(s) 339, 342, 417
Asp718I GGTACC 1 cut(s) 236
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 3 cut(s) 229, 265, 459
AsuC2I CCSGG 2 cut(s) 391, 392
AsuHPI GGTGA 4 cut(s) 16, 47, 128, 158
AvaI CYCGRG 1 cut(s) 390
BaeI ACNNNNGTAYC 2 cut(s) 228, 261
BanI GGYRCC 1 cut(s) 236
BbvI GCAGC 3 cut(s) 351, 354, 429
BccI CCATC 2 cut(s) 137, 299
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 233
BcnI CCSGG 2 cut(s) 391, 392
BcoDI GTCTC 2 cut(s) 300, 382
BfaI CTAG 2 cut(s) 56, 441
BfmI CTRYAG 2 cut(s) 351, 363
BglI GCCNNNNNGGC 1 cut(s) 467
BisI GCNGC 7 cut(s) 198, 279, 340, 343, 415, 418, 421
BlsI GCNGC 7 cut(s) 199, 280, 341, 344, 416, 419, 422
BmcAI AGTACT 1 cut(s) 317
Bme1390I CCNGG 3 cut(s) 233, 391, 392
BmeT110I CYCGRG 1 cut(s) 390
BmgT120I GGNCC 3 cut(s) 229, 265, 459
BmiI GGNNCC 2 cut(s) 238, 266
BmrFI CCNGG 3 cut(s) 233, 391, 392
BmsI GCATC 1 cut(s) 139
BpuMI CCSGG 2 cut(s) 391, 392
BsaJI CCNNGG 5 cut(s) 77, 232, 322, 390, 391
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bsc4I CCNNNNNNNGG 1 cut(s) 396
Bse1I ACTGG 1 cut(s) 130
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 5 cut(s) 77, 232, 322, 390, 391
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 396
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 3 cut(s) 351, 354, 429
BsgI GTGCAG 1 cut(s) 358
BshFI GGCC 4 cut(s) 231, 267, 281, 461
BshNI GGYRCC 1 cut(s) 236
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 2 cut(s) 268, 391
BslI CCNNNNNNNGG 1 cut(s) 396
BsmAI GTCTC 2 cut(s) 300, 382
BsnI GGCC 4 cut(s) 231, 267, 281, 461
BsoBI CYCGRG 1 cut(s) 390
BspACI CCGC 5 cut(s) 197, 200, 278, 414, 420
BspANI GGCC 4 cut(s) 231, 267, 281, 461
BspCNI CTCAG 1 cut(s) 13
BspLI GGNNCC 2 cut(s) 238, 266
BspT107I GGYRCC 1 cut(s) 236
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 5 cut(s) 77, 232, 322, 390, 391
BssT1I CCWWGG 1 cut(s) 322
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 2 cut(s) 166, 376
Bst6I CTCTTC 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 21
BstDSI CCRYGG 1 cut(s) 77
BstF5I GGATG 1 cut(s) 148
BstHHI GCGC 1 cut(s) 292
BstMAI GTCTC 2 cut(s) 300, 382
BstMWI GCNNNNNNNGC 6 cut(s) 135, 203, 287, 420, 437, 467
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 3 cut(s) 231, 389, 390
BstSFI CTRYAG 2 cut(s) 351, 363
BstV1I GCAGC 3 cut(s) 351, 354, 429
BsuRI GGCC 4 cut(s) 231, 267, 281, 461
BtgI CCRYGG 1 cut(s) 77
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 1 cut(s) 136
BtsIMutI CAGTG 2 cut(s) 136, 162
Cac8I GCNNGC 1 cut(s) 276
CfoI GCGC 1 cut(s) 292
Cfr13I GGNCC 3 cut(s) 229, 265, 459
Cfr9I CCCGGG 1 cut(s) 390
Csp6I GTAC 2 cut(s) 237, 316
CviAII CATG 4 cut(s) 107, 187, 382, 432
CviJI RGCY 9 cut(s) 49, 231, 267, 281, 327, 359, 440, 461, 470
CviKI_1 RGCY 9 cut(s) 49, 231, 267, 281, 327, 359, 440, 461, 470
CviQI GTAC 2 cut(s) 237, 316
DdeI CTNAG 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 58
EarI CTCTTC 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 322
Eco88I CYCGRG 1 cut(s) 390
