Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004250.1

Orthogroup ID

OG0016946

Physical Location & Seq

Genomic Coordinates Reverse (-)

148527 .. 149371

Gene Structure 845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004250.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atgacattcgtccgagacgacagacggaacatcatttgttcgatcagcggagagaggagcagggagcaggaggagaagaatgacaagtggcacagggtggagaggagcagcggcaagttcctgaggaggttcaggctgccggataatgcaaaggtggaacatgtcaaggcttctatggagaatggggttctcactgtgactgtgcccaaagcagaggagcagaagccccaggtcaagagcatcgacatttctggagcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0022607 GO:0043933 GO:0044085 GO:0050896 GO:0051259 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

HSP20

Protein Analysis

86

Amino Acids

9.95

Weight (kDa)

9.57

Isoelectric Point (pI)

58.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016946)

Species	Orthologous Gene IDs
malus_domestica	MD07G1210500.v1.1
rosa_laevigata	RLG00000001410 RLG00000001599
rosa_multiflora	Rmu_sc0000882.1_g000040 Rmu_sc0004250.1_g000032 Rmu_sc0006065.1_g000008 Rmu_sc0019205.1_g000001
rosa_samantha	Rh1BG211900 Rh2DG508000 Rh3BG313300 Rh4DG314600 Rh5AG191700 Rh5BG113800 Rh7BG380200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	48, 111
AdeI	CACNNNGTG	1 cut(s)	97
AflIII	ACRYGT	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	9
ApeKI	GCWGC	2 cut(s)	108, 136
AxyI	CCTNAGG	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	207
BbvI	GCAGC	2 cut(s)	120, 123
BciT130I	CCWGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	9
BisI	GCNGC	3 cut(s)	109, 112, 137
BlsI	GCNGC	3 cut(s)	110, 113, 138
Bme1390I	CCNGG	1 cut(s)	230
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	230
BmsI	GCATC	1 cut(s)	249
BoxI	GACNNNNGTC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	228
Bse21I	CCTNAGG	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	113
BseRI	GAGGAG	5 cut(s)	70, 86, 118, 139, 230
BseSI	GKGCMC	1 cut(s)	207
BseXI	GCAGC	2 cut(s)	120, 123
BsiSI	CCGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	9
BsmBI	CGTCTC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	2 cut(s)	48, 111
BspCNI	CTCAG	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	2 cut(s)	196, 202
BstDEI	CTNAG	1 cut(s)	122
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	42
BstNI	CCWGG	1 cut(s)	230
BstNSI	RCATGY	1 cut(s)	164
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	228
BstSLI	GKGCMC	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	120, 123
Bsu36I	CCTNAGG	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	192
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	4 cut(s)	136, 170, 226, 257
CviKI_1	RGCY	4 cut(s)	136, 170, 226, 257
DdeI	CTNAG	1 cut(s)	122
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
DraIII	CACNNNGTG	1 cut(s)	97
Eco81I	CCTNAGG	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	9
FaeI	CATG	1 cut(s)	164
FaiI	YATR	2 cut(s)	162, 176
FatI	CATG	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	109, 112, 137
Fsp4HI	GCNGC	3 cut(s)	109, 112, 137
GluI	GCNGC	3 cut(s)	109, 112, 137
HapII	CCGG	1 cut(s)	140
Hin1II	CATG	1 cut(s)	164
HpaII	CCGG	1 cut(s)	140
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	3 cut(s)	121, 235, 252
HpyCH4III	ACNGT	2 cut(s)	196, 202
HpyCH4V	TGCA	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	122
Hsp92II	CATG	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	5 cut(s)	57, 64, 105, 217, 254
LpnPI	CCDG	9 cut(s)	46, 53, 79, 118, 134, 153, 215, 237, 242
Lsp1109I	GCAGC	2 cut(s)	120, 123
LweI	GCATC	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	207
MnlI	CCTC	6 cut(s)	48, 64, 96, 117, 120, 208
MspA1I	CMGCKG	2 cut(s)	48, 111
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	230
MvaI	CCWGG	1 cut(s)	230
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	1 cut(s)	164
NlaIV	GGNNCC	1 cut(s)	256
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	164
PciI	ACATGT	1 cut(s)	160
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	110, 113, 138
PscI	ACATGT	1 cut(s)	160
PshAI	GACNNNNGTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	256
SatI	GCNGC	3 cut(s)	109, 112, 137
Sau3AI	GATC	1 cut(s)	42
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	3 cut(s)	131, 156, 234
SfaNI	GCATC	1 cut(s)	249
SsiI	CCGC	2 cut(s)	48, 111
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	196, 202
TaqI	TCGA	2 cut(s)	41, 243
TauI	GCSGC	1 cut(s)	114
TscAI	CASTG	1 cut(s)	199
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	2 cut(s)	108, 136
Tsp45I	GTSAC	1 cut(s)	196
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	199
XceI	RCATGY	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.