Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0016946

Physical Location & Seq

Genomic Coordinates Reverse (-)

31850523 .. 31850756

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG313300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCCAGAATTCACCGAATCCAATTACAGAGTAAAAGAACGGAGACCGGAGGTTCTAGGCTTCTGGCCGTCGAACATCATCGTCCGGATCCACGACCTCAGCTCACTAAATGTTCTCAGCTGTGGCGGCGTGACGCTTTGGACTCTCTTGCGTTTGACCGTGTTCGTCCACAACTATGAAACCTCAACTTCGCCGTCTCCGACAGCCGCTTTCTTCACCGCCTCTCTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

77

Amino Acids

8.7

Weight (kDa)

6.71

Isoelectric Point (pI)

70.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016946)

Species	Orthologous Gene IDs
malus_domestica	MD07G1210500.v1.1
rosa_laevigata	RLG00000001410 RLG00000001599
rosa_multiflora	Rmu_sc0000882.1_g000040 Rmu_sc0004250.1_g000032 Rmu_sc0006065.1_g000008 Rmu_sc0019205.1_g000001
rosa_samantha	Rh1BG211900 Rh2DG508000 Rh3BG313300 Rh4DG314600 Rh5AG191700 Rh5BG113800 Rh7BG380200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	84
AciI	CCGC	3 cut(s)	126, 207, 219
AclWI	GGATC	2 cut(s)	82, 95
AcoI	YGGCCR	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	8
AluBI	AGCT	2 cut(s)	102, 120
AluI	AGCT	2 cut(s)	102, 120
Alw26I	GTCTC	2 cut(s)	37, 201
AlwI	GGATC	2 cut(s)	82, 95
Aor13HI	TCCGGA	1 cut(s)	84
AoxI	GGCC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	8
AsuHPI	GGTGA	2 cut(s)	4, 208
BamHI	GGATCC	1 cut(s)	87
BbvCI	CCTCAGC	1 cut(s)	98
BceAI	ACGGC	2 cut(s)	52, 178
BcoDI	GTCTC	2 cut(s)	37, 201
BfaI	CTAG	1 cut(s)	56
BisI	GCNGC	2 cut(s)	127, 207
BlsI	GCNGC	2 cut(s)	128, 208
BmiI	GGNNCC	1 cut(s)	89
Bpu10I	CCTNAGC	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	37
BsaWI	WCCGGW	2 cut(s)	46, 84
BseAI	TCCGGA	1 cut(s)	84
BseMII	CTCAG	2 cut(s)	112, 130
BshFI	GGCC	1 cut(s)	67
BsiSI	CCGG	2 cut(s)	47, 85
BsmAI	GTCTC	2 cut(s)	37, 201
BsmBI	CGTCTC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	67
Bso31I	GGTCTC	1 cut(s)	37
Bsp13I	TCCGGA	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	3 cut(s)	126, 207, 219
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	2 cut(s)	111, 129
BspEI	TCCGGA	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	82, 95
BspTNI	GGTCTC	1 cut(s)	37
BssMI	GATC	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	98, 116
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	2 cut(s)	37, 201
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	1 cut(s)	67
CseI	GACGC	1 cut(s)	142
CviJI	RGCY	5 cut(s)	60, 67, 102, 120, 206
CviKI_1	RGCY	5 cut(s)	60, 67, 102, 120, 206
DdeI	CTNAG	2 cut(s)	98, 116
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
EaeI	YGGCCR	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco31I	GGTCTC	1 cut(s)	37
EcoRI	GAATTC	1 cut(s)	8
Esp3I	CGTCTC	1 cut(s)	201
FaiI	YATR	2 cut(s)	177, 232
Fnu4HI	GCNGC	2 cut(s)	127, 207
Fsp4HI	GCNGC	2 cut(s)	127, 207
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	2 cut(s)	127, 207
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	2 cut(s)	47, 85
HgaI	GACGC	1 cut(s)	142
HinfI	GANTC	2 cut(s)	17, 142
HpaII	CCGG	2 cut(s)	47, 85
HphI	GGTGA	2 cut(s)	4, 208
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	201
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	160
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpyF3I	CTNAG	2 cut(s)	98, 116
Kpn2I	TCCGGA	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	87
LpnPI	CCDG	4 cut(s)	18, 49, 60, 98
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	2 cut(s)	205, 218
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	2 cut(s)	8, 22
MlyI	GAGTC	1 cut(s)	136
MmeI	TCCRAC	1 cut(s)	224
MnlI	CCTC	4 cut(s)	43, 107, 193, 232
MroI	TCCGGA	1 cut(s)	84
MslI	CAYNNNNRTG	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	120
MspI	CCGG	2 cut(s)	47, 85
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	1 cut(s)	87
NlaIV	GGNNCC	1 cut(s)	89
NmuCI	GTSAC	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	128, 208
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	87
PvuII	CAGCTG	1 cut(s)	120
RseI	CAYNNNNRTG	1 cut(s)	174
SatI	GCNGC	2 cut(s)	127, 207
Sau3AI	GATC	1 cut(s)	87
SchI	GAGTC	1 cut(s)	136
SetI	ASST	5 cut(s)	54, 99, 104, 122, 185
SgeI	CNNG	9 cut(s)	17, 59, 68, 76, 97, 104, 142, 160, 172
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	2 cut(s)	8, 22
SsiI	CCGC	3 cut(s)	126, 207, 219
SspMI	CTAG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	71
TasI	AATT	2 cut(s)	8, 22
TauI	GCSGC	2 cut(s)	129, 209
TfiI	GAWTC	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	192
TspGWI	ACGGA	1 cut(s)	55
XapI	RAATTY	1 cut(s)	8
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.