EcoRII CCWGG 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 322
FaeI CATG 4 cut(s) 110, 190, 385, 435
FaiI YATR 9 cut(s) 102, 108, 122, 188, 242, 353, 365, 383, 433
FatI CATG 4 cut(s) 106, 186, 381, 431
Fnu4HI GCNGC 7 cut(s) 198, 279, 340, 343, 415, 418, 421
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 7 cut(s) 198, 279, 340, 343, 415, 418, 421
FspBI CTAG 2 cut(s) 56, 441
FspI TGCGCA 1 cut(s) 291
GlaI GCGC 1 cut(s) 291
GluI GCNGC 7 cut(s) 198, 279, 340, 343, 415, 418, 421
HaeIII GGCC 4 cut(s) 231, 267, 281, 461
HapII CCGG 2 cut(s) 268, 391
HhaI GCGC 1 cut(s) 292
Hin1II CATG 4 cut(s) 110, 190, 385, 435
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 2 cut(s) 66, 111
HpaII CCGG 2 cut(s) 268, 391
HphI GGTGA 4 cut(s) 16, 47, 128, 158
Hpy188III TCNNGA 1 cut(s) 404
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 2 cut(s) 166, 376
HpyCH4IV ACGT 1 cut(s) 176
HpyCH4V TGCA 1 cut(s) 339
HpyF10VI GCNNNNNNNGC 6 cut(s) 135, 203, 287, 420, 437, 467
HpyF3I CTNAG 1 cut(s) 21
HpySE526I ACGT 1 cut(s) 176
Hsp92II CATG 4 cut(s) 110, 190, 385, 435
HspAI GCGC 1 cut(s) 290
KpnI GGTACC 1 cut(s) 240
LpnPI CCDG 6 cut(s) 68, 111, 218, 245, 281, 404
Lsp1109I GCAGC 3 cut(s) 351, 354, 429
LweI GCATC 1 cut(s) 139
MaeI CTAG 2 cut(s) 56, 441
MaeII ACGT 1 cut(s) 176
MboII GAAGA 2 cut(s) 72, 75
MlyI GAGTC 2 cut(s) 75, 105
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 5 cut(s) 264, 311, 400, 404, 430
MseI TTAA 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 420
MspI CCGG 2 cut(s) 268, 391
MspR9I CCNGG 3 cut(s) 233, 391, 392
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 6 cut(s) 135, 203, 287, 420, 437, 467
NciI CCSGG 2 cut(s) 391, 392
NlaIII CATG 4 cut(s) 110, 190, 385, 435
NlaIV GGNNCC 2 cut(s) 238, 266
NsbI TGCGCA 1 cut(s) 291
PkrI GCNGC 7 cut(s) 199, 280, 341, 344, 416, 419, 422
PleI GAGTC 2 cut(s) 74, 105
PpsI GAGTC 2 cut(s) 74, 105
Psp1406I AACGTT 1 cut(s) 176
Psp6I CCWGG 1 cut(s) 231
PspGI CCWGG 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 238, 266
PspPI GGNCC 3 cut(s) 229, 265, 459
RsaI GTAC 2 cut(s) 238, 317
RsaNI GTAC 2 cut(s) 237, 316
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 7 cut(s) 198, 279, 340, 343, 415, 418, 421
Sau96I GGNCC 3 cut(s) 229, 265, 459
ScaI AGTACT 1 cut(s) 317
SchI GAGTC 2 cut(s) 75, 105
ScrFI CCNGG 3 cut(s) 233, 391, 392
SetI ASST 3 cut(s) 51, 179, 446
SfaNI GCATC 1 cut(s) 139
SfcI CTRYAG 2 cut(s) 351, 363
SmaI CCCGGG 1 cut(s) 392
SsiI CCGC 5 cut(s) 197, 200, 278, 414, 420
SspMI CTAG 2 cut(s) 56, 441
StyD4I CCNGG 3 cut(s) 231, 389, 390
StyI CCWWGG 1 cut(s) 322
TaaI ACNGT 2 cut(s) 166, 376
TaiI ACGT 1 cut(s) 179
TaqI TCGA 1 cut(s) 303
TatI WGTACW 1 cut(s) 315
TauI GCSGC 4 cut(s) 200, 281, 417, 423
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 2 cut(s) 136, 169
TseI GCWGC 3 cut(s) 339, 342, 417
TspDTI ATGAA 2 cut(s) 23, 95
TspMI CCCGGG 1 cut(s) 390
TspRI CASTG 2 cut(s) 136, 169
XmaI CCCGGG 1 cut(s) 390
XspI CTAG 2 cut(s) 56, 441
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.